Clinocottus analis (woolly sculpin): 137792389
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Entry
137792389 CDS
T10471
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04382
Cornified envelope formation
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04518
Integrin signaling
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137792389 (col4a6)
04518 Integrin signaling
137792389 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137792389 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137792389 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137792389 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137792389 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137792389 (col4a6)
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137792389 (col4a6)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137792389 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137792389
NCBI-ProteinID:
XP_068444154
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MKFLFCVIAVALAVRSAHGGTSDEPCAGRNCGEGCRCNPEKGSRGRPGPLGEVGQSGPEG
PLGGPGPTGPKGEKGHVGLKGPSGPKGDKGPMGVPGFQGTDGVPGHPGQDGGRGPPGLDG
CNGTRGEPGAPGFGTGGPGLPGFAGPYGPKGQKGEPRFISDNGITSYPGSQGSDGQPGIR
GPTGPSGFPGPRGPEGFSGPPGPPGPPGPMGSQSDGYVGEKGDKGEVGLPGPSGTPGDGA
LISEQTLTIYKGDKGVSGPKGVRGYPGTPGRPGPFGYPGDFGEKGIPGYPGARGPPGFNG
PPGAPGQQGFRGTPGFPGSSGYPGPKGDQGDPGSPGPPAYVRGGSTSVQGQQGDPGLSGL
PGPPGDPGFQGFPGPPGQPGVGGFGIGFSGSPGFPGTLGPKGEKGNQGTPGYGFEGGPGS
PGPPGPRGNPGPPGPTSTPGDPFAASPGQPGPPGARGEPGENGYRGGRGDPGDCNCRGGG
TSGFPGIPGAPGVNGNPGYAGRKGEPGDGGTPGFSGVQGPPGRAGSGGYPGRKGEKGTSF
YPSLGFGVKGELGATGPRGPAGETGTPGRDGLPGFPGSPGPPGDGGYGTVGEKGFPGFPG
GKGRPGGPGEPGPGYAGTPGFRGEPGDPGIPGLPGQPGFPGPKGENSCEGVNDAGQGTGQ
VLPCSIPGEGGDPGFPGVPGRPGLKGEPGYPGGTGRPGFDGPKGDRGDPGFGGQPGPQGF
PGPRGDSGLPGSPGQSFDGGRGKDGAPGRPGAKGQPGEVLGATPGSPGRNGSPGIPGAKG
LPGTPGSSGLPGGDGRFGVPGLKGERGVDGFPGISGLPGLPGEPTFGIPGRPGSPGGSGP
SGSPGFPGRKGERGDAGFPGPAGMKGTPGQPGTPGSGGPRGPPGPPGPGTIDGIPGIPGR
KGERGFAGLMGFPGLPGRPGSPGFPGVKGDPAGPGRDGLPGGPGFPGTKGERGYPGLPGL
PSPPFRQEFVERGEPGYPGSNGLPGFPGPRGDKGLPGLPGRQGLPGLPGYAEQSKGQPGQ
PGYPGQPGSPGYPGPKGESGIMGFPGTSGARGDDGAPGFPGNPGEFGRPGGKGIPGESYG
YPGGPGAKGQPGEPGFPGGRGNDGAPGDNGFPGTPGYSNVKGIRGEGGRPGIMGSPGFPG
PKGQPGYPGRRGEDGSPGLPAGPGGPGAKGLPGSPGLDGLNGLGGPKGLPGTPGGNAGGR
PGAPGIPGFKGERGVSYPGGPGYNGPKGERGDSGGPGRVGFPGLPGPPGPTVGSNVPGPV
GDPGLPGLDGEYGLQGPPGLPGPPGPGTADGDRGDPGLPGFPGSPGRKGEPGLPGSPGIP
GSSSFKGGRGDTGYSGGPGLKGYTGDPGYYGSKGAKGIQGRPGRAGSPGLTAFSEPPGPP
PYGETGFPGGAGGPGGPGDAGQPGIPGRGGPKGRPGPVGKLGRTGAPGFPGPVGDAGPPG
FPGATGEQGPTGAVGRPGTPGGVGRGHSIGYTLVKHSQNAQVPMCPQGMAKLWDGYSLLF
VEGQEKAHNQDLGQPGSCLPRFSTIPFLYCSPNEICYYASRNDKSYWLSTTAPIPMMPVA
EQQIQPYISRCAVCEAPSLAVAVHSQDMTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQS
