Clinocottus analis (woolly sculpin): 137790107
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Entry
137790107 CDS
T10471
Symbol
frem2b
Name
(RefSeq) FRAS1-related extracellular matrix protein 2b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137790107 (frem2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
cana04091
]
137790107 (frem2b)
Lectins [BR:
cana04091
]
C-Type lectins
Lecticans
137790107 (frem2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Big_9
TMEM154
Protocadherin
LAX
DUF6522
SIT
Motif
Other DBs
NCBI-GeneID:
137790107
NCBI-ProteinID:
XP_068440165
LinkDB
All DBs
Position
Unknown
AA seq
3112 aa
AA seq
DB search
MAWIIPPHLHRTGAAFVLLAVILTGDAVAQVFDSYGLSYALRSEPSEDTILVANNGIRVP
FGRSVFIDPINDLVIQVQPGDRCSITVLDNDPLSQTPGHLSPKKFPCEFGPNDVKYSHFG
SRSPPRDRVRLQLRYDTQTDTIIIPFMMEVEVIFTQLEVLTKNMPLTVEKLLSISNPIDR
RILEFTYEKSTQQCKIASLSSGSVLPRYGKLVDEDSLGTMVDCDEFIKMNIRYQHTFALK
SPNRDYIPMLVELHDKEGNLLKQEFFQILVRIKDGEENTAPKPSFVAMMMMEVDQFVMTA
ITMDMLAAEDVESNPDELIFNITSTLSFEEGYIVSTDDRNLPITSFYQGDLKDLKIAYKP
PAVDSDTERIFQIEFEVVDTEGAVSDPFAFMIVVKPMNTLAPVVTRNTGQLLYEGQSRPL
SSSQSLEISDEDSLHNVKITVIDGLRHGELTVLGSNRKFFTPADLDAGVVIYIHDGSDTY
SDNIIFRMTDGTNEVEFLFPITVVPTDDEAPIINANTGLILFKNQMMPISSLTLSAADID
SEDSSIKFTIEPPFSTIGQVLLRQSEAPEDPSTWKFNTEDELYEKVVTEWLQQDITDGKL
FYKHIGPHSVSTVMDQFVFGVQDDNDPPNQSSESSFIIKIIPIDDVPPELYPDTTLQMTV
HEYHLTYFRKKFLRYTDLDSEDRDLKYTIIQPATDTDENSPVVLGALVLTENPNTEVTVF
TQAQINHHKIAYKPPELELGITSHVLQFRYTVEDVSGNIVEGDFTIFLKPVDNTPPQITN
SGFTVFERGIHIFTSDELDTTDTDTDSKQISFTITQPPLHGQIQFTFSDITRGDSFSLED
IGNGRISYTHNGDESTVDFIQIDVSDGIHIVPITIQISVKPIDDETPTINLPAGTIGSFI
DVLENGATEITSNVIQGRDEDTDDLRLTFIVEDPPSLGEILVKGVPSGTFTQADVINGVV
VYAHTSGEIGLTTKEDFFNLTLTDMSDEWTVGGNKITGVRVHVTILPLDSQAPQVFVGPQ
FSVVEGAKNVIQILHVRADDADTSNDQLLCTIIVQPTSGYVENISPAPGSEKSRSGTAIS
AFTIKDIRQNNIYYVQSIHKGVEPVEDRFTFRCSDGINFSERHFFPISIIPSNDEKPEIY
MREFVVMEGMNIVIDTPILNGVDADLPSDQLTFIITKSPKHGFILNQLTTGTIPASNFTL
DQIREASSIVYEHDDSETTEDSFDIVLTDGKFRVEKTVIVMIIPVDDETPRMAINDGLEI
EIGDVKVINSNVLKATDLDSEDETLTYIVRYGPSQGNLQRVTSGTFQNITVGVNFTQNEV
DQGLIVYIHNGQEGIRDLIKFDVTDGINPLIDRYFYVTVGGIDMVFPDVISKGVSLKEGG
RVTLTTDLLSTSDLNSPDEHLVFTITRAPIRGHLECTDTPGMPISSFTQLQLAGNKVYYI
HTSDDEVKMDSFEFEVTDGYNPVFRTFRVSITDVDNKKPVVTVHSLVVTEGENKLITPFE
LTVEDRDTVDRLLKFTVTQIPVHGRLLFNNTRAVTSFTKQDLNENMISYKHDGTESAEDS
