Clinocottus analis (woolly sculpin): 137791014
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Entry
137791014 CDS
T10471
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03440
Homologous recombination
cana03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137791014 (brip1)
03460 Fanconi anemia pathway
137791014 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cana03400
]
137791014 (brip1)
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137791014 (brip1)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
137791014 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
137791014 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
137791014
NCBI-ProteinID:
XP_068441803
LinkDB
All DBs
Position
Unknown
AA seq
1456 aa
AA seq
DB search
MATPPVEYTIGGVKIPFPCKAYPSQLAMMNSIVRGLNKGEHCLLESPTGSGKSLALLCSA
LGWQRAQWDKLKEEKIILEDKSQSDKSCSDDKKSDVPTSCQCVCHRKVSSTAANSSAAAT
PAVVDLTESPCKELTQPLLLAPEQMALPEELQPKKPSVASRLAQKCLSNSSGDCEKDQDD
DDDFKPEDRKRFRAAQPQRKRQRLDQGVIFIDDEQEMSSTIEPSAQAAGLSSSCCSPEPC
SLCRCASAKDGIKDKDGGGKKKIPKIYFGTRTHKQITQITHELRRTVFSGVPMTILSSRG
HTCVNGGVAPHPNRNERCKDLLDNKDGRSCSYYHNVKRIGDQCSLQRVHGLHDAWDIEDL
VTLGKRIRACSYFAARELKKDALIIFCPYNYLLDPMIRESMEIDLTGQIVVLDEAHNIED
CARESASYTLDHQSLMDSTIELDGMVKNNLRRSEHEPLRDFCYGLINWIQDSESLMSERG
FESTCKVWSGKDVLGIFHNMGITAAIFSNLKNNLAAVLEKEKRSIINGEEIVVMFPIISS
ATSMVLKNLFMVLGFMYADDNCRVAEDYRVALQKSYAWTNRVPADTPDARGFFVRPHSRQ
RQSARVRTEVVTLSFWCLNPAVAFSDFSKSVHSIVLTSGTLSPMGSFSSELGVKFTIQLE
ANHVINKSQVWVGTVGSGPHGRKLCATFQNTETFIFQDEVGALLLHVCQVVAKGVLCFLP
SYKMLDKLRDRWTRTGLWEKLQQRKAVIAEPRGGGKGDFDELLQRYYDAIKYCEEERDGA
LLIAVCRGKVSEGLDFTDDNARAVITVGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGSR
WYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRNNPNKYITGLSKWVRQLVQHHDTFN
NAMQSLVAFSQVQQQVEGPPADSQALSSTVSSPNGGQGLLNAFDPQTTPSSCVKPPKLQQ
DTSPSASHFVSHTQLRAAQTEEAEWLSPLAAHPSHQKRTAKSPFAIFNISKSKKFKEKAA
SNCIQHLETSNHSEHQDTHQTATPQTKTGETCLKQGVETSPPSCEREPPSKDNPDEDEED
KGEEDQSVFFTPELFDGEDNLGGPENETQTKSTPRKRLEAEIPIVPSEEPFGSERARGQG
PAAAADGQSSISVRKESTELSQRQPEESIQTHSEEGEQVDNQSGQTGRKRCRLSRSRKPD
TSTPTGGGSGTKSAGKVSQQVKTVGKHKAPKKGPSIRAEVDNETSKQDNFRGLPEAGAAR
YSPTSPAGDGPGSQLTKARAIKVQRSCRRKRRSAKINTVKDHQPCSLGLYCSLCHKELLP
VAHGALQSAVCEDEHLSFLRKYSPDRPTRRCHCAPHQPFMLDQSGSLLLVQSLASMAALR
TALQPYCDGSLTAYNAIWNPEEGSVTRFLQCKGCLSQSPSLSAALIAAEIQCPGEMAQDQ
IWLSPAAVQFCPLTTI
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atggctacacccccagtagagtacaccattggcggggtaaagatccccttcccctgcaag
gcgtatccgtcccagctggctatgatgaattcaatcgtccgaggactgaacaagggggag
cactgcttgctggagagtcccacaggaagtggaaagagcttagctctgctgtgctccgct
ctgggctggcagcgggctcagtgggataaactcaaagaggaaaaaatcattttggaggac
aagagtcagtcggataaaagctgtagcgacgataagaagtccgacgtccccacgtcgtgt
cagtgtgtgtgccacagaaaagtcagcagtactgcagcaaacagttcagcagcagccaca
cctgctgttgtggacctcacagagtcgccctgcaaagagttgacacagccgctgcttcta
gcacctgaacagatggccttacctgaggagttgcagcccaagaaaccgtctgtagcttct
cgtctggcacagaagtgtctgtccaactccagcggcgactgtgagaaggaccaagacgac
gacgacgactttaaaccagaagacaggaagcgctttcgcgctgcccaaccgcagcgcaaa
aggcagcgtctggaccagggagtcatttttattgatgatgagcaagaaatgagctcgacc
attgagccaagcgcccaagcagcgggtctgtcctcatcgtgctgctcccctgagccctgc
tccctgtgtcggtgtgcttcagctaaagacggcatcaaggacaaagacggtggtggaaaa
aagaagattcccaagatctactttggcactcgcacacataaacagataactcagatcacc
cacgagctgaggcgcactgttttctctggagtgcccatgaccatcttatccagtagaggt
cacacatgtgtcaacggaggggtggcgcctcaccccaaccgcaatgaacgctgcaaggat
ctgctggataacaaagatgggaggtcatgcagctactaccacaacgtcaaaaggattggg
gaccagtgcagtctacagcgggtccacggactccatgatgcctgggacattgaggacctt
