Clinocottus analis (woolly sculpin): 137791090
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Entry
137791090 CDS
T10471
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04382
Cornified envelope formation
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137791090 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137791090 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137791090 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137791090 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137791090 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137791090 (col4a3)
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137791090 (col4a3)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137791090 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Pentapeptide_4
Motif
Other DBs
NCBI-GeneID:
137791090
NCBI-ProteinID:
XP_068441897
LinkDB
All DBs
Position
Unknown
AA seq
1749 aa
AA seq
DB search
MKYYRVKYYRMKYYRVKYCRMKYYRVKYCRMKYCKMKYCRMKYCRMKYCKMKYCRMKYCR
MNSTSCTDPSGPSRAEPSRAEPSRAKPPPLRVPSAGSPRCVSVLMEPPRGQTRRFVPLLV
LMLCSAAGRAERVCHCSGKSLCHCDGVKGQKTTQGESGFLGYDGLPGVIGYPGYEGSQGP
AGEKGDEGTAGGSGLKGSRGLPGKPGFPGPPGLPGLPGHEGTIGLPGLPGCNGTKGDVGY
PGFSGTQGPAGLQGTPGLRGAKGHSFVFPSTPGIKGATGPQGRDGEQGLDGDPGDPGAPG
PPGAAGLPGSPGLLGLRGEKGQEGPSPVIPGPRGQRGDRGPQGIPGQKGIKLYAEGPKEL
KGEPGEAGLKGCPGLRGVAGKPAVKGEKGERGDPGSLGKPGKDGVLGELGDQGVPGDRGY
FGPPGIEGATGEKGERGPPGLPGETDFKHRFLKGRRGAPGPRGPLGVPGEQGLIGFPGLQ
GEPGVATTGPPGPQGPPGSSGPNGEPGEPGPLTFGPPDFLPGETGPPGARGPKGPVGFPG
VRGEEGGPGEKGEMCSVCSLISGPVGPPGKPGEPGEDGATGSVGFPGPEGDKGVKGVQGP
AGPQGPFGLPGLSGAPGPVGDAGIMQRVGQKGSEGDRGPPGRLGSEARDGSPGSPGPQGV
LGQKGNPGPLGPKGERGPLGETGFRGLTGQVGPPGPPGIGYPGPPGSKGNVGVMGQRGDP
GKPGEKGSPGEITTFPGDRGQKGTKGLPGNPGPEGITGFLGVQGSAGPWGEKGDEGFSVQ
GPPGFPGVKGPEGPPGAPGAPSFGIKGRAGPSGPPGMPGPKGSRGIGFPGQQGQSGPHGE
DGPVGPQGNLGPQGSDGAPGPRGQDGPPGPKGRSGLDGLPGPVGPFGPCSPGAPGPEGER
GRTGIIGFTGMRGPKGGRGDPGQLGLGAFGPQGPYGVPGFDGTPGPVGEVGLKGLRGTNG
EPGSTGIRGDVGPPGALGGPGDDGRPGETGPTGPKGQMAVDGVSGSQGPQGPQGDRGETG
PKGFPTVVEVYGDPGEPGDPGYTGLTGSKGERGPKGPQGLDGRTGRPGDGGPQGPPGDTG
RAGERGPPGPCGTNGNQGEMGRPGFKGDKGCSGPCGEPGSEGSPGPGGQKGAKGESSTPG
PGSKGPPGEKGNPGYPGTPGIKGEPGDIGSLGSPGACGPCGPKGLSGPPGCRGPPGTPGG
KGCDGPPGKNGPPGPTGLTGNKGAPGDPGPAGSRGNQGQDGIPGPPGEKGAMGAPGIGPR
GPDGKTGPPGYTGEQGPPGACGPPGPHGPGGNPGCPGPPGLPGPPGCVGQEGICIEGSKG
DNGFPGRRGPKGPTGFRGPPGPPGPGFKGEKGSKGATGFQGPPGYPGDSGPGGKPGEDRP
PGPRGLEGQMGATGVTGPAGLKGDDGPSGSVGPAGPPGPPGRRGQRGKDVTREVVLLPGD
EGSPGAPGLRGEYGPPGAQGIPGGPGLKGLRGRAGGRGQGGRPGLTGEQGDQGLFGAKGA
EGAAGALGAKGARGRSGPCINAPENDGFMFTRHSQSLYVPECPAGSTEMYSGYSLLFING
NNRAHGQDLGTLGSCLPRFTTMPFLFCNTDSTCRYASRNDYSYWLSTDQPLGSMPLISGD
SLKNYISRCTVCEARANVMAVHSQTSLIPECPSGWDALWLGYSFVMETGVGAEGSGQPLA
SPGSCLENFRKIPFIECHGRGTCNYYTDSYSYWLAALNPDDMFSKPRPQTEEGDFPALIS
RCGVCMKQL
