Clinocottus analis (woolly sculpin): 137792105 Help Entry 137792105         CDS       T10471                                  Name (RefSeq) synaptopodin-2 isoform X1   KO K24066   synaptopodin-2 Organism cana  Clinocottus analis (woolly sculpin) Pathway cana04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cana00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     137792105  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04990 Domain-containing proteins not elsewhere classified [BR:cana04990]     137792105 Domain-containing proteins not elsewhere classified [BR:cana04990]  PDZ domain-containing proteins   Other PDZ domain-containing proteins    137792105 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  PDZ PDZ_6 Motif Other DBs NCBI-GeneID:  137792105 NCBI-ProteinID:  XP_068443668 LinkDB All DBs Position Unknown AA seq 1600 aa AA seqDB search MGAGDYICVTLRGGAPWGFSLREGEGDTYRPFFASQVEDGGRAFIAGVREGDEVVSLNGE PCADLTFSRAFALIDTSIDCLQLLVKRYCTIPPGESESEETYCGGRDSSCEALKSTTLHI FTPKHRSQSPRELYRSESQDESYYGELGSDTEFHKGPQLLYTQLHVPSSGEEHDFQENNG EGRQCFSPGSMVELQVSLSEQTLDLGCTSLGSAHGIDGVLSNKEAVDMTHSTTVSRYVPC SVREPLGQHGVVLSSPSMLGQVEVILQQAAAASAAGRGLLSVGGPRVSGSVGSQSEGEEG GGGHCEGDPGSFTVSFEIPSEEATPGEEQNSDSEEDPDKPNKHRAKHSRLRRSESLSEKH VKEVKSKCKRIALLLTAAPPNPNNKGVLMFKKHRQRAKKYTLVSYGTGEDEPEYSDEDDE ENEDEKQETHAVEFSFVAPDGSEIDKHFLTNARSSKGVLTINLDKGLLEIERNLKNQAEM ECLPETKGKGASMFAQRRLRMDEISAEHEELRSQGIPVEGVTMVEKKTEDHSYMQSTTEG HAYMDVNIHQQSQNQQQYQQYQEQQYYEQQQNYQKQQQQQQQQQNYQQQQQYQQQYQQQQ YEQQHYQQQMYQQQQKQQEYHREQQEMQHYSTNINGTVQHQTSEMQSTFSNRTAKPFSVE NMPATLYSPTMSGTNQDFVGQGEQIASRDERIATPASRTGLLSDSRRRNAGKPMFTFKEA PKVSPNPALLNLLNRKEKKLGFESGPEEDYLSLGAEACNFLQSQQMKHKTPPPVAPKPVI NPNSPPWSPQMEGTNQDMPQQAENSVSTPAVAPTTGTTPAPELEPTPPPAHEPSPPSAPQ ETPASNTTEEPHTWTPPEPESQQQPLEVTPQEGNTHANSTMQPEPAPAPIWAPAQTQAHQ PSTSPWHPAQVESHESPHSQSPQQPPWMTRQPSQTQAQPQLPTNTWTPQIQPSSWTQPQG QAQAQSQAQPCWTQPQEQPQSHPQVQPPWEHSHEQQNLQQPTWGQPQEPMQQQPQTPWTQ PSQTDGQHQPTWVQQPQQKSQPQPPWAQQVQPESQPQPPWVQPPQHQAPQQAWPGQPQPP WASAQPQQQQQPLVSAWPPSQTQAQVQPPWIQATQAQPPVQPQANLNPWSSVPAQALSPP SWAQQPSEHGQHPMNSWTKEQNQAQHQPPWAQPVAPQPTPQPNWQQSASKTPPQPPINTW PPPQTQPPAPINAWAPQSQQSPVNVSSSMVNNRPSPKPWHPPQNAPQNRTPPPPPQRMHS LTIGQRASSPINPMATVLNPSSHGPAFEMLAVRGKGADMFAKRQSRMEKFVVDSETVQAN NTTRSTSPVASLPTEWKYTPNVRAPPSRAFNPIQSPSYPPAATKQPPPSSPSTKAKKKGK EKQKPKPLNVLEVMKHQPYQLNSSLFTYGPAVEAAKPPEPQPDCSPSNPPVENQPIRYEQ IALAQPAGQFNAPYPQQAYGMPMQPIMHDGQYQQIPANVYPPPNPYQHPPGGPYQQVYNQ QTYQPTAPPAYHPQSPQSPNHPYPQAPQALYQSANSPPYLTPSSVPYQPQPPSGYVAPSF PVAARPESTAGGNTVAAPKPKFTAKKSSAQVWKPNSVDAE