Clinocottus analis (woolly sculpin): 137794143
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Entry
137794143 CDS
T10471
Name
(RefSeq) collagen alpha-2(V) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137794143
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137794143
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137794143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
137794143
NCBI-ProteinID:
XP_068446879
LinkDB
All DBs
Position
Unknown
AA seq
1544 aa
AA seq
DB search
MWSPEPCRVCVCVTGAAVCEDVVCEDLGDCEKSVTPKGECCPVCLTAGPSSALSSDPTAA
ADEKKKESCTVDGEVHQHDHIWKPEPCRVCVCDNGVAVCDEVQCELLHGCEKAVTRQGEC
CPVCDSFASASRTTEMMSFKGQKGEPGDIPQVVGLPGPSGPSGRHGAPGNTGKRGFKGRR
GLTGPQGFDGEPGVPGNPGEPGPPGPPSHPGGNLVSQMAAGFGEKSSVAGMVSGTRGEPG
PRGPSGTPGQQGPSGAQGYPGEAGDTGPMGEPGHRGPDGPPGKTGLDGEAGAAGAPGEPG
FPGSVGARGFPGLPGHPGLKGPKGIAGLFGPKGESGALGTKGKSGTPGAMGAAGPPGPAG
MQGERGRAGATGPLGKRGENGHVGKPGPLGPIGIPGVQGFPGNAGMKGEAGPTGVRGSAG
QQGPRGDGGHVGPAGPSGQQGALGPDGAPGGRGSGGLAGVQGPTGLLGQPGPPGPQGTTG
TAGPKGQLGEAGLFGFKGEAGFKGERGDHGVPGPLGPMGDDGKRGPRGDAGSIGPPGAQG
ETGAPGNRGFPGGDGLPGQKGAMGERGLSGSTGTKGLPGDLGRNGESGLTGARGLSGLLG
AQGSEGKQGPMGSAGDDGKQGPAGSNGGRGSAGPMGLPGPKGFAGDAGKIGEAGGAGVPG
QRGVNGKDGEEGAAGPAGPAGVAGTRGEQGPQGLHGFQGLPGSSGPPGESGKPGVEGLAG
EAGVGGGTGPRGERGPPGERGGIGSNGLQGAKGGPGGPGPDGAKGSVGPKGAVGEGGGPG
LQGMAGERGISGPSGPKGDAGSAGASGQEGNAGADGARGLPGSVGPAGSSGPNGEKGETG
PPGPAGRRGTRGITGSTGETGPTGAVGFPGPAGPDGQPGVKGDAGGAGLNGEGGAPGPQG
MAGKSGGQGPVGVTGLKGGRGTQGATGSTGFPGLPGGVGPVGSNGAVGADGPIGAPGKSG
SAGIIGENGAPGRQGDRGASGAPGSPGEKGDSGEDGTGGPDGPTGPNGAAGQRGIVGQPG
LRGEAGLPGLPGPAGPPGKAGASGVQGGTGPAGGVGLSGAKGPRGDAGPEGINGADGPPG
KDGLIGARGDRGSAGPEGLAGAAGSPGTEGSVGMTGGPGQRGENGPVGSAGPQGATGVRG
KVGPQGPQGEKGAAGETGERGQKGHRGFTGLHGLPGTTGATGDAGATGIVGPAGPRGPPG
VAGPPGKEGNIGHPGPMGAPGSRGSGGEIGAQGPPGDAGPTGAPGPPGPPSMGLEDLYAP
SYDYDGNAPGPEAVEFLEDDVAADPPPLPEINQDEALPNKEAAVLRADTGVHASLKTLSG
HLQNLRSPDGSQLNPGKTCQDIKQCYPQKKSGEYWIDPNQGSTKDAIKVFCNMENGETCI
SANPANIPRKAWWTKSSPSANKPVWFEADMNGGTKFHYGNSEERPNVVAVQMKLLQLLSR
ESHQNITYHCRNSVAYKDERNTNLKKALVLKGSNGQELRAQGNVRLRYTVMEDGCTKSNG
QWGTTVIEFRTQTSARLPVVDVAPMDVGKPDQEFGLDIGPVCFS
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atgtggtccccggagccgtgtcgggtgtgtgtgtgcgttacgggggccgccgtgtgtgag
gacgtggtttgcgaggacctcggcgactgtgagaaatctgtgacccccaagggcgagtgt
tgccccgtgtgcttgactgcaggtccatcctcggccctcagttcagaccccacagcagct
