Clinocottus analis (woolly sculpin): 137791404
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Entry
137791404 CDS
T10471
Name
(RefSeq) synaptopodin
KO
K21112
synaptopodin
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
137791404
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Calsarcin
Motif
Other DBs
NCBI-GeneID:
137791404
NCBI-ProteinID:
XP_068442430
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MEMEKGHTSIRRGVSWSPGGLRKPLQATHNTHTPGTECNASWETTGFNKEQMSRKTNLTR
SASLSEKELKEARVRSQIIAAQLTVPSNSSSRGVQLFNRRKQRVSAFTLESCGEGSGTDR
AKNVKTDPSSNKLTWAERSTEEKDRDLNFKNSSTKPLSSSPGRVHSGGDIIEESGQDFQR
GDYMEDIVIQERHFLPVKEEQEEEEEAGDKIHEDKVKDEIPPGSNNSDPVLMRHDEEEAD
THMGHTGSAPPGKLHNGCQSTSGTERVSVPTSKQTNTIINRTARPFFSPLTVQSPEAASP
VMEIPPPPSYATPPLPAISAPQPLAFSPPPPPPSYPTPPLPAFTNQPPQTYYSSPPPMSP
FMPPSFNTPPQFPMSSVSQYPPMPHYGPPTAPRPSTFVPQPAGERKPITQIKTGILEEGA
ARRGNRKSMFTFKEKTVVAPNPELLSLVQGVDERKKHGHRSVPEPASEEELLALGAEASN
FLAKEEDRAEDARAPEWASCLKTSRTRPKEEHQPEQTLTNVSGKGAELFAKRQSRMEKYV
VEKQNAGQIRSPSPTMSLPPSWVYPSNMPGRVKAIAKNSDMSAQLSQNLKAQQAVKQKPR
QKAAAPEPIPEAPPLENGCTQIEMDLSRHKPYQLSSSLFVLNPVKDPISTLPRAAPLSKN
LISSQSFSRKASLPSNPPHFSGQPMSPQLPLSPRRGAEYRPDSACVEPRTSSSMAAFSPE
RVSSPRSGVQAPRPTFSAKKAGIAPQTPKDSFPVETPSETATPTRTPSLTRRFSSPEGPA
AGTWTPSLQTNRPSTTIFSRSVTSPVSSSRGTRCQSPKASQNIHLSTVTSTTTSRPSHTS
TATSPRSPPWGSRCQSPMVSQNTQPSSISSNPGFRPSQTSTTTSPRSPPWGSRCQSPMVS
QHTQSSTISFVPTSRPTQTSTATSPVSPPWGSRSQSPAFSQTSLSFQATKPLYTSSVTSP
VPPPKDSRCMSPIGNNPDSKANHRLLAKNIINAAKRKNSPSPGALSGHSFPISPLGNSHQ
GYDCHKPPISPFQSRAFGAQSPTFTSPPPTPTQRICSPVRLYNTRSLTDSDASVESEDSG
LRSPGSHSYNTCPRGWGSSLRVKRSTVSTDL
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagaagggacatacgtctatcaggaggggcgtgagctggagtccgggagga
ttgagaaaaccacttcaggcaacacacaacacacacactcctgggacagagtgcaatgca
tcatgggaaacgacaggattcaacaaagaacagatgagccgaaaaacaaatctgaccagg
agtgccagtttatcagagaaggagctgaaggaggctcgtgtcaggagtcagatcatcgct
gctcagctcaccgtcccgtccaactccagctccagaggcgtgcagctcttcaaccggcga
aaacagagggtcagcgccttcacgctcgaaagctgtggagaggggtcagggacggacaga
gctaagaatgtaaaaacagacccttcatctaacaaactaacatgggcagagaggagcact
gaggaaaaggacagagacctgaactttaagaacagctctactaagccactctcgtcgtca
cctgggagggtccactcaggaggtgatatcatagaagaatcaggtcaggattttcagagg
ggagactacatggaagacattgttatccaagagagacatttcctccctgtcaaggaggag
caggaggaagaggaagaggcaggagataaaatccatgaggacaaagtcaaggatgagatt
ccccctggaagtaataatagtgatccagttctgatgaggcatgatgaagaggaggcagac
actcatatgggccacacagggtcagctccccctggaaagcttcataatggctgccagagt
acctctggaactgagagggtgtctgtgcccacatccaagcagacaaacaccatcatcaat
cgaactgccaggccctttttctcgccgctgacagtgcagtccccagaggcggccagccct