NT seq 4803 nt NT seq  +upstreamnt  +downstreamnt atgggcgccggggattacatctgcgttacgctgcgtggtggtgcaccctgggggttctcc ctgagggagggagagggggacacctacagacccttcttcgcctcccaggtcgaagacggc ggccgtgccttcattgctggagtgcgagaaggtgatgaggtggtgtcactcaacggagag ccgtgtgctgatctcactttttcacgagccttcgcactcatcgacacatcgatcgactgt ctgcagcttcttgtcaaaagatactgtaccatccccccgggagaatcagaatcagaagag acgtactgtggtgggagagactcctcctgcgaggctttaaagagcaccacccttcacatc tttaccccaaagcacaggtcccaaagcccaagggaactctacagatccgaatcccaggat gagtcttactatggggagttgggcagcgacacagagtttcacaaggggccgcagctgctt tacacccagctacatgttccctcttctggtgaggaacatgactttcaggaaaataatgga gaagggcggcagtgcttctcccctgggagcatggttgagctccaggtgtccctgtctgag caaaccttggatttgggctgcacctctcttggaagtgctcatgggatagacggagtactc tcaaacaaagaggctgttgacatgacccacagcaccaccgtgtcacgctatgtaccgtgt tccgtcagagagccactcggccagcatggggtggtgctcagctctccttcgatgctgggg caggtggaggtcattttgcagcaggcggcagcagcatcggcagcagggaggggcctcctg agtgtgggtggcccaagggtcagtggaagtgttggatcccaaagtgaaggagaagaagga ggaggagggcactgcgagggagatcctgggtctttcactgtctcatttgaaattccctca gaagaggcaacaccaggggaagagcaaaattctgactctgaggaggatccagacaaacca aacaagcatcgggcaaaacactccaggctcaggcgcagtgagagtctgtctgagaagcat gtgaaagaggtcaagtccaaatgtaaacgcattgctctccttcttacggctgctccgccc aaccccaacaacaagggggtgttgatgttcaagaaacatcgtcaaagggccaagaaatac acactggtgagctacggcacaggagaagacgaacccgagtacagcgacgaagacgacgag gaaaacgaagacgagaaacaagaaacccatgctgttgaattttcctttgtggctccagat ggttctgaaatagacaagcatttcctcactaatgcccgtagtagcaaaggtgtgctaact atcaatctggacaagggtctgctcgagatagaaaggaacctgaagaaccaagcagagatg gaatgtttgcctgaaaccaagggcaagggtgcctcaatgtttgcccaacggcgtctgagg atggatgagatttcagctgaacatgaggagctcaggagtcaggggattcccgtggaaggg gtgacgatggttgaaaaaaagacagaagatcactcctacatgcaatccacaacagagggc catgcttacatggatgtaaatatacaccaacaaagccaaaaccaacagcagtaccagcaa tatcaggaacagcagtactatgagcaacaacagaactaccaaaaacaacaacaacaacaa caacaacaacagaactaccaacaacaacaacaatatcaacaacagtatcagcagcaacag tatgaacaacagcattatcaacagcaaatgtatcagcagcagcagaagcagcaagaatat catcgagagcaacaggaaatgcagcactattctacaaacatcaatggcacggtccaacat caaaccagtgaaatgcagagtactttcagcaatcgtactgcaaagccattctcagtagaa aacatgccagctaccctttattctcctacaatgagtgggaccaatcaagattttgttggc caaggagagcagatagcttcccgtgatgagcgcattgccacccctgcaagccgaactggt cttttgtctgactcaaggagaagaaatgctggcaagcctatgttcacatttaaggaagcg ccaaaagtatcgcctaacccagcactgctaaacctcctcaacagaaaggagaagaagttg ggatttgaatccgggcctgaggaagactaccttagccttggggctgaggcttgtaatttt ttgcagtctcaacaaatgaaacacaagacacctccaccagtagctccaaagcctgtgatc aaccccaactctcctccttggtccccacagatggaaggaaccaaccaggacatgcctcaa