gcagatgagaagaaaaaggaaagctgcacggtggacggggaggtccaccagcacgaccac
atctggaaaccggagccctgtcgcgtgtgcgtctgtgacaacggcgtcgccgtctgcgac
gaggtgcagtgcgagctgctccacggctgcgagaaggcggtcacgcgccagggcgagtgc
tgccccgtgtgcgacagcttcgccagcgccagccgcacgacagaaatgatgagcttcaag
ggacagaaaggtgaaccaggtgatatcccacaagttgtggggctccctggaccttccgga
ccctcggggcgtcatggagctcctggaaacactggaaagagaggcttcaaaggcaggcgg
ggattgacgggccctcaaggatttgacggagagcccggtgtgccaggaaatccaggagag
ccgggacccccaggccccccgagccaccctgggggcaacctggtgtcacagatggcggca
ggtttcggggagaagtccagcgtggccgggatggtgtcgggaacgaggggtgaaccagga
ccacgaggaccttcagggacgcccggacaacaaggtccatcaggggctcagggatatccg
ggagaggctggagacacaggaccgatgggggagccgggtcaccgaggaccagacgggcct
cctgggaaaaccggacttgatggggaagctggagctgcaggtgctcccggagaaccagga
tttccaggatctgtgggagcaagaggattcccaggacttcctggtcatccaggactgaaa
ggtcccaagggaattgccggtctttttgggccaaaaggagagtccggagcgctaggaact
aagggtaaatccggtactccgggtgcgatgggtgctgcaggcccaccgggaccagcgggc
atgcagggagaacgaggccgagccggagccaccggtcctctgggaaaacgtggtgaaaac
ggccatgttggcaaacccggtcctctgggtccgataggaatccccggagttcaaggattt
cccggtaacgcaggaatgaagggtgaagcaggaccaacgggggtccgaggaagtgcgggc
cagcagggccccagaggggacggcggtcacgtgggacccgccgggccgtcgggacagcag
ggtgctttaggacctgacggagctccgggtggccgcggctctggaggtctcgcaggtgtc
cagggtccaacagggctgttggggcaacccggcccccccggccctcagggaaccacagga
acagcaggaccaaaaggccaattgggcgaagctggactgtttggattcaaaggagaagct
ggattcaagggggaaagaggcgaccacggcgttccaggcccattgggcccgatgggagac
gacggcaaacgtggaccccgaggtgacgccggatccatcgggcctccaggagctcaagga
gagacaggagctccaggaaacagaggtttcccaggtggagacggtttaccaggacaaaag
ggagccatgggggaaagaggactgtcggggtcgaccggcaccaaaggtttacctggagat
ctaggacgtaatggagagtccggtctaacaggagctcggggtctgtcaggacttcttggg
gcccagggatccgaggggaagcaaggaccaatgggctcagccggagacgacggcaaacag
ggaccagccggttctaacgggggccgcgggtcagcgggaccgatgggcctgccgggaccg
aaaggcttcgctggtgacgctggcaagatcggagaggctggcggcgccggggttccaggt
caaaggggcgtgaatggaaaagacggagaggaaggcgctgctggtccagctggtccagct
ggtgttgcaggaacgaggggagagcagggaccacagggactgcatggtttccagggcttg
ccaggatcatcaggaccacctggagagtcaggaaaaccaggtgttgagggtcttgctgga
gaagctggtgtcggtggaggaactggaccccggggagaaagaggacctccaggagagaga
gggggaatcgggtctaatgggctgcagggagccaaaggaggtccaggtggaccaggacca
gatggagccaagggtagcgtcggtccaaagggggctgtcggagaggggggaggtccagga
ctccaggggatggccggagagagaggcatatccggaccttcaggcccgaagggagacgca
