Clinocottus analis (woolly sculpin): 137790248
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Entry
137790248 CDS
T10471
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137790248 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137790248 (prpf8)
Spliceosome [BR:
cana03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137790248 (prpf8)
Complex C
U5 SnRNP specific factors
137790248 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
137790248
NCBI-ProteinID:
XP_068440385
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAATFPYRGVPAGMPPGVPPPVPVPDYMSEEKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDNEEDSSVAEWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYAEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaactttcccctacagaggggtccctgcagggatgccgccaggtgtacctcct
cctgtgcctgtcccggactacatgtctgaggaaaaactgcaagagaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactcagaaaagagaaagtttggctttgtggatgcgcag
aaagaagacatgcctcctgaacatgttcgcaagatcatcagggaccatggagacatgacg
aatagaaagtttcgccatgacaagagggtgtatctcggtgccctcaagtacatgccccat
gctgtactaaagctgctggaaaacatgcctatgccttgggaacagatcagagatgtgccc
gttctctaccacatcactggagctatttcctttgtgaatgaaatcccttgggtcatcgag
ccggtctacatcgcccagtggggcaccatgtggataatgatgcggcgtgagaagcgtgat
cgtcggcatttcaagcggatgcgttttccaccatttgatgatgaggagccgccgctggac
tacgctgacaacatccttgatgtggaaccactggaggcaatccaaatggagctggacaat
gaggaagactcttcagttgcagagtggctctatgagcaccaacccctcaaagacactgcc
aagtttgtgaatggcactacctaccgtcgctggcagttcacactacccatgatgtccaca
ctgtaccgcctggccaatcagctgctcacagaccttgtggatttcaattatttctatctg
tttgaccttaaggccttcttcacttccaaggccttgaatatggccatccctggaggacca
aagtttgagccactggttagggacatcaacctccaggatgaagactggaatgagttcaat
gacatcaacaagatcatcattcgccagccgatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaacttgccgcaccatgtccacctcacctggtatcatacacccaacgtg
gtgtttatcaagacagaggatccagatctcccagcgttctactttgatccgctgatcaac
cccatttcacacagacattctgttaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttcctgagtatgcagagcccttcctcaaggaaaccccactttacacagacaac
actgccaatggcatcgctctgctgtgggcaccgagaccctttaacctccgatctgggcgc
acaaggcgtgccatagatatccccttgatcaagaactggtatcgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcataccagaaactgcttaagtactatgtgctcaat
gctctcaaacacagaccacccaaagcccaaaagaaaaggtacctgttccgctccttcaag
gccaccaagttctttcagtccaccaagctggactgggtggaggttggtctgcaggtttgc
agacagggttacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcccgtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggtaacgcctttcacttgtgcagagaggtgctgcgtctcagcaagctggtg
gtggacagccatgtgcagtacagactgggaaatgttgatgctttccagctgtctgatggt
ttgcagtacatctttgcccatgtcggtcagctgactggcatgtaccgctacaagtacaag
ctgatgagacaaatccgaatgtgcaaagatctgaagcatctcatctactaccggttcaac
actggacctgtgggcaaaggtccaggctgtggcttctgggctcctggctggagagtgtgg
ctgttcttcatgaggggaatcactccactgttggagagatggctgggaaatctgctcgcc
aggcagtttgaaggacgtcactccaagggcgtagccaagaccgtcaccaaacagcgtgtg
gagtctcactttgaccttgagttgcgtgccgctgtgatgcatgacattttggacatgatg
cctgaaggcatcaaacagaacaaggccagaaccatcctgcagcacctcagtgagtcctgg
aggtgctggaaggccaacatcccctggaaggtgccaggcctgcccactcccatcgagaac
atgatcttgcgctacgtgaaggctaaagctgactggtggaccaacactgcccactacaat
cgtgagcgaatccgccgtggagccactgtggacaagacggtgtgcaagaagaacctgggg
aggctgactcgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggcccctacatcacagctgaggaggcggtagccatatacaccaccactgttcactggcta
gagagtcggcggttctcgcccatccctttccctccactgtcctacaaacatgacaccaag
ctgctcatcctggccttggagaggctcaaggaggcatacagtgtgaagtctcgtctgaac
caaagtcagagggaggagctggggctgattgagcaggcctacgacaatcctcacgaggcc
ttgtccaggatcaaacgtcacctgctcacacagagagccttcaaagaggtgggtatcgag
ttcatggacttgtacagtcacctggtgcccgtgtatgatgtagagcccctggagaagatc
acggatgcctaccttgaccagtacctgtggtacgaggcggacaagagacgcctcttccca
ccctggatcaaacctgctgacactgaaccaccaccacttttggtgtacaagtggtgccaa
ggcatcaacaatttacaagacgtgtgggagaccacagagggagagtgcaatgttatgctg
gagtcccgctatgagaagatgtatgagaagatagatttgactttgcttaacaggctgctg
cgtctcattgttgaccacaatattgctgactacatgacagccaagaacaacgtagtcatc
aactacaaggatatgaaccacaccaactcttatggcatcattagggggctccagtttgcc
