Clinocottus analis (woolly sculpin): 137792808
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Entry
137792808 CDS
T10471
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03440
Homologous recombination
cana03460
Fanconi anemia pathway
Brite
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
137792808 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
137792808 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137792808
NCBI-ProteinID:
XP_068444643
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Position
Unknown
AA seq
1407 aa
AA seq
DB search
MDPSMVPLSCEHNGGQSGDSMQCEEQLRTTLHCDDKEKLRRKLALLQREYLRTAERLQRA
ERLDAVRSRISRQDRDRRDPEVTSKPEVRPSLLIPNTIGGTSPSVPQCQEAPADSDAFRR
SQVIRLLLPSNAASPQTLDPSHDQARSPRPSPALRLRSRRSRLRWERRSAEAGSSTADNS
EERREQSEGMETSGTEGSEDRVKTEERKLVNESEELFSCDDSESPSLLLAHGNTSGQNET
GDDNGNEKRGPQELEEKNAELTCSNAAIHTGEREQKGAKNVTGTETEGEEEDGNSRKQRD
GRPYEDSSNKDTEKNTEEQMESEKSHIDTAEIKEEKSELVGGARDVKGVSLLDSCTIVEG
LLYPPEYYVRTTRRMTLSQSQPDMQAVTLSQLSMGHRRRSRGRGSNRLTHGRERPDGDTP
TGLSSPTSASAGPLMESRSADASAEPNSRSSSEISACQIVTEGCSSPAVAAARPARGRRK
RRGRGRGRPQTPRCPLSLDTPGQVGLGRTSGDSQSTSSSVSSASPSLHEADGPKLCVTPG
EAVPVLDDAEPASTATQPSSGGNAAQQSSASGQLKPVFSIFLKRTNGCRQTRSAANWQSL
LLPSPPPAPAPLLPLPSLFPGPLLNHLVNCDITQDFHLPDDQFASLKLRKLRQVAVDSGV
EHFTPPSYNTRGCNRRYDTRRRRSGPVMPLSLTPTISNSPNPTEAKQAAARSEDLQNVSI
EYKLVDKLARQRSTEETPQLDITEIPREQQIENLYPACQTRTPSTESASAVQDCAADCVD
QYEERDTVSVDHPVKPPLQFDSANRPAGKESNHELQIKEPPVLSSEERTDCPVLVHALED
QTSRNYRTEDTSIVRTLSFDCLRQKSPEEPPNSCTAARLCNGSGAPGESPEQRLRVKSPA
EDSKDNSEPAASPPTDGSVANHAHVRHRVPSQLLQSPPLASAPYPLVAPNLPSSALLSSP
TLPSLGLSPHPLRAALPPSSSPAAPALALSPAARASSPPELSPRPPSAPSRPAASPAAQI
KAPSEPPCTDDRSRRVEPPSCPTRSSVRAQGSGGPVETAEEHMMRCTHTLKAPAGGCLVD
ACCLRGSSGALCVAAAGAWAVCLWSQTSAADWTLTHTWAFDKPVINVFPVPNAAGLMCVT
LGQLEIREVRMLSCSSLSQALLCEGVVQAVVGVSRSRVVTSSHSASGSTLRVFTPSDSGR
TSSSQPLVSPGVCVGALAPVDALLDALIGSSECGHLFVWNLKTGQLLRRIILRDGLSHTA
CLRGFSSCGALFVLLQHQLLSSPEDKATEEEEDTKKAALFSLVAVNPVSGKTALASRLHA
PKAWSGRLCEADVSSSSVVGLSQSGCVCVWDLGRRGTSRTAVRAPDGEGWQLARWGEGGT
LLTGHHNGDVTLHCRSPGRTSLCGWTQ
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atggacccgtcgatggtgccactgtcgtgtgagcacaatggaggacaaagtggagactca
atgcaatgcgaggagcagctcaggaccacattgcactgtgatgacaaggaaaagcttcgt
aggaagttggctctgttacagagggagtacctcaggacagctgagagactacagcgcgct
gagcgtctggacgcagtgaggagcaggatcagtcggcaggaccgagaccggagagaccca
gaggtgacatccaaacccgaagtcaggccatcactgttgataccgaacaccatcggtggg
acatccccgagcgtccctcagtgccaggaagctccagcagattctgatgccttcaggagg
agccaggtgatccggttgctgctcccctcgaatgctgctagcccacagaccctagatccc
agccatgaccaggctagaagtcccagacccagtcctgccctgcgcctcaggtcccgacgc
agccgcctacgctgggaaaggaggagcgctgaggctggcagcagcacggctgacaacagc
gaggaaagacgtgagcagagtgaagggatggagactagtggaacggaaggaagtgaagac
agagtcaaaacagaggaaagaaagcttgtgaatgagagcgaagagctgttttcatgtgac
gactctgagtctccatctctgctgcttgcacacgggaacacttctggacaaaatgaaaca
ggagatgacaatggaaacgagaaacggggaccacaagaactagaggaaaagaacgctgag
ctcacatgttcgaacgctgctatacacacgggagaaagggaacaaaaaggcgccaaaaat
gtaaccggaacggagacagagggagaagaggaagatggaaatagtagaaagcaaagggat
ggaaggccgtatgaagacagcagtaataaagatacggaaaaaaatacagaggagcaaatg
gaaagtgaaaaaagtcacattgatacagctgaaataaaagaagagaaaagtgagctggtt
ggaggagcgcgtgatgtaaagggtgtcagtctgctggactcctgcaccatagtagaagga
ctactttacccaccagagtactacgtccggaccacaaggcggatgacattgtcgcagagc
