KEGG   Clinocottus analis (woolly sculpin): 137791090
Entry
137791090         CDS       T10471                                 
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
cana  Clinocottus analis (woolly sculpin)
Pathway
cana04382  Cornified envelope formation
cana04510  Focal adhesion
cana04512  ECM-receptor interaction
cana04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cana00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    137791090 (col4a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    137791090 (col4a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    137791090 (col4a3)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    137791090 (col4a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cana04147]
    137791090 (col4a3)
   00536 Glycosaminoglycan binding proteins [BR:cana00536]
    137791090 (col4a3)
Exosome [BR:cana04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   137791090 (col4a3)
Glycosaminoglycan binding proteins [BR:cana00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   137791090 (col4a3)
SSDB
Motif
Pfam: Collagen C4 Pentapeptide_4
Other DBs
NCBI-GeneID: 137791090
NCBI-ProteinID: XP_068441897
LinkDB
Position
Unknown
AA seq 1749 aa
MKYYRVKYYRMKYYRVKYCRMKYYRVKYCRMKYCKMKYCRMKYCRMKYCKMKYCRMKYCR
MNSTSCTDPSGPSRAEPSRAEPSRAKPPPLRVPSAGSPRCVSVLMEPPRGQTRRFVPLLV
LMLCSAAGRAERVCHCSGKSLCHCDGVKGQKTTQGESGFLGYDGLPGVIGYPGYEGSQGP
AGEKGDEGTAGGSGLKGSRGLPGKPGFPGPPGLPGLPGHEGTIGLPGLPGCNGTKGDVGY
PGFSGTQGPAGLQGTPGLRGAKGHSFVFPSTPGIKGATGPQGRDGEQGLDGDPGDPGAPG
PPGAAGLPGSPGLLGLRGEKGQEGPSPVIPGPRGQRGDRGPQGIPGQKGIKLYAEGPKEL
KGEPGEAGLKGCPGLRGVAGKPAVKGEKGERGDPGSLGKPGKDGVLGELGDQGVPGDRGY
FGPPGIEGATGEKGERGPPGLPGETDFKHRFLKGRRGAPGPRGPLGVPGEQGLIGFPGLQ
GEPGVATTGPPGPQGPPGSSGPNGEPGEPGPLTFGPPDFLPGETGPPGARGPKGPVGFPG
VRGEEGGPGEKGEMCSVCSLISGPVGPPGKPGEPGEDGATGSVGFPGPEGDKGVKGVQGP
AGPQGPFGLPGLSGAPGPVGDAGIMQRVGQKGSEGDRGPPGRLGSEARDGSPGSPGPQGV
LGQKGNPGPLGPKGERGPLGETGFRGLTGQVGPPGPPGIGYPGPPGSKGNVGVMGQRGDP
GKPGEKGSPGEITTFPGDRGQKGTKGLPGNPGPEGITGFLGVQGSAGPWGEKGDEGFSVQ
GPPGFPGVKGPEGPPGAPGAPSFGIKGRAGPSGPPGMPGPKGSRGIGFPGQQGQSGPHGE
DGPVGPQGNLGPQGSDGAPGPRGQDGPPGPKGRSGLDGLPGPVGPFGPCSPGAPGPEGER
GRTGIIGFTGMRGPKGGRGDPGQLGLGAFGPQGPYGVPGFDGTPGPVGEVGLKGLRGTNG
EPGSTGIRGDVGPPGALGGPGDDGRPGETGPTGPKGQMAVDGVSGSQGPQGPQGDRGETG
PKGFPTVVEVYGDPGEPGDPGYTGLTGSKGERGPKGPQGLDGRTGRPGDGGPQGPPGDTG
RAGERGPPGPCGTNGNQGEMGRPGFKGDKGCSGPCGEPGSEGSPGPGGQKGAKGESSTPG
PGSKGPPGEKGNPGYPGTPGIKGEPGDIGSLGSPGACGPCGPKGLSGPPGCRGPPGTPGG
KGCDGPPGKNGPPGPTGLTGNKGAPGDPGPAGSRGNQGQDGIPGPPGEKGAMGAPGIGPR
GPDGKTGPPGYTGEQGPPGACGPPGPHGPGGNPGCPGPPGLPGPPGCVGQEGICIEGSKG
DNGFPGRRGPKGPTGFRGPPGPPGPGFKGEKGSKGATGFQGPPGYPGDSGPGGKPGEDRP
PGPRGLEGQMGATGVTGPAGLKGDDGPSGSVGPAGPPGPPGRRGQRGKDVTREVVLLPGD
EGSPGAPGLRGEYGPPGAQGIPGGPGLKGLRGRAGGRGQGGRPGLTGEQGDQGLFGAKGA
EGAAGALGAKGARGRSGPCINAPENDGFMFTRHSQSLYVPECPAGSTEMYSGYSLLFING
