Clinocottus analis (woolly sculpin): 137794809
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Entry
137794809 CDS
T10471
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137794809
03036 Chromosome and associated proteins [BR:
cana03036
]
137794809
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137794809
Chromosome and associated proteins [BR:
cana03036
]
Eukaryotic type
Gene silencing
piRNA pathway
137794809
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
UBA_Ucp12
RRM_ACIN1
THOC7
Mei5_like
UBA2_UBAP-1
Motif
Other DBs
NCBI-GeneID:
137794809
NCBI-ProteinID:
XP_068447925
LinkDB
All DBs
Position
Unknown
AA seq
1948 aa
AA seq
DB search
MEEKKKKKQEEKTKTDVAQKTAADQKPKVPEPAPTKPSPGPPHHHQHHHHHRPASPTLPL
SSSSSSGNGKRASSSSQLPTQTPQQCQLSSASARYPPREVPPRFRQQEHKQLLKRGQPLP
AGALSALTLSCSSSSSSSLPSSSYSSPSTTTSSTSPNSATSTVGKRHPDTSLQSGSVAQY
ETSPWGDSLPVDSACSANTWDKVIIDRSDTEAWSSISRSSDPGHPAAPECSLGSASSNTD
TSAVTTTSSNSFLSMATGAAGQQAHYSSLKANNNMMTGPGSANTCGSRGWGSDGKQDGMN
GGRVGAPNNWGSTNLNLNLNPNANPSAWPVLGQEGGGGCGIGPNVVSNSPSLPPGMNGNM
GNGSLGGADNGGGGWGGMMSTNENDQQHSSTNTSLSFKMDPSNLNTDGPNHTKQQQAQDP
MSPIHGITGWGGQSPTESSQLNGDRTSSSVWGSGETKAADSPKESGWDSTPSGGLSGWGR
QGSGGGSSGSGGWADWKKSSGGGEASKGWDSVDAGSSGSGQEQQPSSWGQQPRTAPASDG
SGDSNESHSGRDRSSSTDCTPLLPRQDLDPRVLSNMGWGQTPIRQHTVWEMEEANSDEGK
MKSSSASTGCSSSNVRPSSINGGTVNPKIGPSQRPASGEKSDNEGSSSSGWRAPSTQPIQ
TVSGWGDPPQSLSKAQNGTNSGWGDPLPPNAPRNGGTPSWGSEEKSSGWDDGMTKSQPTN
WGEGPKSSHGWGNGHGGNSNGGGNGHGGNSNGGNSNGGNSNGGNSHGGSNGTSTGEWGEV
EVKKNGSSSSMWEGEGGNGGGGGWKESPRGGNRGGGGGGSGGGGWNKPAPAPAVSNSSWG
EIPRVNGPVQGNWGSSKPQESGSSSSSNGSGGGGSMGSWGGPGTVKQNSSSWGNGSKQDQ
GMDPTGWEEPSPPSIRRKMEIDDGTSTWGEPATLNKTGNMWDRKNPNNNPGSSGPPPSKG
GVVIIPNNNNNNHSVGPGNNNHHHTHHMHHHPHHSQHPPPLQHHGNNNGPSNNGPPHPGA
GPQGRPPLANPGWGEIPNVQPKSEPAWGEPAAPTSSVDNGTAAWGKSTGAPPVGGGGGGG
GVGGWGDGSHEPSGPYGRANGPTGSSACKPGPKPMQDGWGNGGEEMGMSTNQWDAEDGDM
WNSPTSQESSSSCNSWGNGPKKGPSKGKMGKPDEAWIMNRLIKQLTDMGFPRDPAEEALK
SNNMNLDQAMSALLEKKTDLDKRGMGMSDYSNGMNKPMMCRPSALSKDPSDRTSFLDKDG
GLSDDAPPSPFLPSPSLKLPLANSSLPGQGLGQGNPGLAMQNLNNRQIPSGMFGSSGAAQ
TRAMQQQQPPQPPVPSLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPIN
PQQMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTITNMQQQIQQHQR
QLYQALLMKQQQHPSHSSSAGLHNPGGPSGGHGSGKSTHDPYAGAHQAPGLADTLHTKEP
PSSPNAYSNYPLSGLNPNMNVNCMEVGGMSLKEPPQPQSRLSQWTHSNSMDGLSGNSSHM
ENNLNKHGAISAASNLGPPGKPPHLEDSYSPYNLMSRSESPTSPMVPQDSWGQAKSPNEK
ISNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIHDVNRYLLRDRN
GGKMSDMKSTWSPGPISQGQASLSHELWKVPQGPRSNAAPTRPPPGLSHNKPSSTWGGNS
LGLAQGWSGSYTNEGTTWSTDSSSRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLVTFHLN
LTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLGATTTSW
QANSVTNQNRMGGAAQSHSMNQWSSGGGGGGCGGKSSGGGGGGDLLWGGMPHYSSLWGPP
SGDDARVIGSPTSINTLLPGDLLSGESM
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaaacaagaagaaaagaccaagacggacgtcgctcagaaa
acggctgctgatcagaaacccaaagtgccagagcctgctcccactaagcccagtcccggc
ccaccccaccaccaccaacaccaccatcaccaccgccccgccagccctacgctgcccctc