gtcatggaaattccccctcctccatcctatgccactcctcctctccctgctatctctgcc
cctcaaccattggcattctcacctccacctccgcctccgtcatatcccacacctcctcta
ccggcctttacaaaccaacctccgcagacctactactccagtccacctccgatgtcccct
tttatgcctccttcctttaatacaccaccccagttcccgatgtcttctgtgtctcagtac
ccacccatgccccattatggccctcccacagccccaaggccttccacttttgttcctcag
cctgctggagagaggaagccgataacacaaatcaaaacaggaatacttgaggagggtgct
gcgagaagggggaataggaagtcaatgttcacattcaaagagaagacagttgtcgcgccg
aaccctgagctgctctctctggtgcaaggggtggatgaaaggaagaaacatggacataga
tctgtgcccgagccggcatcggaagaggagttgctggcgctgggggcagaggcctccaac
ttcctcgccaaggaagaggacagagccgaggatgcaagagctccagagtgggcttcttgc
ctgaagacctccaggacccgtccaaaggaagagcaccagccagagcagaccctcaccaat
gtatcaggaaagggggctgagctatttgccaagcgtcagtccaggatggagaaatacgtc
gttgagaagcaaaatgcaggacaaattaggtctccttctcccacgatgtctctgccacca
tcttgggtgtacccatcaaacatgcccggcagggtcaaggctattgctaaaaactctgac
atgagtgctcagctttcacaaaacctaaaggcccaacaagcagtcaagcaaaaaccaaga
caaaaagctgcagcaccagagccaattccagaggcccctcctttagaaaatggttgcacc
cagatagagatggatctgtcaaggcacaagccctaccagctttcctcttctctctttgtc
ctcaacccagtcaaggaccccattagtaccctacccagagcagcacccctgtccaagaac
ctgatatcttcccagtctttctctcgaaaggcttctttacccagtaaccctcctcacttc
agtggccaacctatgtcgccacagctgcctctcagccccagaagaggagcggaatatcgg
ccagattcagcctgcgtggagccgagaaccagctcttctatggcggctttttctccagag
cgagtgtcctctcctcggtcaggggtccaggcgccaaggccaacgttttctgccaagaag
gcagggattgcgccacagacaccaaaagattccttcccagtggaaacgcccagtgagacg
gccacgccaaccaggacgcccagcctcaccagacgtttcagcagcccggagggccccgcc
gccgggacctggactcccagcctccaaactaatcggccctccaccaccatctttagccgc
tcagttacttcccctgtatcctcttccaggggtacaagatgccaatcccctaaggccagt
cagaatatccatttatccacagttacctccactacaacatctagaccctctcacacatct
acagccacctctccacgctctcctccctggggttcaagatgtcaatccccgatggtgagc
cagaatacccagccctccagcatctcctccaatcctggttttagaccatcccaaacgtct
acgactacttccccgcgttctcctccttggggttcaagatgccagtccccaatggtaagc
caacatacccagtcttccaccatttcttttgttcctacttccagaccaacccaaacatct
acagccacatctcctgtctctcctccttggggctcacgttcccagtctcctgccttctct
cagaccagtttatccttccaggctactaaacctctgtacacatcctctgtcacctctcct
gttcccccacccaaagacagtcgctgcatgtcccctattggtaataacccagactctaaa
gccaaccaccgcctcctggctaagaacatcatcaatgcagccaaacgtaaaaacagcccc
tcccctggcgcactgagcggtcacagcttccccatctcacctttgggaaattcccaccaa
ggctacgactgtcacaaaccacccattagcccgttccagtcgcgggcatttggtgcccag
tcccctacattcaccagccctcctccaaccccaacgcagaggatctgctcccctgtgagg
ctctacaacactcgctccctcacagactctgatgcctctgttgagtcggaagactcaggc
cttcgatcgcctggctcgcactcctacaacacctgtccccgcggctggggcagtagcctg
agggtgaagagaagcaccgtctccacagacctgtga
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