FSFTVTDGTHTDFYIFPNTVFETRKPQMMKISVLPVDNGVPQIVVNKGAPTLRVLENGHL
GFVITSKTLKAEDRDSIQNSVTFRITVAPEHGYLINLGRGNATIITFTQAEIDDMNICYV
LRDGDKATNDIFSFSIDDSGGNKLKNQQFRLNWAWISLEKQHYVVDEEVKFLEVVLKRRG
YLGETSFVSIGTTDGTAQKDKDFRGKSQKQVQFNPGQTTATWKVRILSDNEYEVSETFQI
VLSEPVMAALEFPEIATVEILDPDDESTVFIPSAAYNIEEDIGELLIPVHRSGDVSLELM
VICYTQQVSATGTLPTTVLSYSDYISRPEDHRSILRFDKGEVEKACRVVIIDDSLYEDEE
GFNVTLSMPMGGRLGSDFPVARITIIPDMEDAPIFYFGNTDYHVDESDGFVEVQVWRTGT
DLSKGGTVTVRSRKTDPVSAEAGVDYVGISRNLDFAPGVTMQTFRVTILDDLGQPVLEGV
ERFELVLRMPMNGILGEPTKANILINDSISDLPKVQFQDAVYVGNEDSGQISATVYRSGD
ISYKSTVRCYSRQGTAQVMMDFNERPNTDNSIITFLPGEIEKSCLLVLVDDTEHEEDEEL
RLVLGSPKSESPFGASIGGQNETLVRIKDDADKAIIKFGETKFSVNEPKESGQVSVVKIP
VLRVGDTSKVSVVRVHTKDGSATSGEDYHPISEEIVFNEGDTQHYVEVEILYDSVREMRE
AFTVHLKPDENMVAETKMSKAIIYIEETNSMADVTFPSVPRVVSLLHYDDIDRTRDSSPV
AGYPVICVTACNPKYPDYDKTGSICVSENINNTLTRYRWLASAPTSHDGVTSPMREVDFD
TFFTSSKLITLDSVYFQAGSRVQCAARGVNSNGDEGLELSSPVVSISMDEGMCQPRVAGT
VGAEPFSAKLRYTGTEDTDHPNLIKLTVTMPHIDGMLPVVSTRALSNFELTLSPDGTRVG
NHRCSNLLDHAEVKTRYGFLTEATKNPEVIGETSSYQYSASLRGSNTLRFYRNLNLEACL
WEFTSYYDMSELLSDCGGNIGTDGQVLNLVQSYVTLRVPLHVSYVFHSPVGAGGWQHFDL
QSELRLTFVYDTAILWRDGIGSPPEADLQGALYPTSMRINGQGRLVVNFRTEARFRGLFV
FAHPASPLTSMVMCPDHPGLTFNVSLVRNEPTYNQPIQQWTFVSDFAVRDYSGTYTVKLI
PCTSPPSLEYTIPPVCNPREPLSFDMDIRFQQVSDPVPAEFSLNTQMILLSKRTLWLSDG
SMGFGQETDTAFSQGDMIYGRVMVDPVQNLGDSFICNIEKVFLCTGADGYVPKYNPSNFE
FGCLADAPSLLYRFKIIDKAQPETQARSFGNVAFDAFLAVDDPGALALVRQPASDGFRID
SSALFQVSAGREWFIHTIYTVRSRVNANRGIGKRSLEYHVMSQHTNPLPKVQHRTKRTAE
GGPDVIEEIGQSNNRGTNILHIALDRGSQQRTSPEREIFTKGIIPRELNKKDNSDDRLVL
IIGIFVGLLLVVLVIIVVVLLVRSKREKKEVPKSSSSAEPMMTQALSDSSEV
NT seq
9339 nt
NT seq
+upstream
nt +downstream
nt
atggcttggattattcccccgcatctgcacaggactggcgctgcttttgttctgctcgca
gtgattctgacaggtgatgccgttgcacaggtttttgacagctatggattatcatacgcc
ttgaggtccgagccgtcggaggacacgatactggttgccaacaatgggatccgcgtgcct
ttcgggagatcagtcttcattgatcccatcaacgatttggttatccaagttcagcccggt
gatagatgcagcataacggtcctggacaatgaccccctgtctcaaacgcctggacacctg
tctccgaaaaagtttccgtgtgaatttggccccaacgacgttaagtattcacacttcgga
tccaggagccctccgagggatagagtgagattacaactcaggtatgacacccaaacggat
accattataatacctttcatgatggaggtggaagtcattttcacacagctggaagttcta
accaaaaatatgccactcactgtcgagaaactgctcagcatcagtaaccccattgataga
agaatattagaattcacttatgaaaaaagtacacaacaatgcaaaatagcctctctctca