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgaagtactacagggtgaagtactacaggatgaagtactacagggtgaagtactgcagg
atgaagtactacagggtgaagtactgcaggatgaagtactgcaagatgaagtactgcagg
atgaagtactgcaggatgaagtactgcaagatgaagtactgcaggatgaagtactgcagg
atgaacagcaccagctgcacggacccctctggaccgagccgagccgagccgagccgagcc
gagccgagccgagccaagccgcctcccctccgcgtcccgtcagcggggagtccgcgctgc
gtgtccgtcctcatggagccgccgcgcggccagacgcgcaggttcgtcccgctgctggtt
ctgatgctctgcagcgccgcgggacgcgccgagagggtgtgtcactgcagcgggaagtct
ctctgtcactgtgacggggtcaaaggtcaaaagaccacccagggcgaatccggcttcctc
ggctacgacgggcttcccggagtgatcggttaccccggctacgagggcagccagggcccg
gctggggaaaagggggatgagggaacagccggaggttcaggactgaaaggctctcggggt
cttccaggtaaaccaggtttcccaggacctccaggactgccgggactccctggacatgaa
ggaaccatcggcctaccaggactcccaggatgcaatgggacaaagggagatgttggctac
ccagggttctctgggacccagggacctgccggccttcagggtacacctggactgcgaggt
gcaaagggacactcgttcgtcttcccctccactccgggtattaaaggagcaacaggacct
caaggacgagacggagaacaggggctggatggagatccaggtgatccaggtgcaccggga
ccacctggagccgctggtcttcctggaagtcctgggttgctggggttacgcggagaaaag
ggtcaggaagggccgagtccagtgataccaggccctcgtggacagaggggtgatcgtggc
ccacaagggatccctggacagaaaggaattaaactgtatgctgaaggacccaaagaacta
aagggagaaccaggagaagctggactgaaaggttgtcctggacttcgtggagtggcgggg
aaaccggcggttaaaggagaaaagggcgagcgaggtgatcctggctcactgggtaaacca
ggaaaggatggagtcctgggagagctgggagatcagggcgtcccaggggatcgagggtac
ttcgggcctccaggtatcgaaggagccacgggggagaaaggtgaacgtggtcctccaggt
cttccaggagagacagacttcaaacacagattcctgaagggccggcgtggggcccccgga
cctcgcggacccctgggcgtcccaggagaacaaggacttattggttttccgggcctgcag
ggcgagccaggtgtggccaccaccggtccaccgggccctcaggggccgcctggctcatct
ggacccaacggagaaccgggagaaccggggcccctcacttttgggcccccggacttcctg
ccgggagaaacggggcctccaggagctcgaggtccgaagggcccggtggggttccctgga
gtccgaggggaggaaggagggccaggtgagaagggcgagatgtgttctgtctgttcgctg
atctctggccccgtgggacctccaggtaaaccaggagagccaggtgaagacggggcgaca
ggatctgttggttttccgggacccgaaggtgacaaaggggtcaaaggtgtccaaggacca
gctggtccacaggggccctttggcctgcccggcctctcgggggccccaggacccgttggg
gacgctgggatcatgcagagagtcgggcagaagggctcagagggcgaccgggggcccccg
gggcggctgggctcagaggcgagagacggatctccgggatctccaggaccgcaaggggtt
ctgggacagaaaggaaacccagggcctctggggccaaaaggtgagaggggcccgctcggg
gagaccggcttcagaggactaacgggacaggtaggacctccaggaccacctggaataggg
tatccaggccccccgggatctaaaggcaatgtgggagtcatgggacagcgtggagatcct
gggaaaccaggtgaaaaaggttctccaggcgaaatcacaacttttccaggagatcggggg
cagaaaggaacaaaaggtttacctggaaaccccggacccgaaggtatcaccgggtttcta
ggtgttcaaggatctgctgggccatggggagaaaagggagatgagggtttttctgtccag
gggcctccaggctttccaggggtcaaaggacccgagggaccccctggagctccaggtgct
ccaagttttggtatcaaaggacgggcggggccatcaggccccccaggaatgccgggtccc
aaggggagcagagggatcgggttcccgggccagcagggtcagtccggtcctcacggggaa
gacggccccgtggggccccaaggaaaccttggaccacaaggatcagatggagcaccagga
cctcggggacaagatggacctcctggacccaaaggccgtagtggtctggatggtttacct
