Clinocottus analis (woolly sculpin): 137791425
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Entry
137791425 CDS
T10471
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03013
Nucleocytoplasmic transport
cana03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137791425 (upf2)
03015 mRNA surveillance pathway
137791425 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137791425 (upf2)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137791425 (upf2)
mRNA cycle factors
P-body specific factors
137791425 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
137791425
NCBI-ProteinID:
XP_068442471
LinkDB
All DBs
Position
Unknown
AA seq
1339 aa
AA seq
DB search
MPAERKRSVNMDEKDVCTFANKEKEKDRDGDRRPPAARDKAKDEAKMSGKKDGGKEEKRK
RLEEEKKKKEEKERRKKEEEKQKAEEEQKKKEEEEKRLQEEEEKKLQEEEAKRQREEEAT
LLKEKEEGHQLHQEAWERNQCRKELRCKNQNAQEGRPEEAFFSRLDSSLKKNTAFVKKLR
TLTEQQRDSLSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKKHFEARKEEKSPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGADR
DTHTHVSVVISFCKHCGDDIAGLLPRKVKLAAEKFGLGFPPSEIITVEKQQPFQNLLREY
FTSLTKHLKKDHRELQNTERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADL
LDENMPELPQDKSVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLVDLKAFVP
AILFKDNEKSGAGKDKEDAGKDGKEAKDAAGATTEELELELEALDIADEPLELEGADEAE
SEELAKKLLDEQEQEEEEANTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKS
NRRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVAEDLCSMLKGDFRFHIRKKDQIN
IETKNKTVRFIGELAKFKMFTKNDTLHCLKMLLSDFTHHHIEMACTLLETCGRFLFRSPE
SHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLL
YKDLSKVTTEKVLRQMRKLPWQEPEVKSYLICCMVNIWNVKYNSIHCVANLLAGLVAYQE
DVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISF
GINQDGSPSALDPPEHLFRIRLVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKST
DVWTKDHPFPIDIDYMITDTLELLRPKMRPSCSLEEATKQVTDLEREVLVKLGLAMGRDG
RSSALSEEDDDADDDEEGGAETEEQSGNESEMNEQEEDEGSENEEEEREEEEEENTDYLT
DSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGETVKVHQLDV
AIPLQLKSQLKKGGGAREPCAGESDADASDTMQFVMLTRKGNKQQYKILNVPLSSHLAAN
HFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPAPANTNRERRPRYQHPKG
APNADLIFKTGGRARGETDRHTVRRAGRQEGRDRKERQAGEVRQEAEARQEAEARQEGGT
PQRPAADETLASRQRADHL
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgaacgcaagcgctcagtaaacatggacgagaaggacgtttgcaccttcgcc
aacaaggagaaggagaaggaccgcgatggggaccggaggccgccggccgcccgcgacaaa
gccaaggacgaggccaagatgagcgggaaaaaagacggcggcaaggaggagaagaggaag
cgcctggaggaggagaagaagaagaaggaggagaaggagcggaggaaaaaagaggaggag
aagcagaaggcggaggaggagcagaagaagaaggaggaagaggagaagagactgcaggag
gaggaggagaagaagctgcaggaggaggaggccaaaagacaacgcgaggaggaggcgacg
ctcctgaaggagaaggaggagggccaccagctgcaccaggaggcctgggagcgcaaccag
tgcaggaaggaactccgctgcaagaaccagaacgcgcaggagggccggcccgaggaggcc
ttcttcagccggctggactccagcctgaagaagaacacggccttcgtcaagaagctgcgc
acgctcaccgagcagcagcgcgactcgctctccaacgacttcggctcgctgaacctcagc
aagtacatcggcgaggccgtgagctccgtggtggaggccaagctgaagatctcggacgtg
ggctgcgccgtgcacctctgctcgctcttccaccagcgctacgccgagttcgccccgctg
ctgctgcaggcgtggaagaagcacttcgaggcccgcaaggaggagaagtcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgccgagctcaccatcgtcggcctcttcacc
gacaaggaggggctgtcgctgatctacgagcagctgaagaacatcatcggcgccgaccgc
gacacgcacacccacgtgtccgtggtcatcagcttctgcaagcactgcggcgacgacatc