cagcctgacatgcaggccgtcacactctcccagctgagcatgggacatcgtcgcaggagc
cgcggcagaggctcgaacaggctcacgcacggccgcgaacgtccagacggagacacgccg
acaggattgtcctcaccgacgtctgcatcagcgggccctcttatggaatcgcggtctgcc
gacgcatctgccgagccgaacagccggagctccagtgagatctcggcttgtcaaatcgtc
acggagggttgttcttcgcctgcggtcgccgccgctcgcccggcaagagggaggaggaag
agaagaggtcggggcagagggagacctcaaaccccacgatgccctcttagtctagacaca
cctggacaagtaggccttggacgaacctcaggagattcccagtccaccagctcctcagtc
tcttccgcctcgccctctctccatgaagccgatggaccaaagctctgcgtcactccaggg
gaagccgttccagtgctggacgacgctgagcccgcgtccacagcaacacagccttcctct
ggtggtaatgccgctcagcagagctctgcctctggacagctaaagccggtcttttccatc
tttctgaagaggactaacggatgcagacagacaagaagtgcagcgaactggcaatctctc
ctcttgccctcccctccacccgccccggcgcctctgcttcctctcccgtctctgttcccc
ggcccgctgctcaaccacctggtgaactgtgacatcacgcaggatttccacctccccgac
gaccagtttgcctctctgaagctgcgcaagctccgccaagtcgctgtcgattcgggagtc
gaacattttacaccgccgtcctataacacacgcgggtgcaaccggcgctacgacactcgc
cgccgccgcagtggcccagtgatgccgctttcactcacgcccacaatctcaaattcgccc
aatcccactgaagcgaagcaagctgctgcacggtccgaggaccttcaaaacgtgtcaata
gaatacaagcttgtggataaattggcacgtcagcgttcgactgaggagacgcctcaacta
gatattacggaaatccctcgagagcagcagattgaaaacctctacccagcgtgtcagact
cgcaccccctcgacagaatcggcgtcagcggttcaagattgtgccgcagattgtgtcgat
caatatgaagaacgagatactgtgagtgtggaccaccccgtcaaaccaccgcttcagttc
gactctgcaaacaggcctgccggcaaagagagcaatcatgaacttcaaataaaagagcct
cctgtcttgtcatcagaagaacgaacagattgtcccgttttagtccacgctttggaagat
cagacgtctagaaactacagaacagaggacacatccatcgtcaggactctttcctttgat
tgccttcgacagaaaagccccgaggagcctccgaacagctgcaccgccgcacggttatgt
aacggcagcggcgctccgggggagtctcctgagcagcgtctgcgtgtgaaatctcctgct
gaagattcaaaggacaactccgaacccgccgcgagtcctcccacggacggatctgtggca
aatcacgcacacgtgcgccacagggtcccgtctcagctcctgcagagtcctcctctggcc
tcggctccctaccccttagtggccccaaacctgccctcctctgcgctcctgtccagcccc
acgctgccgtcactaggactcagcccgcaccctctccgtgccgccctgcctccgagctcc
tcgcccgccgccccggctctcgctctgagcccggccgcccgggcctcctcccctcccgag
ctctctccgcgtccgccaagcgctcctagccggccggccgcctcccccgccgctcagata
aaggctccgtctgagccgccgtgtacagacgatcgttcccgcagggtcgaacctccgagc
tgcccgacgcgttccagcgtccgggcccagggatcaggtgggccggtggagacagcggag
gaacacatgatgagatgcacacacacgctgaaggccccggcaggaggctgtctggtggat
gcgtgctgcctgcgcggatcctcaggcgctttgtgtgtagcagcagccggagcgtgggcc
gtgtgtctctggagtcagacgtcagctgccgattggacactaacacacacctgggccttc
gataagccggtcatcaatgtgtttcctgtcccgaatgctgcggggctgatgtgtgtgact
ctaggtcagttggaaatcagagaagtgaggatgctgtcgtgctccagcctctcgcaagcg
ctgctctgcgaaggcgtcgtccaggccgtcgtgggcgtgtccagatccagagtggtcacc
tcgtcccactcggcatccggttccaccctgcgggtgtttacgccgtcagacagtggccgc
acatcgagctctcagcctctcgtgtctcccggcgtttgtgtcggggctctcgctccagtg
gacgcacttttagatgctctgattggctcaagtgaatgcggacacctcttcgtctggaac
ttaaagacgggacagctgctgcggagaatcatcctcagagacggtttatcccacacggcc
tgtctcaggggattctcctcctgtggagcgttattcgtcctgctgcagcaccagttgctc
agctccccggaagacaaagcaacggaggaggaggaggacacaaagaaggccgccctgttc
tcgctggtcgccgttaaccccgtgagcgggaaaaccgccctggcttctcggctgcatgcg
cccaaagcctggtccggcaggctgtgcgaggccgacgtcagcagctccagcgtggtgggc
ctgagtcagagcggctgcgtgtgcgtgtgggacctcgggcgccgcggcacctcgaggacg
gccgtgcgggctcccgacggcgaaggatggcagctcgcccgatggggggaaggaggcacg
ctgctgaccggccatcacaacggagacgttactttacactgtcgcagtccgggtcggacg
tcactctgcggctggactcagtga
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