LVSPGSCLEDFRATPFIECNGAKGSCHFFANEYSFWLTTVEPSQEFVYSPAQETLKGGQE
RSRVSRCQVCSKLL
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcctgttttgtgtgatagcagtcgccttggcggtgagatctgcgcacggaggt
acgtcagacgagccgtgtgccggcagaaactgcggcgaaggatgcaggtgcaacccagag
aaaggcagcaggggtcgccccgggcctctcggtgaggtcggtcagagcggaccagagggg
cccctcgggggcccgggccccacggggccgaagggagagaagggccacgtcggactgaaa
ggaccgtccggccccaaaggagacaaggggccgatgggagtgccggggttccagggaaca
gatggagtacctggtcacccgggtcaggacggaggtcgagggccgccggggctggacggc
tgcaacgggacccgaggggaacccggagcgcccggcttcgggaccggaggacccggactt
cctggatttgctgggccttacgggccgaagggccagaaaggagaacctcgattcatctca
gataacggtatcacgagttatcctggttcgcaaggatccgacggtcagcctggcatcaga
gggcccaccgggccgtcggggtttcctggtccgaggggtccggaggggttcagcggcccg
cccggcccccccggccccccagggcccatggggagccagagtgacggatacgtcggagag
aaaggagacaagggcgaagtgggtcttcccggacccagcggtactcccggcgacggggcg
ctaatcagcgaacaaactctcactatctacaaaggagataagggtgtgtccggcccgaag
ggcgtcagagggtaccccggcacgcccggcagacccggaccgttcggctatcccggtgac
tttggagagaagggcatccccggataccccggggcaagaggtcctcctggttttaacggc
cctcccggagctccaggacaacagggattcagaggtactcccggtttccccgggtcatca
ggatacccaggaccaaagggagaccagggcgaccccggatccccgggacctcccgcgtac
gttagaggtggaagcacctctgttcaaggacaacaaggtgacccgggtctcagtggcctt
cccgggccccccggtgacccgggattccaaggatttcccggacccccaggccagccggga
gttggcggttttggcatcggtttttccggatcccccggttttcccgggaccctcggcccg
aagggagagaaaggtaaccaaggcacgccgggctacggcttcgaaggaggccccggcagc
cccggacccccaggaccccgcggcaaccccggacctccgggccccacgagtactcctggg
gatccctttgctgcttcccctggacagcctgggcctcctggcgccagaggagagccgggt
gaaaacggataccgtggcggcagaggtgaccccggcgactgtaactgtcggggcggcggc
acctcggggttccccgggatccccggcgccccgggggtcaacggtaaccccggttacgcc
ggacggaagggcgagccgggcgacggcggcacgccgggcttcagcggcgttcagggccct
cccggccgtgccgggagcggcggctacccggggcgcaaaggagagaagggcacctccttc
taccccagcctgggcttcggggtgaaaggggagctcggcgccaccggacccagaggcccg
gcgggagagactggaacgcccggaagagacgggctgcccggattccccgggtctcctgga
cctcccggcgacggcggctacggcacagtgggagagaaagggttccccgggttccccggg
ggcaagggccggcccggcggccccggagaacccggccccggatacgccgggacgcccggc
tttcgcggagaaccaggagaccccgggattcctggactaccggggcaaccgggtttcccc
ggaccgaaaggtgaaaacagctgtgaaggggttaatgacgccggacagggaacgggccaa
gtgttaccgtgctccatacccggcgagggaggagaccccggtttccccggagtacccgga
cgcccaggccttaaaggggagcccggctacccggggggcactggacgtcccgggtttgac
ggtcccaaaggagacagaggagaccccggctttggaggtcaacctggaccacaaggcttc
cccgggcccagaggggattctggacttccagggagcccgggacagagttttgacggcggc
agggggaaggacggcgctccgggtcgccccggagccaaaggtcagcccggagaggtgctg
ggagcgacgcccgggagccccggacggaacggctcaccgggaatccctggagcgaagggc
ctgcccggaacgccaggaagctctggattacctggcggtgacgggcgcttcggcgttccc
gggctgaagggcgagcgtggcgttgacgggtttcccggtatctccggccttcccggcctt
cccggcgagccgaccttcggcattcccggtcggcccggatctcccggcggcagcggaccg