ggctctgctggagcgagcggacaggaggggaacgccggcgccgacggtgcacgggggctt
cctggttctgtgggacctgctggttctagtggacccaatggagagaagggtgagaccggc
ccgccaggacctgcaggacgccgtggaacgagaggaatcactggttctactggtgaaact
ggtcctactggtgccgttggcttccctggacccgctggtcctgatggtcaacctggggtc
aaaggtgacgccggtggggcaggtctgaacggagagggaggagctcctggaccacagggg
atggctgggaaatcaggaggacaggggcctgttggagtgacaggattgaagggtggcaga
ggaacccagggggcaacgggctctactggtttccccgggctgcctggaggagtcggccct
gttggctctaatggtgctgttggggcagacgggccaataggagctccaggaaagtcggga
tctgccgggatcatcggggagaacggcgctccgggacgtcaaggagacagaggagcttca
ggagcgccgggcagccccggagagaagggagactctggagaggacggtaccgggggcccg
gacgggccgactggacctaacggcgccgcaggacagcgaggcatcgtggggcagcctgga
ctgagaggagaggcgggcctaccgggtctgccgggtcccgctggtccacctgggaaagcc
ggagcgtctggagttcagggaggcacggggcccgccggtggagtcggtttatcgggggcc
aaagggccgagaggagacgccggacctgaggggatcaatggagcggacgggcctcctggg
aaggacggtctcataggagccaggggagacaggggcagtgcgggtccagaaggtctggct
ggtgctgcaggttctccaggaactgagggttctgtgggtatgactggaggtccgggacaa
agaggcgagaacggtcccgtgggatccgctggaccccaaggagcaaccggagtacggggg
aaagtgggccctcaaggaccacagggagagaaaggagccgccggagaaacaggagagagg
ggacagaaaggacaccgaggtttcaccgggctccacggtttgccaggaacgactggcgcc
acaggcgacgccggggcgacaggtattgttggaccagcagggccgaggggtcctccagga
gtggcgggccctccaggaaaggaaggaaacatcggtcatcccggaccgatgggcgctcca
ggaagcagaggatccggcggtgaaatcggagcacagggtccacctggtgatgcaggaccg
accggcgctccgggcccccctggacctccctccatgggtctggaggacctctacgctccc
tcttacgattacgacgggaacgcccccgggccagaagccgtggagttcctcgaggacgac
gtggccgccgaccctcctccgctcccggagatcaaccaagacgaagccctccccaataag
gaggcggccgtcctgcgcgcagacaccggagtccacgcctcgctgaagaccctcagcgga
catctgcaaaacctccgcagtcctgatggcagccagctgaaccctgggaaaacctgccag
gacatcaagcagtgctacccccagaagaagagcggtgagtactggattgatccaaatcaa
ggaagcacaaaagatgccatcaaggtcttctgtaatatggaaaatggtgaaacctgcatc
tccgccaacccggccaacattccccgcaaagcctggtggaccaagtccagtcccagcgcc
aacaaacccgtctggttcgaagccgacatgaacggtggaaccaaattccactatggaaac
agcgaggagcggcccaacgtggtggcggttcagatgaagctgctgcagctcttgtccaga
gagtcgcaccagaacatcacgtaccactgcaggaacagcgtggcgtacaaagacgagagg
aacaccaacctgaagaaagctctggtcctcaaaggctccaacggccaggagctgagagcg
caagggaacgtgcgcctcaggtacaccgtcatggaggacggctgcacgaaatcaaacggc
cagtggggcacgacggtgatcgagttcaggactcagacgtccgcccggctgcccgtggtg
gacgtggctcccatggacgtcgggaaaccggatcaggagttcggcctggacatcggcccc
gtgtgcttctcataa
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