tcctcctcctcttcttctggcaatggcaagcgcgcctcctccagtagccaactcccgacc
cagactccccagcagtgccagttgtcctctgccagtgctcgctacccgcccagagaggtg
cccccgcgcttccgccagcaggagcacaagcagctcctgaagagaggccagccactgcct
gcaggagccctcagcgcgctcaccctctcctgttcctcttcctcctcctcgtctttgccc
tcatcgtcttactcctctccttccacgactaccagcagcacttccccaaactcggccacg
tccactgtgggcaaacgccacccagacacatccctccagagtggctccgttgcccagtat
gagacctctccttggggagactctttgccagttgacagcgcctgcagtgccaacacctgg
gacaaagtgattattgaccgaagtgacacagaagcttggtcctccatcagccgcagtagt
gaccccggccaccccgcagcaccagaatgctccttgggctcagctagctctaacacagac
acaagtgctgtcactaccactagtagtaatagttttctgagtatggccacaggtgccgca
ggccagcaggcccactactcctctcttaaagctaacaataacatgatgacgggacctggg
tcagccaacacatgcggtagtcgaggctggggctcagatgggaaacaagatggtatgaat
ggtggtcgagtaggtgcacccaataactggggctctaccaatttgaacttgaacctcaat
cccaatgccaacccatcagcttggcctgttctgggccaggagggtggtggaggttgtggt
attggccctaatgtggtgtcaaactctccatccctcccaccaggcatgaatggaaacatg
ggaaatgggagcctgggaggtgcggataatggtgggggaggttggggtggcatgatgagt
actaatgaaaatgatcaacagcactcttcaactaacacaagcttgtccttcaaaatggat
ccttctaacctcaacactgatggaccaaaccacactaagcagcagcaagctcaggatcct
atgagccctatccatgggataactggctggggaggccagtcacccactgaatcatcccag
ctgaatggggacagaacaagcagctctgtatggggtagtggagaaaccaaggcagctgac
tctcccaaggaatcaggctgggactcaactccctctggaggcctttctggttggggccgg
caaggcagtggtggtgggagcagtggtagtgggggctgggctgactggaagaaatcctct
ggtggcggagaggcatcgaaaggctgggactcagtagatgctggtagctctggttcaggc
caagagcagcaacctagctcatgggggcagcagcccagaacagccccagcaagcgacggt
agtggggacagcaacgaaagtcactctggccgagacaggtcttccagcacggattgtacc
cctctgctaccccggcaggacctggaccctagggtgctgagtaacatgggttggggacag
acccctatccgacagcacactgtatgggagatggaagaagccaactcggatgaagggaaa
atgaaaagcagctcagcctccacaggatgctccagctctaatgttagaccctcatccatc
aatggaggtaccgtcaacccaaaaattggccctagtcagaggcctgcgtctggagaaaaa
agtgataatgaaggatcatcatcttctggctggagagccccttcaactcagcctatccaa
actgtatcaggatggggggaccccccacagtcactcagcaaagcgcagaatggcactaac
agtggctggggggaccctttgcctcccaatgcacccagaaatggaggcacaccgtcctgg
ggttctgaggaaaagtcatccggttgggacgatggcatgacgaaaagtcagccgactaac
tggggagagggccccaaaagctcccatgggtggggcaacggtcatggcggtaacagtaat
ggcggcggcaacggtcatggcggcaacagtaatggcggcaacagtaatggcggcaacagt
aatggtggcaacagtcatggtggctctaacggcacaagcacaggagagtggggagaggtc
gaggtcaagaagaatggatcatccagcagcatgtgggaaggtgaaggaggtaatggagga
ggtggtggatggaaggagagccccaggggaggaaatagaggtggtggaggaggaggaagt
ggaggcggaggctggaataagcctgctcctgctcctgccgtgagtaatagcagctggggg
gagatcccacgtgtcaatggcccagtgcaaggaaactggggctcttctaagccccaggaa
agcggcagcagcagcagcagcaatggtagcggaggaggtggcagcatgggctcatggggt
ggtccagggaccgtgaagcagaactcatcgagctggggaaatggcagcaaacaggaccaa
ggcatggatcccactggctgggaagagccctcccctccgtctattcgcaggaagatggag
attgacgatggaacgtccacctggggcgagcctgctaccttgaacaagactggcaacatg
tgggatcgcaaaaatcccaataataacccaggcagcagtggcccgccgcccagtaagggt
ggtgtagtgattatccccaacaataacaacaataatcactctgttggccctggcaacaac
aatcaccatcacacccaccacatgcaccaccaccctcatcatagccagcacccacctccc
ctgcaacaccatggaaacaacaatgggccatccaacaatggccccccacatccaggtgcg