gccggactgctgccgcgcaaggtgaagctggccgccgagaagttcggcctgggcttcccg
cccagcgagatcatcaccgtggagaagcagcagcccttccagaacctgctgcgcgagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacaccgagcgg
cagaacaggcgcatcctccactccaaaggcgagctgagcgaggaccgacacaagcagtac
gaggagttcgccacctcgtaccagaagctgctggccaacactcagtctctggccgacctg
ctggacgagaacatgcccgagctgccgcaggacaagtccgtgcaggaggagcacggcccc
ggcatcgacatcttcacgcccggcaagcccggcgagtacgacctggagggcggcatctgg
gaggacgaggacgcccgcaacttctacgagaacctggtggacctgaaggccttcgtgccc
gccatcctcttcaaggacaacgagaagagcggcgcgggcaaagacaaggaggacgccggc
aaagacggcaaggaggcgaaggacgcggccggcgccaccacggaggagctggagctggag
ctggaggcgctggacatcgcggacgagcctctggagctggagggagccgacgaggccgag
agcgaggagctggccaagaagctgctggacgagcaagagcaagaggaggaagaggccaac
accggctcccacctgaagctgatcgtggacgccttcatccagcagctgcccaactgcgtg
aacagagacctcatcgacaaggccgccatggacttctgcatgaacatgaacaccaagtcc
aaccgcaggaagctggtgcgcgcgctgttcaccgtgccgaggcagaggttggacctgctg
cccttctactcgcgcctggtggccacgcttcacccctgcatgtcggacgtggccgaggac
ctctgctccatgctgaagggggacttccgcttccatatccgtaagaaggaccagatcaac
atcgagaccaagaacaagacggtccggttcatcggggaactcgccaagttcaagatgttc
accaagaacgacacgctgcactgcctcaagatgctgctgtctgacttcacgcaccaccac
atcgagatggcctgcacgctgctggagacttgcggccgcttcctgttccgctcgccagag
tctcacctgcgcaccagcgtcctgctggagcaaatgatgcgtaagaagcaggcgcagcac
ctggacgcgcgctacgtgacgatggtggagaacgcctactactactgcaaccctccgccc
atggagaagacggtgcgcaagaagcggccgccgctgcaggagtacatccgcaagctgctg
tacaaggacctgtccaaggtcaccacggagaaggtgctgcggcagatgcgcaagctgccg
tggcaggagcccgaggtcaagagctacctcatctgctgcatggtcaacatctggaacgtc
aagtacaacagcatccactgcgtggccaacctgctggccggcctggtggcctaccaggag
gacgtgggcatccacgtggtggacggcgtgctggaggacatccggctgggcatggaggtc
aaccagcccaagttcaaccagcgccgcatcagcagcgctaagttcctgggcgagctctac
aactaccgcatggtggagtcggccgtgatcttccgcacgctcttctccttcatctccttc
ggcatcaaccaggacggcagcccgagcgctctggacccgcccgagcacctgttccgcatc
cggctggtgtgcacgctgctcgacacctgcggccagtactttgaccgcggctccagcaag
aggaagctggactgtttcctcatctacttccagcggtacatctggtggaagaagagcacg
gacgtctggaccaaggatcacccgttccccatcgacatcgactacatgatcacagacact
ctggagctgctgcggcccaagatgaggcccagctgctcgctggaggaggcaaccaagcag
gtcaccgacctggagagggaggtgctcgtcaagctgggtctggccatggggcgcgacggc
cgctccagcgctctgagcgaggaggacgacgacgccgacgacgacgaagagggcggcgcc
gagaccgaggagcagtcgggcaacgagagcgaaatgaacgagcaggaagaggacgaaggg
tcggagaacgaggaagaggagagggaggaagaggaggaggagaacacagactacctgacg
gactccaataaggaaaatgagaccgacgaggagaacaatgaggtgaccatccgcggcgga
gggctgaagcacgtggcgtgcgccgaggacgaggacttcattcaggctctggataagatg
atgctggagaacctgcagcagcgcagcggggagacggtgaaggtgcaccagctggacgtg
gccatcccgctgcagctgaagagccagctgaagaaagggggcggggccagagagccgtgc
gccggagagagcgacgcggacgcctctgacaccatgcagtttgtcatgctgacgcgcaaa
ggcaacaagcagcagtacaagatcctgaacgtgccgctgtcctcccacctggcggcaaac
cacttcaaccagcagcaggccgagcaggaggagcgcatgaggatgaagaagctcacgctg
gacatcaacgagcggcaggagcaggaggactaccaggagatgatgcagtccctcgcgcag
cgtccggctccggccaacaccaaccgggagcgccggcctcgctaccagcacccgaagggc
gctcccaacgccgacctcatcttcaagaccggaggaagagcgagaggcgagacagacagg
cacacagtcaggagggcaggcagacaggaggggcgggacaggaaggagagacaggcagga
gaggtgagacaggaagcagaggcgagacaggaagcagaagcgagacaggaaggagggacg
ccgcagcgccccgctgcagacgagacgctcgccagcagacagagggcagatcatctgtga
DBGET
integrated database retrieval system
