Clinocottus analis (woolly sculpin): 137792055
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Entry
137792055 CDS
T10471
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03020
RNA polymerase
cana03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
137792055 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
137792055 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137792055 (polr2a)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137792055 (polr2a)
Enzymes [BR:
cana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
137792055 (polr2a)
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
137792055 (polr2a)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
137792055 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
137792055
NCBI-ProteinID:
XP_068443559
LinkDB
All DBs
Position
Unknown
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDST
NPKIKDILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDISKEKGHG
GCGRYQPRIRRSGLELFAEWKHVNEDSQEKKILLNPERVHEIFKRISDEEDIILGLDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYRVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIIKPRPMWTGKQIFTLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVINNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVMTNALVQGSLEKEFDKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLKDLSTKLVI
VNGDDPLSRQAQQNATLLFNIHLRSTLCSRRMTEEFRLSTEAYDWLLGEIETKFNHSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNNGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacagaagggggaatcaag
taccccgaaacaacagaaggtgggcgccctaaactgggtggccttatggaccccagacaa
ggggtcatagaacgaaccggaagatgtcaaacatgtgcaggcaacatgacggaatgccct
gggcactttgggcacatagaactggcaaagccagttttccacgtcggcttcgtaacaaag
ataatgaaggttcttcgatgtgtttgtttcttttgctcgaagctattggtggattcgacc
aatccaaagatcaaagacatccttgtaaaatctaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatttgtgaaggaggagaggagatggacaac
aaatttggaatggaacagcaggagaccgaagaggacattagcaaagagaagggccacggg
ggctgtgggcgctaccagccacgcatcagacgctccggcttggagctgttcgctgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcctgctgaaccccgagcgcgtgcac
gagatcttcaagcgcatctcggatgaagaggacatcatcttgggtctggaccccaagttt
gcccgaccagaatggatgattgtaactgtgttgcctgtgcctccactggctgtcaggcct
gctgtagttatgcagggctccgctcgaaaccaggatgacttgacccacaagctggccgac
atcgtgaaaatcaacaaccaactgagaagaaacgagcagagtggcgctgcagcgcacgtc
atagctgaagatgtcaaactgctccagtttcatgtcgccaccatgatagacaatgaattg
ccaggcctaccaagggcaatgcaaaagtccggccgccctctaaaatccttaaaacagcgt
ctaaaggggaaggagggccgagtccgaggtaacctcatgggcaagcgtgtggacttctct
gcgcgaactgtcatcaccccagaccccaacctgcaaatcgaccaagtgggcgtgccacga
tccatagcggctaatatgaccttcccagaaatagtcacacccttcaatattgacagatta
caagagctggtgcgaagaggcaacagccagtacccgggagccaaatacatcattcgtgac
aatggagacaggattgacctgcgattccacccaaaaccaagtgaccttcacctgcagatc
ggctacagggtggaaagacacatgtgtgacggtgacatcatcatctttaacagacaacct
acactacataaaatgtccatgatggggcacagggtgcgcatcctgccgtggtccacgttt
cgactcaacctcagtgtcaccactccatacaatgccgactttgacggggatgagatgaac
ctccacctgcctcagtccctcgagacgagggcagagattcaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacaggcccgtcatgggtatcgtgcaggacaccctc
acagctgtccgcaagttcaccaaaagagatgtcttcttagagcggggggaagtgatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccggccatcatcaagccc
cgccctatgtggacaggcaagcagatcttcaccctaatcattcccggacacatcaacgtg
atccgcacacacagcacccatcctgacgaggaagacagcggcccttacaagcacatctca
cccggggacaccaaggtcgtagtggagaacggcgagttgattatgggaatcctgtgtaag
aaatctctgggaacctcagccggctccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtgatcaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacctaccttgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aacgagctggaaccgacccccggtaacacactgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacgggatcctcagcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggccggttccaagggatcaaagattaacatctca
