Clinocottus analis (woolly sculpin): 137793342
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Entry
137793342 CDS
T10471
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
cana Clinocottus analis (woolly sculpin)
Brite
Ribosome biogenesis [BR:
cana03009
]
Eukaryotic type
90S particles
Other 90S particles
137793342 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
137793342
NCBI-ProteinID:
XP_068445533
LinkDB
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Position
Unknown
AA seq
1859 aa
AA seq
DB search
MASVEEDFPRGGTAKKATDSKIVVQRTEVDNLFQSNEQAETKKRKGAGKDADKKLKKPKT
DKRDGLTLNAAAKCVEILHLKNLKEGILMLGCVKEVTDFEVTVSLPCGLQGYLRIMNICD
SYTKLLSEQLDSADTEEICSLEHLFFPGMVFRCVIAKLDTAKGGSISIQLSTNPKLINKA
LTSSSLQAGMVLSGCVESVEDHGYIVDIGLSGTKAFLPKKAGEDQHNNTEELKVGQYLTS
QLEEVKNDGRLVRLSVIPPTVVQACAKSEQGWNLTNLQPGLLVKATIKKVTKHGLLLDFL
SSFSGQVDILHMEPEQTSNYTEGTEVRACVLYVEPSTRLVGLSLRSYLFQPGARLDHIPA
GGDRIGEVVKDCKMISMHHMSGAIVELPDTTRAFVHRNHLKESNAPANENRVLAQSEHTI
RILDFSAMDQIHFVSLRKSIIEKRFYRYHDLQAGQVVEGTVSVLLSHGMIVHLSDHIKGL
VPQTHLSDIILKNPEKKYVEGMKIKCRVLSVEPEKKKLYLSRKKALVDSTLPLFLSFSDA
RPGRVSHGYIVSIKDFGCIVRFYNNVRGLVPLHQLSSEPVVSPEEVFYVGQVLKAKVLHC
DPDKSKMILSFKAAMEGDTEEAALPALDCEVGKRLEAKVLKKLETGLEVAILPDEIRAVL
PTIHLSDHLSNCTLLWESIQEGDNILNIICYGKNKQNISITKKPTVRWSLEEGVVAKDFS
EVTVGMQLIGWIKNIMSYGVFVEFPYGLVGLAPKSAMADRFIIDTTTAFKLGQTVIAKVT
NLDVEKQRFLVTLKISEVISPECDAQTRLINGLQERKVVTEMLAMRENRDLCQQLAALTV
GQKLKLTVDTVTDGCGATFKSDDLAGVTIMATRHHVMGVNLTSGQKVTVVILYVDLLSTC
IHVSILPKLMVKKKSLAEGSKYTAIVQHISEDFAVLSLGDTAQLTVIQTSSHMNEPFRSE
LEKLKAGMILAVEVIEPSCQQLQELPLVSWKRCAPKQHTPFENETSVKGHHFGEIVQGIV
RTVKPASIQVTLKDGSTGSVHVSEVLEPADVRIGAFPTSTVLVGSSVTARVIGGRDASSH
RFLPFSHPRFTYTVPELTLIPSKVDLSYDLKAVAGKDKLNNYTVGEEITCFVSKFNPKRK
ILEVTTGPCVNGTVDLLAMITDPKDAKHPEKLYKLGQAVKAKVLEMKSKPHRFILSLTGV
HTLVKGSVALGMVTNIHPQIGLLVNLPFGNVGTVAVTDLIDAYKPNPLAAYSKDQLLRCF
LLGVENRKWQLSLRPSRLSPEQAKPSKDPEVLSIDNLQEGQLIRGYIQSVSEHGVFIKLS
RSITGRAQLQHSTKYFVNSHTVLAEHLTLNTLLTTKIHTIDREMELVHLSLLPADTGKAD
VLPESLGLPLRLTGEAKKKYDLKKKKRTASESEQKPAESQVPNKKKKKAKTDDNDSGVEV
NFREDKKKKYDLKKKKRTASESEQKPADSQVPKKKKKKAKTDDSKVGVYFREEEDKKDEK
PKTDSVKKVTRRSRSPSRLQVAAGFSWDVHLSSLKPASAAQEGDSSDGEDQDGSSKPQRK
SRHELQQEKKAAEKALVQRETELMDPSLRPQDAAAFERLLLASPNSSLLWLQYMANHLQA
TQIEQARAVAERALKTISFREEQEKLNVWVALLNLENMYGTEESLKKVFERALQFCEPMP
VYQQLADIYAKSDKTKEADDLYKTMVKRFRQNKAVWLSYGTFLLQQGQSDSASVLLQRAL
TSLPSKESVDVIAKFAQLEFRYGDSEKGRTMFDKVLTSYPKRTDLWSVFIDLMVKRGAQK
EVRELFDRVIHLSVSVKKIKFFFKRYLEYEKKHGTPQSIQSVKEKAMEFVEAKGTEAAN
NT seq
5580 nt
NT seq
+upstream
nt +downstream
nt
atggcatcggtggaagaagacttccctcgaggagggaccgcaaagaaagccaccgatagt
aaaatagtggtgcagcggacagaagtggacaacttattccagtcaaatgaacaagccgaa
actaagaaaagaaaaggggcaggcaaagatgccgacaagaagctcaagaagccaaagaca
gacaaaagagatggtctgacgctgaatgcggcagccaagtgtgtggaaattctacacctc
aagaatttgaaggaaggtatcctgatgctgggctgtgtaaaggaggtaacagactttgag