ggcccccagggtagaccacccctcgccaacccaggttggggagaaattcccaatgttcag
cccaagtcagagcctgcttggggagagccagccgctccaacatcatctgtggacaatggc
accgctgcctggggcaagtccacaggggctcccccggttggtggtggaggaggtggaggt
ggagtaggaggatggggagacggtagtcacgagccctctggaccctacggcagggccaac
ggacccacaggttcttcagcctgcaagccaggtcccaaacctatgcaagatggctgggga
aatggaggggaggagatgggcatgtctactaaccaatgggatgctgaggatggggacatg
tggaacagccctacatcccaggagagcagctcttcttgcaactcctggggcaatggcccc
aagaagggcccgagcaagggcaagatgggcaagccagatgaagcttggataatgaaccgt
ctaatcaaacagctcactgacatgggctttccgagagaccctgctgaggaggctttgaag
agcaacaacatgaaccttgaccaggccatgagcgccctgttggagaagaagacggacctg
gacaagcggggcatgggcatgtctgattacagcaacggcatgaacaagcccatgatgtgt
cggccctctgctctctccaaagacccctccgaccgcacatcctttcttgacaaggatggt
ggtctgtcagatgatgcccccccatcaccgtttttgccttcccccagcctgaagctcccc
ctggccaacagtagccttcctgggcagggtctgggacagggcaacccggggctggccatg
caaaacttgaacaacagacagatacccagtggaatgtttggcagtagtggagcagcacaa
acccgggcgatgcagcagcagcagcctcctcagccaccagtgccatctctcagctcctcc
cagcctagtctacgtgctcaagtgcctcagtttctctcccctcaggtccaagcacagctc
ttgcagtttgcagcaaaaaacattggtctgaaccctgcacttttaacctcaccaataaac
cctcaacaaatgaccctcttgtaccaacttcagcagctgcaaatggcgtaccagcgttta
caaatccagcagcagatgatgcaggcgcaacgcaatgtttccggccccattagacaacaa
gagcagcaagttgcacgtacaatcaccaacatgcagcagcagatccagcagcaccagcgt
cagctgtaccaagcgctgctgatgaagcagcagcaacatccctctcactcctcctccgcc
ggtctgcataaccccggcggcccctccggaggacacggttccggcaaatcaacccatgac
ccatacgcaggcgcacaccaggctccgggcctagccgacacactgcacaccaaagagccg
ccgtcttcgcccaacgcctacagcaactaccctctctctggactgaatccaaacatgaat
gtaaactgcatggaggttgggggtatgtccctgaaggagcccccccaaccccaatcccgc
ctgtcccagtggacacactctaactccatggacggcctctctggcaactcctcacacatg
gagaacaacctcaataagcacggtgccatatctgctgcctctaacctgggcccccccggg
aagcctccccatctggaggactcgtacagcccttacaatctaatgtccagatctgagtcc
cccaccagccccatggtgccgcaagacagctggggccaagccaagagccccaatgaaaag
atctccaatgggaccaacatcaactggcccccagagttctgcccgggtgtgccgtggaag
ggccttcagaacatcgacccagagaatgaccccaacatgacccctggcagcgtgccaagc
ggccccaccatcaacaccaacattcacgacgtcaaccgatacctgctgcgggacaggaat
ggaggcaagatgtctgacatgaagtccacctggtccccgggtcccatctcccagggccaa
gcctctctgtcccacgagctgtggaaagtccctcaggggccacgcagcaacgctgcccct
actcggcccccaccgggtctcagccacaacaaaccctcctccacctggggcggcaactcg
ctgggcctggcccaaggctggagcggctcctacaccaatgagggaaccacctggagtact
gacagctccagcaggaccagcagctggctggtgctgaggaacctcaccccacaaatcgac
ggttcgactctgcggacgctgtgcatgcagcacggccccctggtcacattccacctcaac
ctgacccaggggaacgccgtggtgcgctacagctccaaggatgaggccgcgaaggcccag
aagtctctgcacatgtgtgtgcttggaaacaccaccatcctggcggagtttgccggcgag
gaggaggtgaaccgcttctttgcacaaggccagtccctgggggcgaccaccactagctgg
caggccaactcagtaaccaatcagaaccggatgggcggggcagcacagtcccactccatg
aaccagtggagcagcggcggcggcggcggcggctgcggaggcaagtccagcggcggcggc
ggcggcggcgacctgctgtggggcggcatgccccattactccagcctgtgggggccgccc
agcggagacgatgcccgcgtgatcgggagccccacctccatcaacaccctgctgcctgga
gatctgctgagtggagagtccatgtag
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integrated database retrieval system