tcgttcattgtacagtactacggcctggtgatggacctgctagtgctgggcctgcaccga
gccagtgaaatggccggcccacctcagatgcccaatgacttcctcagtttccaagacaca
ccaacggagagtgcccacccgatcagattgtactgccgctacatcgaccgcatccacatc
ttcttcaggttctctgctgatgaggccagagatttgattcagaggtacctgactgagcac
ccagaccccaataatgagaacatagtgggttataacaacaagaagtgctggccccgcgat
gcccgtatgagactgatgaagcacgatgttaacctgggtcgtgccgtgttctgggacatc
aagaaccgcctgcccagatcagtcactactgtccagtgggagaacagctttgtttcggtc
tacagcaaagacaaccctaacctgctcttcaacatgtgtggctttgagtgccgcatcttg
ccaaagtgccgcactagctatgaggagtttactcataaggatggtgtgtggaacctgcag
aacgaggtaaccaaagagaggacagcgcagtgtttcttgcgggtggatgatgaatcaatg
cagcgcttccacaacagagtgcgtcagatcctaatggcctctggatccaccacattcact
aagattgtgaacaaatggaacacggctctgattggtctcatgacatacttccgtgaggct
gtggtcaacacccaggagctcctagacctgctggtgaagtgtgagaacaagatccagacg
cgtatcaagatcggcctgaactccaaaatgcctagtcgcttccctcctgtcgtcttctac
actccaaaggagttgggtggccttggcatgctgtcaatgggccacgtgcttattccacag
tctgaccttcggtggtccaagcagacagatgtgggtatcactcacttcaggtcaggaatg
agccacgaggaagaccagctgattcccaacttgtatcgttacattcagccatgggagagt
gagttcatcgactcccagagggtctgggccgagtatgccctcaagagacaggaggccatc
gcccagaacaggcgtctgaccctggaagatttggaagactcatgggacagaggaatccct
cgtatcaacacacttttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacaataccaggtgctgaagcagaatccgttctggtggactcac
cagcggcacgatggcaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctcggtggagtggagggcatcctggaacatacactcttcaaaggcacttactttcccacc
tgggagggtctcttctgggaaaaggccagtggcttcgaggagtccatgaaatggaagaag
ttgaccaatgcccagcgttctggtctgaaccaaatccccaatcgtcgcttcacactttgg
tggtcacccaccatcaacagagctaacgtgtatgtgggtttccaggtgcaacttgacttg
acaggaatcttcatgcacggcaagatcccaacactgaagatctccctcatccagatcttc
agggctcacttgtggcagaagattcatgagagtgttgtcatggatctctgtcaggtgttt
gatcaagagctggatgcacttgagattgagaccgtgcagaaggagaccatccatcccagg
aagtcgtacaagatgaactcgtcctgtgcagacatcctcctctttgcatcatacaagtgg
aacgtctccagaccatctctgctggccgactccaaggatgtgatggacagcaccaccaca
cagaagtactggatcgacatacagttgcgttggggtgactacgactctcatgacatcgag
cgctatgccagggccaagtttctggactataccaccgacaacatgagtatctacccctcc
cccaccggggtgctgattgccattgacctggcttacaacctccacagtgcctatggtaac
tggttccctggaagcaagcctctgatccagcaggccatggccaagattatgaaggccaac
cctgccctgtacgtgctcagggagcgcatccgcaaaggtctgcagctgtactcctccgag
cccactgagccctacctgtcctcacagaactatggtgaactcttctccaaccagatcatc
tggtttgtagatgacaccaacgtgtacagagtcaccatccacaagacctttgagggtaat
ttgaccacaaagcccatcaatggagctattttcatcttcaaccccaggactggtcagctt
ttcctcaagatcattcacacatctgtgtgggccggacagaaacgtctgggacagctggcc
aaatggaagacagctgaagaagtggctgccctgattcgctctctccccgtggaggagcag
cccaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaaggctctgagttgcagctgcccttccaggcctgtttg
aaggtggagaagtttggagacctaatcctgaaggctacagagcctcagatggtgctgttc
aacctctacgacgactggctcaagacgatctcttcgtacacagccttctctcgactcatc
ctgatcctgagagcgctgcacgtcaacaatgaccgcgccaaagtgatcctgaaacctgac
aagaccacaatcaccgagcctcatcacatctggcccacactcactgacgaggagtggatc
aaggtggaagtgcaactcaaagatctcattctggcagattatggcaaaaagaacaatgtg
aacgtggcctcattgactcagtctgagatccgagacatcatcctgggtatggagatctcc
gctccgtcacagcagcgccagcagattgctgagattgagaagcagaccaaagagcagtcc
cagctcactgccacgcagacacgcacagtcaacaagcatggtgatgagatcatcacctcc
accacctccaactatgagacccagaccttctcctctaagaccgaatggagagtcagggcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcctctgatgacatc
aaggagacgggctacacctacatcctgcccaagaatgtcctcaagaagttcatctgcatc
tcagatctgcgagcacagattgcaggctacctgtatggcaccagtccaccagacaacccg
caggtgaaggagatccgttgcattgttatggtgccacagtgggggacacaccagactgtc
cacctgccaaaccagctgcctggtcatgaataccttaaagaaatggaacccctcggctgg
atacatactcagcccaatgaatcgccccagctgtcccctcaggatgtgaccacccacgcc
aaggtcatggctgacaacccttcttgggacggggagaagaccatcatcattacttgcagc
ttcaccccgggctcgtgcactcttacagcctacaagctgacgcccagtggttacgagtgg
ggccggcagaacacggacaagggcaacaaccctaaaggctacctaccgtcccactatgaa
agagtgcagatgctgctctctgatcgcttcctgggcttcttcatggtgcctgggcaggtg
tcctggaactacaacttcatgggtgttcgccacgaccccaacatgaagtacgatctgcag
ctggccaacccaaaggagttctaccatgaagtccaccggccctcgcacttcctaaacttt
gcctcactgcaggagggtgagatctataatgcggaccgtgaggacatgtatgcctga
DBGET
integrated database retrieval system