gtgacagtcagtttgccctgtggcttgcaaggctacctccgcatcatgaacatctgtgac
tcctacaccaagctgctcagtgagcaactggattcagctgatacagaggagatctgctct
ctggagcatcttttcttccctggcatggtgttcaggtgtgtgattgccaagttggatacg
gccaaaggaggctccattagcatccagctgtcaaccaatccaaagctgatcaacaaggct
ctcacctcgagctctcttcaagctggcatggtcttaagtggatgtgtggagagtgtggaa
gatcatggctacatagttgacattggcctcagtggaaccaaagccttcttgcccaagaaa
gcaggtgaagaccaacacaacaacacagaagagctgaaagtgggtcagtatttgacttct
caattggaagaagtaaagaacgatgggcgtctggttcgcctttctgtcatcccgccgacc
gtagtccaggcctgtgccaaatccgagcagggctggaacctcaccaacctgcagcctggc
cttctggtcaaagctacgatcaaaaaggtgactaaacatggtctgctcctggacttcctg
tcctccttcagtggccaggtggacattctccacatggagccagagcagacgtccaactac
accgagggaactgaggtgcgagcctgtgtgctgtatgtggagccgtccacccgtctggtg
ggcctgagcctgcgcagctacctctttcagcccggggctagacttgaccacattcctgct
ggaggtgaccgcattggggaggtggtgaaggactgcaagatgatctctatgcaccacatg
tctggagccatagtggaactgccggacacaacaagggcctttgtacatagaaaccacctg
aaggagtctaatgcgccagctaatgaaaacagagtgctggctcagtctgagcacaccatc
aggatactggacttcagcgccatggaccaaattcattttgttagtctgcggaagagtatc
attgagaagcgtttttatagatatcatgatcttcaggccggtcaggttgtagaggggaca
gtgtcagtcctgcttagtcacggcatgatcgtgcatctgtccgaccacattaaaggcctg
gtgccccagacacacctgtctgacatcatcctcaagaacccagagaagaagtacgtggag
ggcatgaagatcaaatgtcgggtgctgtcagtagagccagagaaaaagaagctgtacctg
agcagaaagaaggctctggtagacagcaccctgccattgttccttagctttagcgatgcc
cgtcctggccgcgtgtcccacggctacattgtctccatcaaagactttggctgcattgtt
cgtttctacaacaatgtcaggggtttggtgccgctccaccagctcagctctgagccagtc
gtcagtccggaggaggtcttctatgtggggcaggtgttgaaggctaaagttcttcattgt
gaccccgataagtcgaagatgattctgtcatttaaggcagcgatggagggagacacggag
gaagctgctttgcccgcgttggactgtgaggtgggaaagaggctggaggctaaagtgctg
aaaaagttagagaccggtctggaagtggccatcctccctgatgagatccgtgctgtacta
cccacaatacacctttctgatcacctgtccaactgcactttgctgtgggagagtattcag
gagggagacaacatcttaaacatcatctgctacggcaagaacaaacagaatatttccatt
accaagaaaccaacggtgagatggtcactggaggaaggagtggttgcgaaggacttctct
gaagtcacagttggaatgcagctgatcggctggatcaagaacatcatgtcttatggcgtc
tttgtagagtttccatatggccttgttggtcttgcacccaagtctgccatggcagacagg
ttcatcatcgatacaacaactgccttcaagctgggccagacggtgatcgctaaagtgacc
aacctggatgtagaaaaacagcgtttcttggtcacgctgaagatttcagaggtcatatct
ccagagtgtgatgcccagaccagactcattaatggtctgcaagagagaaaagttgtgacc
gaaatgttagctatgagagagaaccgtgatctttgccagcagctggctgctctgacggtt
ggtcagaagctgaagttgactgtagatactgtgacggacggttgcggtgccaccttcaag
tctgacgatttggccggtgttaccataatggccaccaggcaccatgtcatgggcgttaat
ttgacctctggtcagaaagttactgtggtcatcctctatgttgacttgctgtcaacctgc
atccatgtgtccatcctacccaaactgatggtcaagaagaaatctttggctgaaggatca
aagtacacagcgatagtgcagcacatcagcgaagactttgccgtcctctcactgggtgac
acggcacagctaactgtcatccaaactagcagccacatgaacgagccatttcggtcggag
ttagagaagctgaaggcggggatgattttggccgtcgaggtcatagaacccagctgccag
caactgcaggagctccccctcgtgtcgtggaagcgctgtgcaccaaaacaacacacaccc