caggttattgctgtggtggggcagcagaacgtggagggtaaacgaatcccctttggcttc
aaacaccgcacgctccctcacttcattaaggatgattacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgactcccacagagttcttcttccacgccatggga
ggcagagagggtcttatcgacacagccgtcaagactgctgagactggttacatccagcgg
cgtctgatcaagtctatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggttcagttgcgttacggtgaggacggcctggcgggggagaacgtcgag
tttcaaaacgtggcaacgctcaaaccctcgcacaaggcctttgaaaagaagtttaagttt
gattgcaccaatgagcgagcgctgaggcggatactgcaggaagacgttgtgaaagacgtg
atgaccaatgccctggtgcagggatccctggagaaggaatttgacaagatgaaggaggac
agagaggtcctccgagccattttccccactggagacagtaaggtggtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacattcggaccccgaca
gacctcaatcctctaagggtggtcgagggtcttaaggatctgagtacgaagctggtgatt
gtgaatggcgacgacccgctgagccgacaggcgcagcagaacgccaccctgctcttcaac
atccacctgcgctccacactctgctcccggcgcatgaccgaggagttccgcctctccacc
gaggcgtacgactggctgctgggagagattgagaccaaattcaaccattccatcgctcac
ccgggtgaaatggtcggcgctctggccgctcagtctctgggagagccggccacccagatg
accctgaacactttccactacgccggcgtgtcagccaagaacgtgacactcggtgtgcct
cgtctaaaggagttgatcaacatctccaagaggcccaaaacaccctcgctgaccgtattc
ctgctgggtcaggcggcccgcgacgctgagcgggccaaggacatcctctgtcgactggag
cacaccacactgcgaaaggtgacggccaacaccgccatctactacgaccccaacccccaa
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatttcaccctggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgaccatggagcagattgcagagaagatcaacgcaggtttcggagatgac
ctgaactgtattttcaatgacgacaacgccgagaagctcgttctgcgaatcagaatcatg
aacagcgatgagaataagttccaagaggatgaggaggtggtggacaaaatggatgatgac
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcattgag
cagatcagcaaggtgtacatgcacttgccccagacggacaataagaagaagatcatcatc
actgaggaaggtgagttcaaggccctgcaggagtggatcctcgagacggacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggccctggagagggagttg
aaccacgtcatctcctttgacggctcctacgtcaactaccgccacttggctctgctctgt
gacaccatgacgtgccgcggtcacctgatggccatcacgcgtcacggcatcaaccgacaa
gacaccggaccgctcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcc
tcgtcccacgctgagagcgaccccatgaagggggtgtcggagaacatcatgctcggccag
ctcgccccggccggcacaggatgcttcgacctgctgctggatgcggagaagtgtaaatac
ggcatggagatccccacgaacatccctggcatcagcgtggccggacccaccggaatgttc
tttggctcggtgccgagtcccatgagcggtatgtcgcctgccatgaccccgtggaacaac
ggagcaacaccggcctacggcgcctggtctcccagtgtcggaagcggcatgactcccgga
gcagccggtttctctcccagtgcggcgtcggacgcgagtggcttctctccgggctattca
ccggcctggtctcccactcctgggtccccgggctccccgggacctgccagcccgtacatc
ccgtctccaggtggagccatgtcacccaactactcccccacctcccctgcctatgagcct
cgctcccccggaggctacaccccacagagccccggctactccccaacgtctccctcctac
tcccccacctctccctcctactccccgaccagccccaactacagcccgacatctccctcc
tactcgcccacctcgcccagttactccccgacgtctccgtcctattcgcccacgtctccg
tcttactccccgacgtctccctcatactccccgacctccccgtcctactcccccacgtct
ccctcctactctcccacctcgccgagctacagcccgacgtcaccgagctacagcccgacg
tcgcccagctactcccccacctccccttcctactcccccacctcgccctcttattctccc
acctctccgtcttactcccccacctccccgtcctactcgcccacctctccctcctactcg
ccgaccagcccgagctacagcccgacatcgcccaactacacgcccacctcgcccagttac
tcccccacttctccctcctactcaccgacatctccctcttattcccccacctcccccaat
tacaccccgaccagccccaactactcccccacctctccgtcttactcccccacctctccg
tcctactccccctccagtccacgtttcaccccgcagtcgcccacctacacacccagctcc
ccctcctacagccccagctctccctcctactcccccacgtcccccaaatacaccccgacg
tcaccctcatacagccccagttccccggagtacacccccacctctcccaagtactccccg
acatcgccaaagtactccccgacatcaccgaagtactcgccgacttctcccacttactca
ccaacgactccgaaatacagccccacctctcctacctactcccccacctcgcccacatac
acccccaccagccccaagtactcccctacctcccctacttactccccgacttcccccaag
tactcacccacgtctcctacgtactcgcccactagtcctaaaggctccacgtacagcccc
acctcccccggatacagccccacctcccccacctacagcccggccatcagcccggacgac
agcgacgaggagaacaactga
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integrated database retrieval system
