Clinocottus analis (woolly sculpin): 137794959
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Entry
137794959 CDS
T10471
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03030
DNA replication
cana03410
Base excision repair
cana03420
Nucleotide excision repair
cana03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137794959 (rfc1)
03410 Base excision repair
137794959 (rfc1)
03420 Nucleotide excision repair
137794959 (rfc1)
03430 Mismatch repair
137794959 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cana03032
]
137794959 (rfc1)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137794959 (rfc1)
DNA replication proteins [BR:
cana03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
137794959 (rfc1)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
137794959 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
RuvB_N
AAA_30
Rad17
AAA_33
AAA_16
AAA_17
AAA_14
nSTAND3
NTPase_1
RNA_helicase
AAA_7
TIP49
BRCT_2
Herpes_UL25
AAA_18
NPHP3_N
SKI
AAA_19
Motif
Other DBs
NCBI-GeneID:
137794959
NCBI-ProteinID:
XP_068448228
LinkDB
All DBs
Position
Unknown
AA seq
1192 aa
AA seq
DB search
MDIRRFFAPTSDRCAVQKPAPNGNVKTEEKKKKNPLSPDEEVKKKKKKETAKVKRSKPEE
KQKDNEKKRKKHAVIESDSEDEKPARKSNKSPKEKGTTGKMEPLPKKDPVQYVSETDSDS
DNFQTLKKVSKPKQNGSDKKAAKPGAGGAPPGVKEGLRSPAKPSSAQGKAAGKSPVTPKS
APPPPSRKQTPTSVLDYFGSAAVQRSDKKLVASTKRKAPAQEADDLMSDEQIAKELQMDE
DMMELEKQIHEDEEFARTLAMLDEEPQAKKARKGSDEKPAAAALPKMSRTDSAAGTKSGR
SQTDWRGSTSEDVIGPTPTKDPGPVKASSKLALMKKKDEEQDDGPRRKTPDSHTKMQISP
KKQPLASSSSNKKAAPKTGSTPATVKTSPEKPESTSTSPEDAEKKKVNSAAYRNFLNRDG
PRALGSKEIPQGGENCLEGCMFVLTGVMESMERDDAKCLIERYGGKVTGNISKKTTYLVQ
GRDSGVSKLEKAESFGTKILDEDGLLELIRTKPGKKSKYEITAEAESKASKTRTPPSRTL
KSTPKAQKISPSMGNSRSPHTPSPSKTGLARGHGARTRSGGTPPKRGSGPAARRDLGLSS
PSSSSARGKSSPAAAMADDVSLLWVDKYRPRSLKAVIGQQGDQSCANKLLRWLQNWNKHH
SGGSSKPAAARFGRFGGGKDDGSAYRAALLSGPPGVGKTTTAALVCEELGLSFVEMNASC
TRSKNSLKQVVAESLNNTSIESFYKGTSQTVSSKHVLIMDEVDGMAGNEDRGGIQEMIGL
VRSSKIPIIFMCNDRNHQKIRSLANYCFDLRFQRPRVEQIKGAMMSLAFKEGIKIPPPAL
NEMILASNQDVRQVIHNLSMWSAKDKVMTYDQCKSDATGARKDIKLGPFDVCRKVFCSGE
ESAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPKAAGGDLKSHLVLLSKTADSICDGDL
VDRQIRSRQNWSLLPTQAVYASVLPGELMKGYMSQFPTFPSWLGKHSSTNKHSRIAQELA
SHMCLKTLCSRQAVNLDYLYYLRQALLSPLQRLGAEGAADAVQLLDNYQLIKEDVDSIME
VSVWGGQPDPYSKLDSKVKAAFTRAYNREVHLTPYSLQAVKKGRGGGGGGEAELGGEDVD
NEARESEDEGVKADAMIKQKKKAKATKETKKEKKEDSGKGKGKGKGQGKGRK
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcgcttttttgcaccgacgtcagacaggtgtgcggtgcagaaaccagct
cccaatggaaacgtcaagacagaggagaagaagaagaagaatccgctctctccagacgag
gaagtgaagaagaagaagaaaaaggagaccgccaaggtgaaaagatccaaaccagaggag
aaacagaaggacaatgagaaaaaacggaagaagcacgcagtcatagagtccgactctgag
gatgaaaagccagcgaggaagtcaaacaagtcccccaaagagaaggggacgacgggcaaa
atggagccgctgcccaaaaaagatcctgtgcagtatgtctctgaaacagactcagacagt
gacaactttcagactttgaagaaggtctccaaacccaagcagaacggttcggacaaaaag
gcggccaaaccaggtgcgggcggtgctccgccgggggtcaaagaggggctgaggtccccg
gcaaagccctccagcgcgcaggggaaagccgcggggaagtctcccgtcaccccaaagtcg
gcgccgcctcctccatcccgcaaacaaacccccacctcagtcctcgactactttggcagt
gcggccgttcagcgctcggataagaagctcgtggccagcaccaaacgaaaggccccagca