ggtcccgttggtccctttggaccgtgttcacctggcgctcctggacctgaaggcgagcga
ggacggacgggcatcatcggattcacagggatgcggggaccaaagggaggcaggggtgac
cctggacagctgggcctgggggccttcgggcctcagggcccttacggggtacccgggttc
gatggcactccggggccagtaggagaagttggactgaagggcctgagagggaccaatggg
gagccgggaagcacaggcatcaggggagacgtgggtcctccaggggccctcgggggtcca
ggggacgatggaagaccaggagagacgggaccgacaggacccaaaggtcagatggctgta
gacggggtcagcggctctcaggggcctcaggggccccagggggacagaggagaaactgga
ccaaaaggattcccgactgtcgtggaggtgtatggagaccctggagaacccggagaccct
gggtacacaggtctcactggcagcaaaggagaaaggggccccaaggggccacagggcctc
gatgggagaaccggcagacccggagacggaggaccgcaaggacctcctggagacaccggc
agagctggagaaagaggtccacctggtccttgtgggaccaacggcaaccagggagagatg
gggaggccaggctttaaaggagacaaaggttgttcggggccttgtggggaacctggatca
gaaggatcaccaggaccaggagggcagaaaggtgctaaaggagagtcaagtacacctgga
cctggatctaaaggacctccaggagagaagggaaatccaggatatccaggaacaccaggt
ataaaaggagaaccaggagatattggaagcttaggttccccaggagcatgtggcccctgt
ggccccaaaggactttctggacccccaggatgcagaggtcctcctgggactcctggggga
aagggttgtgatggtcctccagggaagaatggccctccaggacccaccggcctcacaggg
aacaagggagctcctggagatcctggtccagcaggttccagaggaaaccagggacaggac
ggcataccgggacctcctggagagaagggagccatgggagctccgggaatcgggccccgg
ggcccagacgggaagacaggtccacctgggtacaccggggagcagggtcctcctggtgcc
tgtggtccacctgggccccatggtcctggaggaaacccaggctgtcctggtcctcctgga
cttcctggtcctcctggttgtgttggccaggagggaatctgcattgaaggaagcaaagga
gacaatggattccctggaagacgaggaccaaaagggccgacaggctttcggggtcctcct
ggccctccaggtcctggttttaaaggagagaaaggatctaaaggagcaaccggtttccaa
ggaccacctggctaccctggtgactctggtcctgggggaaaaccgggtgaagacagacca
ccaggccctcgaggacttgaaggccagatgggagccactggtgtgactggacctgctggt
ctgaagggagacgacggaccatcagggtccgttggcccagcaggacctccaggaccacct
gggaggagaggccagaggggaaaggacgtaaccagggaggtggtgctcctgccaggagac
gaaggctcacctggagccccaggactcagaggagaatacgggcccccaggggcccaaggg
atacccggaggtccaggtctgaagggactgagaggacgagctggtggacgaggacaaggc
ggccgacctggactgaccggggaacagggagaccagggtctctttggagcaaaaggtgct
gaaggtgctgcaggtgcgctcggtgctaaaggtgctcggggtcgatcgggtccctgcatc
aacgcaccggagaacgacggcttcatgttcaccagacacagccagagcctctacgtccca
gaatgccctgcaggatctactgagatgtacagcgggtactcgctgctgttcatcaacgga
aacaaccgagctcacggacaagacctgggtactctaggtagttgtctacctcgcttcacc
accatgcccttcctgttctgtaacactgacagcacctgtcgctacgcctcacgcaacgac
tactcctattggctgtccaccgaccaaccgctgggcagcatgccgctcatctctggggac
tcactgaagaattacatcagccggtgcaccgtgtgtgaggccagagccaacgtgatggcg
gtccacagtcagaccagtctgattccagagtgtccgtcgggctgggacgctctctggttg
ggatactccttcgtcatggagacgggcgtgggggcggaggggtcgggtcagcctctggcc
tcacctgggtcctgcctggagaacttcaggaagattcccttcatcgagtgtcacggcaga
ggaacctgcaactactacaccgactcctacagctactggctggctgcgctcaaccccgac
gacatgttcagcaagccacgcccccagacggaggaaggagacttcccagctctcatcagc
cgctgtggagtctgcatgaagcagctgtga
DBGET
integrated database retrieval system