KEGG   Clinocottus analis (woolly sculpin): 137793343
Entry
137793343         CDS       T10471                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
cana  Clinocottus analis (woolly sculpin)
Pathway
cana03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:cana00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    137793343 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cana03021]
    137793343 (taf5)
   03036 Chromosome and associated proteins [BR:cana03036]
    137793343 (taf5)
Transcription machinery [BR:cana03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     137793343 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     137793343 (taf5)
Chromosome and associated proteins [BR:cana03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     137793343 (taf5)
    STAGA complex
     137793343 (taf5)
    TFTC complex
     137793343 (taf5)
    SAGA complex
     137793343 (taf5)
    SLIK complex
     137793343 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd WDR55 Beta-prop_EML Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st Beta-prop_Aladin WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_DCAF4 Beta-prop_WDR41 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_DCAF12 WD40_RFWD3 Tricorn_2nd Beta-prop_WDR19_1st WD_LRWD1 Beta-prop_Nup120_160 LisH_PAC1 LisH_TPL VID27 Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 137793343
NCBI-ProteinID: XP_068445535
LinkDB
Position
Unknown
AA seq 749 aa
MAAVQGGLVDAVEEKDIKTEPSSDGVANNNANDARPPSTSPGSSAPAGSNKSAAGAPEDQ
QTLLAVLQFLRKNKLTESVDILRREAGLPEDALDLKAGDSSGVGSGGSAGSGETEGGDAS
SLLSRVTASSAAVAPAPTKAAGEDQPDVNVVLSAYSQQGDPKLYPVYYSGLKRFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNYETEAKAFFEKFSGDQECYYEDDLRILSSLSKREH
MRGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKREANKAKVYYGLLKEPEIELPLDDEDEEAENEDGKPKKKKPKKDSM
GNKSKKQDPHAPAQTRIPLPELKDSDKLDKIMYMKEATKRIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLVAGGFADSTVRVWSVTPKKLRKVKSAADLNLIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
THFSPHGYYFISGGHDRVARLWATDHYQPLRMFSGHLADVTCTRFHPNSNYVATGSSDRT
IRLWDVLNGNCVRIFTGHKGPIHALAFSPNGKFLASGATDNRVLLWDIGHGLMIGELKGH
TDSIYSLRFSRDGEILASGSMDNTVRLWNALKAFDDLETDDFTAATGHVHLQDNSQELLL
GTYMSKSTPVIHLHFTRRNLLLAAGSYNP
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggcggccgtacaaggtggtctggtcgacgcggtcgaagaaaaggacataaaaacagaa
ccctcaagcgatggcgttgcaaataataatgcaaacgacgccagaccgccctccacgtcc
cccggctccagtgctccggctggaagtaacaaatccgcggcgggagccccggaggaccag
cagacgctgctggcagtactgcaattcctgaggaagaacaaactgaccgagtccgtggac
attttgcgtcgtgaagcgggattaccagaggatgctctggatctgaaggcgggagactca
tccggggtcggttcgggtggttctgcgggaagtggagagacagagggcggggatgcgagc
tctctcctcagccgggtgaccgcctcatccgccgctgtcgccccggcgccaactaaagct
gctggggaggaccagccggatgtcaacgtggtgctgtcagcttacagccagcagggagac
ccaaagctgtacccggtttactacagcggcctgaagaggttcatagaatcggtgttggac
tgtcaccgagcagagctctcacaagtattctacccgctgtttgtgcacatgtatctggaa
ctggtgtacaacaattacgaaactgaggccaaggcgttctttgaaaagtttagcggcgat
caggagtgttactacgaagatgacttacggattttgtccagcttatccaagagggagcac
atgagaggcaacgagactctgctggacttccgtaccagcaagtttgtcctgcgtatctcc
cgtgactcttaccagctgctgaagaggcatttgcaggagcgtcagaacaaccagatctgg
aatatcatacaagagcatctctacattgacattttcgatggcatgccacgcagcaagagc
cagattgacgccatgtctggcagcctggcaggagagggcaaacgagaggccaataaggcc
aaggtttactatggcctgctgaaggaaccagaaattgagcttcctcttgatgatgaggat
gaggaggcagagaatgaggatggtaaacccaagaagaagaaacccaaaaaggacagcatg
ggcaacaagagcaagaagcaggatcctcatgcgcctgcacagactagaatccctcttcca
gaactaaaggattcagacaagctggacaagatcatgtacatgaaagaggccaccaagagg
atccgcctgggaccagataacctgccctccatctgcttctactcttttctcaatgcttac
cagggtctcactgcagtggacttcacagatgactccagcctggtcgcaggaggctttgct
gactccacagtacgggtgtggagtgtcacaccaaaaaagctgcgcaaggtcaagtctgca
gcagacttgaatctgattgacaaagagtcggacgatgtgctggagagaatcatggatgag
aagacagccagcgagtcaaagatcctctatggacacagtggcccggtgtatggcatcagc
tttagcccagacagaaactacttgctatcaagttctgaagatggcacagtccggctgtgg
agtctccaaacatttacttgtctggtgggctacaaaggtcacaactacccagtgtgggac
acacacttttccccccatgggtactattttatctctgggggacacgacagagttgcccgt
ctctgggcaacagatcactaccagcctctgaggatgttttctggtcacctagctgatgtc
acatgcacccgcttccaccctaactccaattacgtggccacaggttcttctgatcgtacc
atccgactctgggatgtcctgaatggaaactgtgttcgcatcttcaccggtcacaagggt
cccatccatgcgctggccttctctcccaatggtaagttcttggcttcaggagccactgat
aacagagttcttctgtgggacattggtcatgggctgatgatcggagagcttaaaggccac
acagactccatctactccctccggttcagcagagatggagagatcctcgcctccggctcg
atggacaacacggttcgtctgtggaatgctctgaaagcatttgacgatttagagacggat
gatttcacagcggctacaggacacgtccatttacaagataactctcaggagcttctgctg
ggcacctacatgtcaaaatcaacacctgtcatacaccttcacttcacccgaaggaacctg
ctgttggccgctggttcctacaatccatga

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