caggaagcagatgacctgatgagtgatgagcaaatcgccaaagagctgcagatggatgag
gacatgatggagctggagaagcagatccacgaggacgaggagtttgccagaactctggcc
atgctggatgaggagcctcaagcaaagaaggctcgtaaaggctccgatgagaagccagcc
gctgctgcgcttcccaaaatgagccggacagactccgctgccggcaccaagagcggccgg
tcgcagaccgactggaggggcagcacgtcagaggatgtgattggcccgactcctacaaag
gaccccggccccgtcaaagccagctccaaactggccctgatgaagaaaaaggacgaggag
caagacgacggtccaaggagaaaaacgcccgattcgcacacaaaaatgcaaatctctccc
aaaaagcagcccctcgcttcgtcgagctcgaacaagaaggccgctcccaaaacgggaagc
acacctgccacggttaaaacgtctcccgagaaaccagagagcacaagtacgagtcccgag
gacgcggagaagaagaaagtcaactcggcagcttacaggaacttcctcaacagagatgga
ccacgagctctcggctccaaggaaatcccacagggtggggagaactgtttggagggctgc
atgttcgtgctgacgggggtcatggagtccatggagagggatgacgccaaatgcctcatc
gagcgctacggaggcaaagtgacgggcaacatcagcaagaagaccacgtacctggtgcag
ggcagagacagcggagtctccaagctcgagaaggcggagagtttcggcaccaagatcctt
gatgaggatggtctgctggagctgatcaggaccaaaccagggaagaagtcaaagtacgag
atcactgcagaggctgagagcaaagcctcaaagaccaggacccccccgagcaggacattg
aagagcaccccaaaagcccagaagatctctccctccatggggaattcccggtcccctcac
accccgagcccgtcaaagaccggcctggcccgaggccacggcgccaggaccagaagtggc
ggcactccacctaagagaggctcaggtcccgcagcccgccgggacctcggcctctcttcc
ccctcgtcatcctcagcccgaggaaagtcatccccggcggcggcgatggcggacgacgtc
agtctgctgtgggtggacaagtaccgcccgcgctctctgaaggctgtgattggtcaacag
ggagaccagagctgtgccaataagctgctgcgctggctgcagaactggaacaaacaccac
agcgggggctcgtccaagccagcagccgcgaggttcgggaggttcggaggagggaaagac
gatggatcagcgtacagagccgcgctgctctctggacctccgggcgtggggaagaccacc
acagcagctctagtctgcgaggagttgggcttgagcttcgtggagatgaacgcgagctgc
actcgcagcaaaaacagtctgaagcaagtcgtcgcggagtcgctcaacaacaccagcatc
gagagcttctacaaaggcacctctcagacagtgagcagtaaacacgtcctgatcatggat
gaggtcgatggcatggccggcaacgaggaccgcggaggaatacaggagatgatcggcctg
gtcagaagttcaaagattccaataatcttcatgtgcaacgatcgtaaccaccagaagatc
aggtcactggccaactactgcttcgatctgcgcttccagaggccgcgagtagaacagatc
aagggagccatgatgtccctcgccttcaaagagggaatcaagatcccgcctccagctctt
aacgagatgatcctcgcctccaatcaggacgtccgacaggtgatccacaacctgagcatg
tggtcggccaaagacaaggtgatgacgtacgaccagtgcaagtccgacgcaaccggtgcc
cgcaaggacatcaaactggggccgtttgatgtctgccggaaggtgttctgctccggcgag
gagagcgcccacatgagcctcatcgacaagtcggacctcttcttccacgactactcgctg
gcgccgctcttcgtccaggagaactacctgcacgttcggccgaaggccgccggcggcgac
ctgaagtcccacctggtgttgctcagcaagacggctgactccatctgtgacggagacctg
gtggaccgacagatccgctctcgccagaactggtcgttgctgcccacccaggccgtctat
gccagtgtgttaccaggcgagctgatgaagggctacatgagtcagttccccaccttcccc
agctggctcggcaagcactcctccaccaacaagcactcccgcatcgcccaggagctcgcc
tcgcacatgtgcttgaagacgctgtgcagcaggcaggcggtgaacctggactacttgtac
tacctgcggcaggcgctgctgagccccctgcagaggctcggagcggagggcgccgctgac
gccgtgcagctgctggacaactaccagctcatcaaggaagacgtggacagcatcatggag
gttagcgtctggggcgggcagccagacccctactccaaactggactctaaggtgaaagca
gcgttcacacgagcttacaacagagaagtccacctgacgccgtactctctgcaagcggtg
aagaagggccgcggcggtggcggcgggggggaggctgagttgggaggagaggacgtggac
aacgaggcgcgggagtccgaggacgagggcgtcaaagccgacgccatgatcaaacagaag
aagaaggccaaagcgaccaaggagacaaagaaagagaagaaggaagattctgggaagggc
aaaggcaaggggaaaggacaaggcaaggggaggaaatga
DBGET
integrated database retrieval system