agtggcagcgtgctgcccaggtatggaaaacttgtggatgaggacagcctcggaacaatg
gtggactgtgatgaatttattaaaatgaatattcgttatcagcatacttttgctttgaag
tcacccaacagagattacattccaatgcttgtggagttacacgataaggagggcaatttg
ctcaagcaggaatttttccaaattttggtgaggattaaagatggagaggagaacacagct
cctaaacccagctttgttgcaatgatgatgatggaagtagaccagtttgtcatgacagcg
ataaccatggatatgctggctgcagaggatgttgagtctaatcctgatgaattaattttc
aacatcacatccaccttgtcctttgaggagggctatatagtgagcacagatgataggaat
ttaccaataacctcattttaccaaggagacctcaaagacttgaaaattgcctacaaaccc
cctgctgtggattcagacactgagcggattttccagattgagtttgaggttgtggacaca
gagggggctgtgtcagacccttttgctttcatgattgttgttaagcctatgaacacattg
gcccctgtagtgactaggaataccggacagttgctgtatgagggtcagtccaggcctctg
tccagttcacagagtctggaaatcagcgatgaggacagtttacacaatgtcaaaatcact
gttattgatgggctcaggcacggagaattaaccgttctgggctcaaacaggaagtttttc
accccagctgacctcgatgctggagtggtcatttatatacatgatggcagtgacacatat
agtgataatattattttcagaatgacagatggaacaaatgaggtagagtttctgtttcca
atcactgtggtgccaactgatgacgaggctcccattatcaacgccaacactggtttgatt
ttattcaaaaaccaaatgatgccaatctcctcactcacgctcagtgctgctgatattgac
tcagaggattcttcaataaaattcacaatcgagccccccttttccacgattgggcaggtg
ttgctgcgtcagtcagaggccccagaggacccttcaacctggaagtttaatacagaggat
gaattgtatgagaaagtagtgactgaatggctgcagcaggatataaccgatggtaaactg
ttttacaagcacattgggcctcacagcgtcagcacagtcatggaccagtttgtgtttgga
gttcaagatgacaacgacccaccaaaccaatcaagtgagagctcattcattataaagatt
atccccatagacgacgtcccacctgaactttaccccgacacgactctgcaaatgactgtg
cacgagtatcatctcacttacttccgaaaaaaattcctccgttacactgacctggactcg
gaagatcgggatctgaaatacacaatcatccagccagcaacagatacagatgagaatagc
ccagttgtattgggagctctggtcttaactgaaaacccaaacactgaagtcacagttttc
actcaggcacaaattaatcatcataaaatagcctacaaaccacctgagcttgagcttgga
attaccagtcatgttttgcagtttcggtacactgtagaggatgtttctggaaatattgtt
gaaggagatttcactatatttttaaagcctgtggacaacacgcctcctcaaataaccaac
tctggattcactgtgtttgaacgcggcatacatatctttacgagtgatgagctggacacc
acagacacagacacagacagcaaacagatatccttcactattacccagcctccactgcat
ggccagatccagtttacattttctgatatcacaagaggagatagtttcagcctcgaggat
attggaaatggtagaatttcatacacccataatggagatgaatcaactgttgatttcata
caaatagatgtcagcgatggaatccacattgtcccaatcacaatacagattagcgtgaag
ccgattgatgatgagacgccaactatcaaccttccagctggcacaatcggctccttcata
gatgttttggaaaatggagcaacagaaatcacaagtaatgtcattcagggaagagatgag
gacacagatgacctccgtttgaccttcattgttgaggacccaccatcattgggtgaaatt
