Clinocottus analis (woolly sculpin): 137793441
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Entry
137793441 CDS
T10471
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03013
Nucleocytoplasmic transport
cana03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
137793441
03015 mRNA surveillance pathway
137793441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137793441
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
137793441
5.6.2.5 RNA 5'-3' helicase
137793441
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
137793441
mRNA cycle factors
Common to processing body (P body) and stress granule
137793441
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
137793441
NCBI-ProteinID:
XP_068445700
LinkDB
All DBs
Position
Unknown
AA seq
1110 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYDFTDFTLPSQTQTQGHTQSQLDSQVNG
PDEGLLNGGLEDSVAKASQLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDIFKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDET
SVSGYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPG
TGKTVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESP
VSFLALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICC
TCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKA
AKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGF
DFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITP
YEGQRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLND
PRRLNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSK
PRKLVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAGIHLISGRPSNMYFQTHDQIGMI
GAGPGHMAAMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQRVRGSAHQ
GAGQGNGPNSQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFK
SQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttcccagaccctcaccttcctggacaccgaggaa
acggagttgctcggagcggacacccagggctccgagtacgacttcaccgacttcaccctt
cccagccagactcagacccaaggccacacccagagccagctggacagccaggtaaacggt
cctgatgagggtcttctcaacgggggactggaggactccgtggccaaagccagccagctg
ttggccgagctcaactttgaggaggatgaagaagacacgtactacaccaaagacctgcct
ctgcacgcatgcagctactgcggtattcatgatccagcatgtgtggtctactgcaatacc
agcaaaaagtggttctgtaatggacgtggcaacacatctggcagtcacattgttaaccac
ttggtgagagccaaatgcaaagaagtgacgctgcataaagatggcccactgggcgagaca
gtgctggagtgttacaactgtggctgtcgcaacgtcttccttctgggtttcatcccggcg
aaggcagactcagtggtggtactactctgcaggcagccttgtgccagccagagtagcctg
aaggacatcaactgggatagctcacagtggcaaccacttatccaggaccgctgctttctg
tcctggctggtaaagatcccatcggagcaggagcagcttcgggcacgtcagattaccgcc
cagcagatcaacaagttggaggagctctggaaggacaaccccactgccaccttggaagac
ctggagaaacctggagtggacgaggagccccagcacgtgctgctgcgctatgaggatgcc
taccagtaccaaaacatctttgggcctttggtcaaactggaggctgactacgacaagaag
cttaaggagtcccagactcaagacaatataacagtcaggtgggacctggggctgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctcatgcaa
ggtgatgagatctgcttgcggtacaagggagacctggcccctctgtggaaaggcataggt
catgtcatcaaagtccctgacatctttaaagattatggggatgaaattgccatcgagttg
cgtagcagtgttggagcacctgtggaaatccctcacaacttccaagtggactttgtgtgg
aagtccacatccttcgacaggatgcagagcgccctgaagacctttgcggtggatgagacc
tccgtgtctggttatatttaccataaactgctgggccacgaggtagaggatgtcaccatc
aagtgccagctgccaaagcgcttcactgcccagggcctgcccgacctcaatcactcacag
gtgtacgctgtgaagacggtgctgcaaaggcctctgagtctcatccaaggtcctcctggc
accgggaagactgtcacttctgccaccatcgtctaccacttgtcccgtcaaggaaatgga
ccagtgctggtgtgcgctcccagtaacatcgccgtggatcagttgacggagaagatcgac
aagactggactgaaggtcgtcaggctttgtgctaagagccgggaggccatcgagtcaccg
gtctccttcctagctctgcacaaccagatcagcaacatggacagcatgccagagcttcag
aaactacagcagctgaaggatgagaccggtgagctgtcatccgctgatgagaaacgctac
agggctttgaaacgcacagctgagagggagctgctcatgaacgctgacgttatctgttgc
acctgcgtcggggccggagatcctcgtctggccaagatgcagttccgctccatcctgatt
gatgagagcacccaggccaccgagccggagtgtatggtgcctgtggtgcttggcgccaag
cagctaattctggtgggcgaccactgccagctgggtcctgtggtgatgtgtaagaaagca
gccaaggcaggtctgtcccagtccctgtttgaacgcctggtggttctggggattcgcccg
atccgccttcaggtccagtaccgcatgcacccggctctcagcgccttcccctccaacatc
ttctatgagggctccctgcagaacggcgtcactgcagctgaccgcatcaagaaaggcttt
gacttccagtggccgcaaccagacaagcccatgttcttctatgtgactcagggtcaagag
gagattgccagctctggaacctcctaccttaacaggacggaggctgcaaacgtggagaag
atcaccaccaggctgctgaaggccggagccaaacccgaccagatcggcatcatcaccccg
tacgagggtcagcgctcctacctggtccagtacatgcagttcagcggctccctgcacacc
aaactctatcagcaagtggaaattgccagcgtggacgcctttcagggcagagagaaggat
ttcatcatcctttcttgtgttcgtgccaacgaacaccagggaatcggcttcctgaatgac
ccgcgtcgtctgaacgtggcgctgaccagagccaagtacggcgtgatcatcgtgggaaac
cccaaggctctctccaagcagccgctgtggaacaacctgctgaacaactacaaggaacag
aaggtcctcgtggagggtcccctgaacaacctgagggagagcctcatgcagttcagcaag
ccccgcaagctggtcaacaccatcaaccccggtggacgcttcatgagcaccgcgatgtac
gacgcccgcgaggctctcatccccggctctgcttacgaccgcagtaatgctggtattcat
ttaatatccggacgcccgtccaacatgtactttcaaactcacgaccagattgggatgatt
ggggcgggccccggtcacatggccgccatgaatatccccattcccttcaacctggtgatg
cctccaatgcctccgccgagctacctgggtcagaccaacggccctgctgcaggtcgtgga
gctatgaagggtaagcctgggcgtggcgggcggcagagggtccgagggtcggcacaccag
ggtgccggtcagggtaacggaccgaacagccaagccagccaggacggggcctcccagccc
ttctcccaggggccgctgacacagggctacatctccatgagccagccctcccagatgagc
cagcctggcctctcccagccagagctgtcccaggacagctacctgggcgacgagttcaag
tcccagatcgacgtggcgttgtcccaggactcgacttaccagggtgaacgtgcgtaccag
catggtggggtgactggactgtcacagtactaa
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integrated database retrieval system