NNRAHGQDLGTLGSCLPRFTTMPFLFCNTDSTCRYASRNDYSYWLSTDQPLGSMPLISGD
SLKNYISRCTVCEARANVMAVHSQTSLIPECPSGWDALWLGYSFVMETGVGAEGSGQPLA
SPGSCLENFRKIPFIECHGRGTCNYYTDSYSYWLAALNPDDMFSKPRPQTEEGDFPALIS
RCGVCMKQL
NT seq 5250 nt   +upstreamnt  +downstreamnt
atgaagtactacagggtgaagtactacaggatgaagtactacagggtgaagtactgcagg
atgaagtactacagggtgaagtactgcaggatgaagtactgcaagatgaagtactgcagg
atgaagtactgcaggatgaagtactgcaagatgaagtactgcaggatgaagtactgcagg
atgaacagcaccagctgcacggacccctctggaccgagccgagccgagccgagccgagcc
gagccgagccgagccaagccgcctcccctccgcgtcccgtcagcggggagtccgcgctgc
gtgtccgtcctcatggagccgccgcgcggccagacgcgcaggttcgtcccgctgctggtt
ctgatgctctgcagcgccgcgggacgcgccgagagggtgtgtcactgcagcgggaagtct
ctctgtcactgtgacggggtcaaaggtcaaaagaccacccagggcgaatccggcttcctc
ggctacgacgggcttcccggagtgatcggttaccccggctacgagggcagccagggcccg
gctggggaaaagggggatgagggaacagccggaggttcaggactgaaaggctctcggggt
cttccaggtaaaccaggtttcccaggacctccaggactgccgggactccctggacatgaa
ggaaccatcggcctaccaggactcccaggatgcaatgggacaaagggagatgttggctac
ccagggttctctgggacccagggacctgccggccttcagggtacacctggactgcgaggt
gcaaagggacactcgttcgtcttcccctccactccgggtattaaaggagcaacaggacct
caaggacgagacggagaacaggggctggatggagatccaggtgatccaggtgcaccggga
ccacctggagccgctggtcttcctggaagtcctgggttgctggggttacgcggagaaaag
ggtcaggaagggccgagtccagtgataccaggccctcgtggacagaggggtgatcgtggc
ccacaagggatccctggacagaaaggaattaaactgtatgctgaaggacccaaagaacta
aagggagaaccaggagaagctggactgaaaggttgtcctggacttcgtggagtggcgggg
aaaccggcggttaaaggagaaaagggcgagcgaggtgatcctggctcactgggtaaacca
ggaaaggatggagtcctgggagagctgggagatcagggcgtcccaggggatcgagggtac
ttcgggcctccaggtatcgaaggagccacgggggagaaaggtgaacgtggtcctccaggt
cttccaggagagacagacttcaaacacagattcctgaagggccggcgtggggcccccgga
cctcgcggacccctgggcgtcccaggagaacaaggacttattggttttccgggcctgcag
ggcgagccaggtgtggccaccaccggtccaccgggccctcaggggccgcctggctcatct
ggacccaacggagaaccgggagaaccggggcccctcacttttgggcccccggacttcctg
ccgggagaaacggggcctccaggagctcgaggtccgaagggcccggtggggttccctgga
gtccgaggggaggaaggagggccaggtgagaagggcgagatgtgttctgtctgttcgctg
atctctggccccgtgggacctccaggtaaaccaggagagccaggtgaagacggggcgaca
ggatctgttggttttccgggacccgaaggtgacaaaggggtcaaaggtgtccaaggacca
gctggtccacaggggccctttggcctgcccggcctctcgggggccccaggacccgttggg
gacgctgggatcatgcagagagtcgggcagaagggctcagagggcgaccgggggcccccg
gggcggctgggctcagaggcgagagacggatctccgggatctccaggaccgcaaggggtt
ctgggacagaaaggaaacccagggcctctggggccaaaaggtgagaggggcccgctcggg
gagaccggcttcagaggactaacgggacaggtaggacctccaggaccacctggaataggg
tatccaggccccccgggatctaaaggcaatgtgggagtcatgggacagcgtggagatcct
gggaaaccaggtgaaaaaggttctccaggcgaaatcacaacttttccaggagatcggggg
cagaaaggaacaaaaggtttacctggaaaccccggacccgaaggtatcaccgggtttcta
ggtgttcaaggatctgctgggccatggggagaaaagggagatgagggtttttctgtccag
gggcctccaggctttccaggggtcaaaggacccgagggaccccctggagctccaggtgct
ccaagttttggtatcaaaggacgggcggggccatcaggccccccaggaatgccgggtccc
aaggggagcagagggatcgggttcccgggccagcagggtcagtccggtcctcacggggaa