ttcgaaaacgagacgagcgtgaagggtcaccactttggggaaatcgtgcagggtatagtg
cggacagtgaagcccgcctccattcaggtcacactcaaagatggaagtacggggtccgtg
catgtttctgaggtgctggagcctgcagatgtgcgtattggggccttccccacatccacg
gttctggtgggcagctcggtcaccgccagggtcatcggagggcgcgacgcctccagtcac
agattcttgcccttctcccaccccagatttacatacaccgtccctgagctcacacttata
cccagtaaagtggatctgagttatgatttgaaagcagtcgcaggaaaagacaaactaaac
aactatacggtcggggaagaaattacatgctttgtatcaaagtttaatccaaagaggaag
attttggaggtcaccacgggtccttgtgttaatgggacggttgacctgctggccatgatc
acggatccaaaagatgcaaagcacccggagaaattgtacaagcttggccaagcagtcaaa
gccaaagtgcttgaaatgaagtccaaacctcaccgtttcattctttcacttacaggtgtc
catacgctggtgaaaggcagtgtagctttggggatggtgactaatattcatccccaaatt
ggcctcctggtcaatcttccctttgggaatgtgggaacagttgctgtcacagacctgatt
gatgcctacaagccaaacccgttggccgcgtacagcaaggatcaactgttgagatgtttc
cttcttggggttgaaaatcgcaagtggcagttgtctctccgcccatcaaggctgagccca
gagcaggccaagccatcgaaggacccagaagttttgtcgatagacaacctgcaggaaggc
cagttaatcagaggctacatacaatctgtgtcagagcacggggtcttcatcaagttgtcg
aggagcatcacgggaagagcccaactccagcattccaccaagtactttgtcaacagccac
acggtcctcgctgagcacctgactctcaacacccttctcacgaccaagatccacactatt
gacagagagatggagttggtccacctctcgctgctcccagcagacaccgggaaggcagac
gtccttccagagtctctcggtctgccgctgcgtttgaccggagaggcgaagaagaaatat
gacttaaagaagaagaaacgcacggcgtctgagagtgagcagaaaccagcagagtcccaa
gtcccaaacaagaagaagaagaaagcaaagaccgatgacaatgacagcggagtggaagtg
aacttcagagaagacaagaagaagaaatatgacttgaaaaagaagaaacgtacggcgtct
gagagtgagcagaaaccagcagattcccaggtcccaaagaagaagaagaagaaagcaaag
accgatgacagtaaagtgggagtgtacttcagagaagaggaggataagaaggatgaaaaa
cccaaaactgattctgtgaaaaaggtgacacgcagatcaaggagtccatccagactgcag
gtggcagcaggtttctcctgggatgtgcatctgagctccctgaagcctgcctctgccgca
caggagggcgactccagcgatggagaggaccaagatggaagcagcaaaccccagagaaag
tctcgtcatgagcttcagcaagagaaaaaggcagcagagaaggccctggtacagcgggag
actgagctgatggatccgagcctgcggcctcaagatgcagccgccttcgagcgcctgctc
ctcgcttcacccaacagctcactgctctggctccagtacatggctaaccatctacaggcc
acccaaatcgagcaggcccgcgctgtggcagagcgggccctaaaaactatctcctttagg
gaggagcaggagaagctgaacgtgtgggttgccctgcttaaccttgagaacatgtacggc
acagaggagagcctgaagaaagtgtttgagcgagcgctgcagttctgcgagcccatgcca
gtttaccagcagctggctgacatctacgcaaagtccgacaagacaaaagaggcagatgac
ctgtacaagacgatggtgaagcgtttccgtcagaataaggccgtgtggctgagctacggg
accttcctgctccagcagggtcagagtgacagtgccagtgttctcctgcagagggcgctg
acgagtctgccctccaaagaaagtgtggatgtgatcgccaagttcgctcagctggagttc
cgttatggtgattcagagaaaggtcgcaccatgtttgacaaagtcctgacgagctacccg
aaacgcacagacctctggtccgtcttcatcgacctcatggtcaaacgtggggcacagaag
gaagtcagggagctgtttgaccgtgtgatccacctgagtgtttcagtgaaaaagatcaag
ttcttctttaagcgctatttggagtacgagaagaagcacggcactccgcagagcatccag
tcagtcaaggagaaggccatggagtttgtggaagctaaaggcacagaggccgccaactaa
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integrated database retrieval system