agtggatcaccaggttttcccggccggaagggagaaagaggagacgctggtttcccaggg
ccggctggaatgaagggaaccccgggacaacccggcacccctggatcaggagggccgagg
ggaccccccggacctccgggaccaggaaccatagatggaatcccaggaatcccaggaagg
aagggcgagagaggtttcgcaggactgatgggtttccctggactgccagggcgtcccggt
agtccagggtttcctggagtgaaaggcgaccccgccggtcctggaagagacggactcccc
ggcggcccgggattccctggaacgaaaggtgagagaggataccccggtctccccggcttg
ccctctcctccatttagacaagagtttgtggagagaggagaacccggataccccggtagc
aacggtctccctggcttccccggaccccgaggtgacaagggtctgccaggtttgcctggt
cgacagggtctgcctggacttcctggttacgccgagcagagtaaaggacagccgggacaa
cccgggtaccccggccaaccgggatctccaggttaccccgggccgaagggagaatctgga
atcatgggattccccggcacgtcaggagcacggggtgatgacggcgcacctggattccct
ggaaaccccggagaatttggtcgtcccggtggaaaaggtattcccggtgaaagttatggg
taccccgggggtccaggagctaagggacagccaggagagccaggcttcccaggtggccgc
ggcaatgacggcgcccccggtgacaacggctttcctggaactccaggttactctaatgtg
aagggtattcgcggtgaaggaggacggcccggaataatggggtcccctggtttccctggg
cccaaaggccaacccggctacccgggaagaagaggcgaagacgggtctcccggtctgcct
gcaggtcccggaggtcccggagccaaaggtttgcccggatcccccggtttggacggactc
aatggcctcggtggacctaaaggcctaccgggaaccccaggtgggaacgcaggcggtcgc
ccaggtgcgcccggcattccaggttttaagggcgagagaggcgtctcctacccgggaggc
ccaggctacaacggaccgaagggagagagaggagactcagggggtcctggacgcgttggg
ttccccggtctgcccggacctcccggtcccactgtgggctcaaatgttcccggacctgtg
ggagaccccggtctccctggactggatggagagtatggtctccagggtcccccaggtctt
cccggccctcctggtcctggcactgccgatggagaccgaggagaccccgggctaccgggc
ttccccggctcccccggcaggaaaggagagcctggactccccggtagtccaggaatcccc
ggcagctccagcttcaaaggaggacgaggtgacaccggctacagcggaggtcctggtctc
aagggttacaccggtgaccctggttactatggaagcaagggagccaagggaatacaaggc
cgcccgggtcgtgccggtagcccaggactcacagcgtttagcgagccccccggcccgccg
ccctacggagagacgggtttccccggtggagctggcggccccggtggccccggagacgct
ggtcagcctggaatacccggacgtggaggtcctaagggtcgtcccggtccggtgggtaaa
cttggccgcaccggcgctcctggtttccccggacccgtcggcgatgccggaccccccggg
ttccccggagccaccggagagcaaggtcccaccggtgcagtcggacgtcccggcactccc
ggcggcgtcggccgcggtcacagcatcggctacacgctggtgaagcacagccagaacgcc
caggtgcccatgtgtcctcagggcatggccaagctgtgggacggctacagcctgctgttc
gtggagggacaggagaaggcccacaaccaggacctcggtcagcccggctcgtgcctcccc
aggttcagcaccatccccttcctctactgctcgcccaacgagatctgctactacgctagc
cgcaacgacaaatcctactggctctccacgaccgcgcccattcccatgatgccggtggcc
gagcagcagattcagccttacatcagcaggtgtgctgtgtgcgaggctccgtctctagcg
gtggcggtccacagtcaggacatgaccatccccacctgtcccgccggctggaggagtctc
tggatcggatactccttcctcatgcacacggcggccggcgccgagggcggcggccagtcc
ctggtgtctcccggctcctgcctggaggacttccgcgcgacgccgttcatcgagtgcaac
ggggcgaagggcagctgccacttcttcgccaatgagtacagcttctggctcaccaccgtg
gagcccagccaggagttcgtctactcgccggcgcaggagaccctgaagggaggccaggag
cgctccagagtcagccgctgccaagtctgcagcaagctgttgtag
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integrated database retrieval system