ctggtgaaaggtgttccatctggcacattcacccaagctgatgtcattaacggcgttgtg
gtctatgctcataccagtggtgagataggcttgaccacaaaggaggacttttttaatctc
actttgacggacatgtctgatgagtggactgtaggtggaaataaaatcacaggtgttaga
gtgcatgtaactattcttcccctggacagccaggctccacaggtctttgtggggccacag
ttctctgttgtggagggagcaaagaatgtcattcaaattcttcatgtacgggctgatgat
gcagacacctccaacgatcaactcctttgtacaataattgtacagccgacttcaggttac
gtggaaaatatctcacctgcaccaggctcagagaaatccagatccgggacagctattagt
gctttcaccatcaaagacatcagacagaataacatttactatgttcaaagcattcacaaa
ggagttgagccagtggaggacaggttcactttcagatgctctgatggcatcaatttctct
gaaaggcactttttcccgatatccataatcccctctaatgatgaaaagcctgaaatttat
atgagagagtttgtagttatggagggcatgaacatagtcatcgacactccgattctgaat
ggtgttgatgcagatctcccctctgatcagctcacatttattattaccaaatcccccaag
cacggatttattctcaatcagctcactactggcacgatccctgcctcgaacttcaccttg
gatcagatcagggaggcctccagcattgtgtatgagcatgatgactcagagaccacagag
gacagctttgatattgttctcacagacggaaagttccgtgtagagaaaacagtaatagtt
atgattatccctgtggacgacgagactccaaggatggcaatcaatgacggccttgaaatt
gagataggtgatgtgaaagtcataaacagtaatgttttaaaagcaactgatctggactct
gaggatgaaactctaacttatattgttcgctatgggcccagtcagggaaatctacagagg
gttacttctgggactttccaaaatattacagttggagttaactttacacagaacgaagtg
gatcagggtttaattgtgtacatccataatgggcaagagggaattcgggacctcattaaa
tttgatgtgacagatggcatcaatccactgatagacagatacttctatgtcacagtgggt
ggcattgacatggttttcccagacgtgatcagtaaaggtgtatcacttaaagagggtggc
agggttactctgacaacagacctgctcagcaccagtgacctcaatagcccggatgaacac
ttggttttcacgatcaccagagcccccattagaggacacctggagtgcacagacacacct
gggatgcctatctcatccttcacacagctccagctggctggcaacaaagtatactacatc
cacacttctgacgatgaagtgaaaatggatagctttgaatttgaagtgactgatggctac
aaccctgtttttcgcactttccgcgtctccatcactgacgtggacaataaaaagcctgtt
gtgacagtacacagcctcgtggtaaccgagggggagaacaaactcatcacgccgtttgag
ctcacagtggaggacagagacactgttgaccgccttttgaagttcacagtcactcaaatc
ccggttcatggtcgcctgctctttaacaacacccgggctgttacctcattcacaaagcag
gacctgaatgaaaacatgatcagctacaagcacgatggcacagagagtgcagaggacagc
ttttcatttaccgtcactgatggaacacacacagacttctacatctttcccaacacagtg
tttgaaactcgaaagccccaaatgatgaagatttctgttctaccagtggataatggcgtg
ccgcagattgtggtgaacaagggtgccccaacattgcgggtactggagaatggtcacctg
gggtttgtgatcaccagtaagactcttaaagcagaggacagagacagcattcagaattct
gtgacatttaggattactgtcgccccagaacacggctacctgatcaacctcggcagagga
