Clinocottus analis (woolly sculpin): 137791702
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Entry
137791702 CDS
T10471
Symbol
rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cana03016
]
137791702 (rtcb)
Enzymes [BR:
cana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137791702 (rtcb)
Transfer RNA biogenesis [BR:
cana03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137791702 (rtcb)
Prokaryotic type
tRNA splicing ligases
137791702 (rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
137791702
NCBI-ProteinID:
XP_068442932
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MARSYNDELQYLEKLSGNCWRIKKGFVPNMQVEGNFYVNDNLEKLIFEELRNACKGGGFG
GFLPALKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDEADVQPVKEQLAQALFDHIPVGVGSKGVIPMGARDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHRGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRITVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFVTTPDDLDMHVIYDVSHNIAKVEE
HMVDGKQKTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEKGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDRLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISRKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggcccgaagctacaacgatgagctgcagtacctggagaagctcagcggaaactgctgg
aggattaaaaagggcttcgtgcccaacatgcaggttgaaggaaacttctacgtgaacgat
aatctggagaagctgatatttgaggagctccgtaacgcctgtaaaggaggaggttttggc
ggcttccttcccgccttgaaacagatcgggaacgtggcggcgctgccggggatcgtacac
cgctccatcgggctgcctgacgtgcactccggctacggctttgccatcggcaacatggcc
gccttcgacatgagcgaccccgacgccgtggtgtctccagggggcgtcggcttcgacatc
aactgcggcgtgcggctgctgaggaccaacctggacgaggccgacgtgcagccggtgaag
gagcagctggcccaggcgctgtttgaccacatccctgtgggcgtcggctccaagggggtc
atccccatgggggccagggacctggaggaggccctggagatgggggtggactggtccctg
agggagggctacgcctgggccgaggacaaggagcactgtgaggagtacggccgcatgctg
caggccgaccccaacaaggtgtcctccaaggccaagaagagaggcctgccgcagctgggg
actctgggagcaggtaaccactacgctgagatccaggtggtggacgagatctacaacgac
tacgccgccaagaagatgggcatcgaccaccgaggccaggtgtgcgtgatgatccacagc
ggcagcagagggctgggacaccaggtggccacagacgctctggtcgccatggagaaggcc
atgaagcgggaccgcatcacggtgaatgaccggcagctggcgtgcgcccgcatcgcctca
cctgaggggcaggactacctgaaggggatggctgctgccgggaactacgcctgggtcaac
cgctcgtccatgaccttcctcacccgacaggccttttccaaagtgttcgtcacgacgccc
gacgacctggacatgcacgtcatctacgacgtttctcacaacatcgccaaggtggaggag
cacatggtggacgggaagcagaagacgctgctgctccaccgcaaaggctccacccgcgcc
ttcccgccgcaccacccgctcatccccgtggactaccagctcaccgggcagccggtgctg
atcggggggacgatgggaacctgcagctacgtgctcaccggcaccgagaagggcatgacg
gagacgttcggcaccacctgccacggagcgggccgcgctctgtccagagcgaagtcccgc
aggaacctggacttccaggacgtcctggaccggctggcggaccagggcatcgccatccgg
gtggcttcgcccaagctggtgatggaggaggctccggagtcgtacaagaacgtgacggac
gtggtgaacacgtgtcacgacgccggcatcagcaggaaggccatcaagctgcggcccatc
gccgtcatcaagggctga
DBGET
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