gacggccccgtggggccccaaggaaaccttggaccacaaggatcagatggagcaccagga
cctcggggacaagatggacctcctggacccaaaggccgtagtggtctggatggtttacct
ggtcccgttggtccctttggaccgtgttcacctggcgctcctggacctgaaggcgagcga
ggacggacgggcatcatcggattcacagggatgcggggaccaaagggaggcaggggtgac
cctggacagctgggcctgggggccttcgggcctcagggcccttacggggtacccgggttc
gatggcactccggggccagtaggagaagttggactgaagggcctgagagggaccaatggg
gagccgggaagcacaggcatcaggggagacgtgggtcctccaggggccctcgggggtcca
ggggacgatggaagaccaggagagacgggaccgacaggacccaaaggtcagatggctgta
gacggggtcagcggctctcaggggcctcaggggccccagggggacagaggagaaactgga
ccaaaaggattcccgactgtcgtggaggtgtatggagaccctggagaacccggagaccct
gggtacacaggtctcactggcagcaaaggagaaaggggccccaaggggccacagggcctc
gatgggagaaccggcagacccggagacggaggaccgcaaggacctcctggagacaccggc
agagctggagaaagaggtccacctggtccttgtgggaccaacggcaaccagggagagatg
gggaggccaggctttaaaggagacaaaggttgttcggggccttgtggggaacctggatca
gaaggatcaccaggaccaggagggcagaaaggtgctaaaggagagtcaagtacacctgga
cctggatctaaaggacctccaggagagaagggaaatccaggatatccaggaacaccaggt
ataaaaggagaaccaggagatattggaagcttaggttccccaggagcatgtggcccctgt
ggccccaaaggactttctggacccccaggatgcagaggtcctcctgggactcctggggga
aagggttgtgatggtcctccagggaagaatggccctccaggacccaccggcctcacaggg
aacaagggagctcctggagatcctggtccagcaggttccagaggaaaccagggacaggac
ggcataccgggacctcctggagagaagggagccatgggagctccgggaatcgggccccgg
ggcccagacgggaagacaggtccacctgggtacaccggggagcagggtcctcctggtgcc
tgtggtccacctgggccccatggtcctggaggaaacccaggctgtcctggtcctcctgga
cttcctggtcctcctggttgtgttggccaggagggaatctgcattgaaggaagcaaagga
gacaatggattccctggaagacgaggaccaaaagggccgacaggctttcggggtcctcct
ggccctccaggtcctggttttaaaggagagaaaggatctaaaggagcaaccggtttccaa
ggaccacctggctaccctggtgactctggtcctgggggaaaaccgggtgaagacagacca
ccaggccctcgaggacttgaaggccagatgggagccactggtgtgactggacctgctggt
ctgaagggagacgacggaccatcagggtccgttggcccagcaggacctccaggaccacct
gggaggagaggccagaggggaaaggacgtaaccagggaggtggtgctcctgccaggagac
gaaggctcacctggagccccaggactcagaggagaatacgggcccccaggggcccaaggg
atacccggaggtccaggtctgaagggactgagaggacgagctggtggacgaggacaaggc
ggccgacctggactgaccggggaacagggagaccagggtctctttggagcaaaaggtgct
gaaggtgctgcaggtgcgctcggtgctaaaggtgctcggggtcgatcgggtccctgcatc
aacgcaccggagaacgacggcttcatgttcaccagacacagccagagcctctacgtccca
gaatgccctgcaggatctactgagatgtacagcgggtactcgctgctgttcatcaacgga
aacaaccgagctcacggacaagacctgggtactctaggtagttgtctacctcgcttcacc
accatgcccttcctgttctgtaacactgacagcacctgtcgctacgcctcacgcaacgac
tactcctattggctgtccaccgaccaaccgctgggcagcatgccgctcatctctggggac
tcactgaagaattacatcagccggtgcaccgtgtgtgaggccagagccaacgtgatggcg
gtccacagtcagaccagtctgattccagagtgtccgtcgggctgggacgctctctggttg
ggatactccttcgtcatggagacgggcgtgggggcggaggggtcgggtcagcctctggcc
tcacctgggtcctgcctggagaacttcaggaagattcccttcatcgagtgtcacggcaga
ggaacctgcaactactacaccgactcctacagctactggctggctgcgctcaaccccgac
gacatgttcagcaagccacgcccccagacggaggaaggagacttcccagctctcatcagc
cgctgtggagtctgcatgaagcagctgtga

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