aatgctactatcatcaccttcacacaagctgaaattgacgacatgaacatatgctatgtt
ctgagggatggtgacaaagccacaaatgacatcttctcattctccattgatgacagtggt
ggcaacaaactgaagaaccagcagttccgtttgaactgggcttggatctctttggagaag
caacactacgtggtggacgaagaagtcaagttcctggaagtggtgctgaaacgtcggggc
tacctgggggagacttcattcgttagtataggcacaacggatggcactgcacaaaaggac
aaggatttccgagggaaatctcagaaacaggtgcagttcaaccccggccagaccacagcc
acctggaaggtgcggatcctgtcggataacgagtacgaagtgtcagagaccttccaaatc
gttttgtctgagccggtgatggcagctcttgaattcccagagattgccactgtagagatc
ctggacccggatgatgagtcaacagtgttcataccctcggccgcatacaacatagaggag
gacattggtgagctgcttatcccggtgcacaggagtggggatgtcagtctggagctgatg
gtcatttgctacactcagcaagtttcggccacaggcaccctccccaccacagtgctgtcc
tactctgattacatctccaggcccgaggaccatcgcagcatccttcgcttcgacaaggga
gaggtggaaaaagcctgccgggtggtgatcatcgatgactccctgtatgaagacgaggaa
ggcttcaatgtcaccctcagcatgccgatggggggccgtctgggctcagatttccccgta
gctcgaatcacaatcatccccgatatggaagacgctcctatcttctactttggcaacaca
gactaccatgtggatgagagcgatggctttgtggaggtgcaggtatggaggacggggact
gatctctccaaaggaggaaccgtcacagtgcgttccagaaagacagatcctgtctcagct
gaggctggtgtggattacgttgggatcagccggaatctggattttgcaccgggggtcacc
atgcagacgtttcgtgtgaccatccttgatgacctgggtcagccggtgctggagggggta
gagaggtttgaactggtgctccgtatgcctatgaacgggatactcggagagccgacgaag
gctaacatcctcatcaatgactcaatttcagacctgcctaaggtgcagttccaggatgcc
gtgtatgtaggcaatgaggactctgggcagatctcagctactgtttatcgtagtggagac
atcagctacaagtccacagttcgctgttacagcaggcaggggacagcccaggtcatgatg
gactttaatgagaggcccaacacagataattccatcatcaccttcttaccaggagagatt
gaaaagtcttgtctactggtacttgttgacgacacagaacatgaggaagatgaagaactc
cgacttgtgttgggaagccccaagagtgaatctccatttggagcatctattggagggcag
aatgaaacactcgtcaggataaaagacgatgcagacaaggcaattataaagttcggagag
accaaatttagtgtgaacgagccaaaggaaagtggccaagtgtccgtggtgaagatccca
gtgctgcgtgtcggagacacctccaaggtctctgtcgtccgagttcacaccaaggatgga
tctgccacgtctggggaggactaccatcccatatccgaggaaattgtgttcaatgagggt
gacacacagcactatgtggaggtggagattttatatgacagcgtcagagaaatgagggag
gcgttcactgtgcaccttaagcctgatgagaacatggtggcagagacaaagatgagcaaa
gctataatctatatcgaggagaccaacagcatggcggatgtgaccttcccctcggtgccc
agagtggtttctctgttgcattacgacgacatcgacaggaccagggactcatcccctgtg
gccggataccctgtcatttgtgtcactgcctgtaaccccaagtacccagactatgacaag
acaggctccatctgcgtaagcgagaacatcaacaacaccctaacgcgttatcgttggctc
gctagtgcccccaccagccacgatggcgtcacgagccctatgagggaagtagactttgac