gttacactgggcaagcggatcagggcatgctcctactttgctgcccgtgaactcaagaag
gacgccttaatcatcttttgtccatataactacctgctggacccaatgatcagagagagt
atggagatcgacctgacaggccagattgtggtgctggacgaagcccacaacattgaggac
tgtgcaagggagagtgccagctacactttggaccaccagagtctgatggattccacgatt
gagcttgacggcatggtcaagaacaacttaagacgctccgaacacgagccactcagggac
ttctgctacggcctgatcaactggatccaggatagcgaaagcctgatgtctgaacgagga
ttcgaaagcacctgtaaggtctggagtggaaaggatgtgctgggcatctttcacaacatg
ggcatcactgctgccatcttcagcaatctaaagaataacctggcagcagtgttggagaaa
gagaagcggtccattatcaatggtgaagagattgtggttatgttcccaatcatcagctcg
gcgacctccatggtcctcaaaaatctcttcatggtgcttggcttcatgtacgccgacgac
aactgcagggtggctgaagactaccgggtagccctacagaagagctacgcttggacaaac
cgagtcccggctgatacgcctgatgcccgaggattttttgttcggccacatagcaggcag
cgccagagcgcccgggtcaggacagaagtcgtcacacttagcttctggtgcctcaacccc
gctgtggctttctctgacttcagtaagtcagtgcacagcattgtgctgacatcaggaacc
ctgtcacccatgggctccttctcctctgaacttggggtgaaattcaccatccagctggag
gccaaccatgttatcaacaagtcccaggtttgggtgggcaccgttggttcaggaccccac
ggcagaaaactctgtgccaccttccaaaatacagaaacgtttatcttccaggacgaagtg
ggtgcgctgctgctccatgtctgccaggtcgtggccaagggtgtgctctgctttttgcct
tcttacaagatgctggacaagctgcgagatcgatggaccaggactggtctctgggagaag
ctgcaacaacggaaagccgtgattgcagagccccgtggtggtggcaaaggggattttgat
gaactgcttcagaggtactacgatgccatcaagtactgtgaggaagaacgagatggagcg
ctgctgatcgctgtctgtaggggcaaagtgagtgaaggactagactttactgatgacaat
gccagggcagtgatcaccgtcggaattcccttcccaaacattaaagatcttcaagtggaa
ctgaagatgaagtacaatgaccaacactgcaaatccagaggtcttctcccaggaagtcgc
tggtacgagattcaggcctacagagctctaaaccaggccctgggaaggtgtatccgacac
aagaatgactggggtgccctaattctcgtggatgaccgattcaggaataatcctaataag
tacatcacaggtctgtcaaaatgggtccgccagctcgtccagcatcatgacaccttcaac
aatgccatgcagtctctggtagcattctctcaagtgcaacagcaggtggaggggcctcct
gcagacagtcaggccctcagctctactgtctcatctccaaatgggggacagggtttgcta
aatgcttttgacccccagacgacccccagctcatgtgtcaaaccgcctaaactgcagcag
gacacgagcccctcggccagccacttcgtttctcatacacagttgagagcggcgcaaacg
gaagaagcagaatggctgagtcccctagcagcccacccatcgcatcaaaaaagaacagct
aagtctccgttcgccattttcaacatcagtaagtcaaagaagtttaaagaaaaagctgcc
agtaattgcatccagcacttggaaacatctaatcactctgagcaccaggacacacatcag
accgccactccacaaacaaagactggagaaacgtgtctgaagcaaggggtggaaacaagc
cctcccagctgtgagagggaaccgccgtcaaaagacaatcctgatgaagacgaggaggat
aagggtgaggaggaccaaagtgtcttctttactccagaacttttcgacggtgaagacaac
ctaggcggaccagagaacgagacgcagactaagtccactcccaggaagcgtttggaggca
gagatcccgattgtgccgtcagaagaaccttttggctctgagcgggctcgaggtcaaggg
ccagctgctgctgctgatggacagagttctatttcagtcagaaaggagagcacagagctg
tcacagagacagccagaagaaagtatacagacacacagtgaggagggagagcaggtggat
aaccagagcgggcagacaggcaggaagcgttgtaggttgtccagatccagaaagccagac
acctctactccaacaggtggaggcagtggaaccaagagtgcagggaaagtcagtcagcag
gttaagaccgtggggaaacacaaagctcctaagaaagggccttccataagggctgaggtt
gacaatgagacgtccaaacaagacaactttaggggactgccagaagccggagcagcacgg
tatagtcctactagcccagcaggggatggtccaggatctcaactcaccaaagcaagagct
attaaagtacagagatcttgcagacggaaaaggagatctgcaaaaataaatacagtcaaa
gaccaccaaccatgctctttgggactctactgctctctgtgtcacaaggagctacttcct
gtggctcatggtgcactgcaaagtgccgtctgtgaggatgaacatctgtcttttctgaga
aaatacagtcccgaccggccgacccgccgctgccattgtgcaccacatcagccatttatg
ttggaccagtcgggctcactgctgctggtccaaagtcttgcatcaatggcggccctgaga
actgctctgcaaccctactgtgatggcagtttaactgcatacaatgccatctggaatcct
gaggagggctcagttaccagatttctgcagtgtaaaggctgtttgtctcaaagcccctct
ctgtctgcggcgctaattgcagcagagatccagtgccctggagaaatggctcaagatcag
atatggttgtcccctgcagcagtccagttttgccctctcaccactatttaa
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integrated database retrieval system