caagctgaaaatagtgtatccacacctgctgtagcccccaccacagggactacccctgct ccagaactagagccaaccccaccacctgcccatgagccctctcctccttctgccccccag gagactcctgccagcaacaccacagaggaaccgcacacatggactcccccggagcctgaa tctcaacaacagcctctggaagtgacacctcaggagggaaatactcatgcaaattctacc atgcagcctgagcctgctcctgctcctatttgggctcctgcacaaacccaagcacaccag ccatcgaccagtccttggcatccagctcaagttgagtcccatgaatcacctcatagtcag tccccacaacagccaccttggatgacacgacaaccttctcaaacccaagcacagcctcaa cttcccacaaatacttggacccctcaaattcagccatcatcatggactcagcctcaaggg caagcacaggcccagtcccaagctcagccgtgctggacccagcctcaagagcaaccacag tctcatccacaggttcagccaccctgggaacactcacatgaacagcaaaatctgcagcaa ccaacttggggtcaacctcaagaaccaatgcagcagcagccccagaccccatggacacaa ccatcacaaacagatggtcagcatcagccaacttgggtgcaacaaccccagcaaaaatcc caaccacaacctccttgggctcaacaggttcagccagaatcccagccacagccgccatgg gttcagccaccacaacatcaggcaccacaacaagcatggccaggtcagccccaaccacca tgggcctcagctcagcctcaacagcaacagcaacctttagttagtgcatggcctccatca caaactcaagcccaagttcagccaccttggatccaagcaacccaagcacaacccccagtg cagcctcaagccaatctgaatccatggtcttcagtacctgcccaggctctgtcccctcca tcatgggcccagcagccttcagaacatgggcagcaccccatgaattcttggactaaagag caaaatcaggcccaacatcaaccaccttgggctcaaccagttgccccccagcccacacca cagccaaactggcaacaatccgcttcaaagactccaccacagccaccaataaatacatgg cctccacctcagacacaacctccagcaccaattaatgcttgggcaccacagtcgcagcaa tcgcctgtgaatgtttcctcgtcaatggtgaacaatcgtccgtctccaaaaccttggcat ccaccacaaaatgccccacaaaatcggacccctccgcctccaccacagcgaatgcactct ttaaccattggtcagcgagcttcatcacccatcaatccaatggccactgtcttaaaccca tcatcccatggtccagcttttgagatgctagccgtcagagggaaaggagctgatatgttc gccaagaggcagtctcgtatggagaaatttgttgtggactctgagactgtgcaagcaaac aacactacccggtcgacatcgccagttgcttccttaccgactgagtggaaatatacaccc aacgtacgtgctcctccttcaagggcatttaatcctattcagtctccttcttacccccca gcggcaacaaaacagccccctccaagtagcccttcaaccaaagccaagaaaaaaggcaaa gagaaacagaagcctaaacccctaaatgttttagaggttatgaagcaccaaccctatcaa cttaattcctcactctttacctatggcccagcagtagaggctgctaaaccacctgaacct cagccagactgttcaccttctaatccacctgttgaaaaccaaccaattagatacgagcaa atagcccttgcccagccagctggacaattcaatgctccatacccccagcaagcctatggg atgccaatgcagcccattatgcatgatggccaataccaacaaatcccagctaatgtttat cctccccccaatccttatcagcacccccctggtgggccataccagcaagtttataatcaa caaacgtatcagccaaccgccccacctgcttatcatccccaatctcctcagtctccaaat catccctacccacaggcaccgcaggccctttaccaatcagccaatagtcctccctacctg acaccttcctcagtaccttaccagccacagcctcccagtggctatgttgctcctagtttt cctgtagctgcaagacctgaatctacagcaggtggcaacactgtagctgctcctaaaccc aagttcacagctaaaaagagctcagctcaggtgtggaagcctaattcagttgatgcagag tga

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