accttcttcacctcctccaagctcatcactctggattcagtctactttcaagctggttct
agggtccagtgtgccgcaaggggcgtgaactctaacggggacgagggtctggagctcagt
agccccgtagtgtccatcagcatggacgagggaatgtgtcagcctcgtgttgcaggcaca
gttggggccgagcccttctctgccaagctgcgatacactggcacagaagacacagaccac
cccaacctcatcaaactaactgtgaccatgccccacattgatggtatgctaccagtcgtg
tccacccgagctctgtctaactttgagctcacgctgagcccagacggaacccgtgtcggc
aaccatcgctgctccaatttgttggaccacgctgaggtcaagacccgctacggcttcctt
actgaagccactaaaaatccagaagtgatcggcgagacgtcctcttaccaatacagcgct
tccctcaggggttccaatacactacgattctacagaaacctcaacttggaagcttgtttg
tgggaattcaccagctactatgacatgtcagagctgctcagtgactgtggaggcaacatt
gggactgatggacaggtgttgaatctggtccagtcctatgtgacgctacgagtaccgctc
catgtgtcttatgtcttccattcccctgtgggagcaggaggatggcagcactttgattta
cagtcagagctgaggctcacttttgtttacgacactgccatcttatggcgggatggtata
ggtagcccaccggaggctgacctacaaggtgccctgtacccaaccagcatgcgtataaat
ggccagggacgactagtcgtcaacttccgcactgaggctcgattcagaggcctgtttgtg
tttgcacatccagcttcaccactgacctccatggtcatgtgtcctgaccaccctggttta
acctttaacgtcagtcttgtgaggaatgagccaacctacaaccagcccatccaacagtgg
acatttgtctcggattttgctgtgcgtgactactctggcacatacacggtgaagctgatc
ccctgcacatcccctcccagcctggagtacaccatccctcctgtttgcaatcccagagag
ccgctgagctttgacatggacatccgctttcagcaggttagcgaccctgtgcctgctgag
ttcagcctgaacacgcagatgatcttactctcgaagcggacgctctggctctcagacggc
tccatgggcttcggacaggagaccgacactgccttctcacaaggggatatgatttacgga
agagtaatggtggatccagtgcagaacttgggcgactcctttatttgtaacatagagaaa
gtcttcctgtgtactggcgctgatgggtatgtccctaaatacaaccccagcaactttgag
tttggctgtctggctgatgctccatcactactctacagattcaagataattgacaaggcc
cagccagagacccaggcccggtcatttggtaatgtagctttcgatgccttcctggcagtg
gatgaccccggtgctttggctctagtaaggcaacctgcgtcggatggtttcagaattgat
tcctcagctctcttccaggtttctgcagggagagagtggttcattcacaccatctacact
gtacgttcgcgggtcaatgctaaccgtggcatcgggaagagaagcctggagtaccacgtg
atgagccagcacacaaatccgcttccaaaggttcaacatcgcaccaaaagaacagccgag
ggagggccagacgttatagaggagatcggtcagagtaacaatcgaggcaccaacatcctc
cacatcgctctggaccgcggcagccagcagaggacgagcccagagagggagatcttcacc
aaagggatcatccctcgggagctcaacaagaaagacaacagtgacgacagactagtgttg
atcattggtatctttgtcgggctgctcctcgtggtgctcgtcatcatcgtggtggtgctg
ctggtccggtccaagagagagaagaaagaggtacccaagagctccagcagcgcagaaccc
atgatgacacaagccctcagtgacagctcagaggtctaa
DBGET
integrated database retrieval system
