Clinocottus analis (woolly sculpin): 137790019
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Entry
137790019 CDS
T10471
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
cana04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137790019 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
137790019 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137790019 (prpf19)
04121 Ubiquitin system [BR:
cana04121
]
137790019 (prpf19)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137790019 (prpf19)
Enzymes [BR:
cana01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137790019 (prpf19)
Spliceosome [BR:
cana03041
]
Complex B
Other components
Prp19 complex
137790019 (prpf19)
Complex C
Prp19-CDC5 complex
137790019 (prpf19)
Ubiquitin system [BR:
cana04121
]
Ubiquitin ligases (E3)
U-box type E3
137790019 (prpf19)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
137790019 (prpf19)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
Beta-prop_EML_2
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Prp19
Beta-prop_WDR3_2nd
WD40_Gbeta
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EML
DSE1_N
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
NBCH_WD40
CFAP251_N
Beta-prop_TEP1_C
ASA1
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_EIPR1
PEP5_VPS11_N
Beta-prop_WDR19_1st
PAC11
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_SPT8
U-box
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_Nup120_160
WD40_RFWD3
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Beta-prop_ACSF4
Alpha_humulene_synt
Ge1_WD40
Tricorn_2nd
Cytochrom_D1
zf-Nse
CCDC13
ATG16
Motif
Other DBs
NCBI-GeneID:
137790019
NCBI-ProteinID:
XP_068440059
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSSQVFERRLIEKYIAENGTDPMNGQPLSEEQLVDIKVSHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQALPASQPAAAGSGGEPMEISEQVGMTPEIIQKLQDK
ATILTTERKKRGKTVPEELIRAEDLSKYRQVASHAGLHSASVPGILALDLCPSDTNKVLS
GGADKNVVVFDKSEEQIVATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVIRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDESAGCALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFTNHSGLVT
GVAFGENAQFLTSAGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttggtttgtgcaatttccaacgaggtgccggagcacccgtgcgtgtcgccggtg
tccagccaggtgttcgagcggaggctcatcgaaaagtacatcgcagagaatgggaccgac
ccgatgaacggccagccgctgtctgaggagcagctcgtagatatcaaagtgtcccatcct
attagacctaaggctccatcagcaacaagcattcctgccattctcaagtcacttcaagat
gaatgggacgctgttatgcttcatagcttcaccctgcggcaacagctgcagactactcgc
caagaactgtcccacgcgctttaccaacatgatgctgcctgcagagtcatcgctcgactc
accaaagaggtcactgctgcgagagaagctcttgccacactgaaaccccaggctggattg
gttgcccctcaggcacttcccgcctcccagccagctgcagcaggttctggcggagagccc
atggagattagtgaacaggtgggaatgaccccagagatcatacaaaagcttcaagacaaa
gctactatcctcaccacagaaagaaagaagagaggaaaaactgtcccagaggagctcatt
agagctgaggatctcagcaaatatcgccaagtggcctctcatgctggtcttcatagtgcc
agtgtccctggtattctggctctggatctgtgtccctcagacaccaacaaagttcttagc
ggtggagctgataagaacgtggtggtgtttgacaagagcgaagaacagattgtggcaaca
cttaagggtcacaccaagaaggtcacctctgtcatataccatccatcccagtccgtggtt
ttctctgcatctccagacagcaccatccgtgtgtggtccgtcaccgggggaaactgtgtc
caggtgatccgtgcccacgaggcaggtgtcaccggactctccctacatgctactggagac
tacttgctcagctcctctgaggatcagtactgggccttttctgatatccagactggtaga
gtcctcaccaaagttactgatgaaagtgctggctgtgctctcacctgtgctcagttccac
cctgatggtctcatttttggcactgggacggctgattcccaaatcaagatctgggatctg
aaagagcgcaccaacgtggccaacttcccaggccactctggccctgtcacctccattgct
ttctctgagaatggatattatctggctacaggtgcccaggatagctccctgaaactgtgg
gatctgagaaaactgaagaatttcaagaccatcactctggacaacaactatgaggttaag
tccctcgtgtttgaccagagcggaacctacctggctgttggagggtctgacatccgtgtc
tacatctgcaaacagtggtccgaggtcctcaacttcacaaaccattcaggattggtgact
ggagtggcctttggagagaacgctcagttcctgacctctgcgggaatggacagaagtctc
aaattttacagtttgtag
DBGET
integrated database retrieval system
