Clinocottus analis (woolly sculpin): 137795050
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Entry
137795050 CDS
T10471
Symbol
slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
137795050 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cana04121
]
137795050 (slx4)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137795050 (slx4)
Ubiquitin system [BR:
cana04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
137795050 (slx4)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
137795050 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BTB
Slx4
zf-met
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
137795050
NCBI-ProteinID:
XP_068448372
LinkDB
All DBs
Position
Unknown
AA seq
1775 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRKKPDESRPPSDGDKRRRNHRRGGHGDPGSARTGLDKPLVS
GGSEHDAGDAEASPVSSAAATAAAEASPVSSAAATAAAEASAMSSAAAAAAAAAAAAQRG
SKARDQVLQRMQQFKRAGPQRMLHRDEGPPANYEDDGHPPPPPLLLPLTQRRDTPNSFGS
GLQPDSDEALAQRLQQELDREAAEAQTVDLQDRGLFFCQICQRDLSRITPEGRTQHLNRC
LDESEGSAPAPPPPPVVLDCPICGKKFKSQKSRSAHLKRCSSDMGVAPAVLLQALQRQSE
ETQDVPTDTHTLTQAGGTKRKGSFKPGLPVRKKPRKKTAPLDEETMVALALSSSLLEQEQ
RGKRESETQPQTNVAASHIAMTSVLKSRPDPGQRRRKRKKGAVPHPPPLLLVQDAEAALT
RLQERVSALLLRSRAPSPPTPTRRPSCLPGWSGAAVLWQKSALLDEASAGRSDFYTPELR
EFITPWESATTDAASSSTTNKPQSSVQPVSEGTPGPDTRASMLPPSSQMSSSSRALLMDL
MELAEDGVTLTQSGRSASGPDKDKSVSQIRNIRLSGFVLEESEEQPDLCVSGFLPEPTHT
HSEDARRRARRTIAQPGANERGSHQSVALSRLASDLSNLVNNPQLSDLQLQVDSGEVYFA
HSFMLYARCPLLAEMVHESGFGVQEEGGPAVQRVLVNDVPGQAVLALLQYLYTARCSIPA
SLQAHVLELASRFDLQELQSLCARHQQDPATLGDQEYHVNQEENVSDQTNEAFAELLRSM
WDGEDEDDEGPDAAGGRDEGRELEDHQADDLASGDREIREENVNEEELEEIYEFAATQRK
REEEKDSTEEEKVDEEEDGDEVLTKPAEHKRSPSGLGVKQLQPNSDVEPDPGLHRSYSRL
FSDSWGVYEEAGPSSLPSTSATAATHTPQHQSPQKRSSEPALLRSSASPVDDLSLCSPPN
ASNLPIPGQSPGQVGDWGGGGDEGTEDQALKRESPSPRSVCELIVLSDSSEEMEVVLSSR
SPSPHPTCTVQKLQSYTQLKPQPDPKPNEPALLLKPSKSLDFSPDDPSAAPVQSHPGAWC
EQDPADCSPEVSWLIPSTPVQPVRSLTTSSTQTKSSMYRTQLFPKGDTSSHSVFSSPALP
FANRVRTSNSPVRVSAHVGPTEGSVPKLELDETCSSSLNSNFSCQRPGSRSVSEDRGACG
LPPCRPKLSSSASSKQDTPLHVQPQPYSSTPLHTEHKAPVLLATSPFHSDFDRSWTSLGK
DRAPSESPEKTELGGFHLSPLSGPSHPSSSSDRGLQGESSRQSRRSVESSSHDNTESELK
GRGLRHDKGEGERVGGNKDTGEEEEQEEAGNGEADVAESSFQQSFAAMDEPPMAFSDSWG
FDAVDLEADPGCFSLRLEDSGASSQQGERGPGRRAAARSSSSTDHRSSPGSHSVHLLNSR
VTASPPAKAHSSPPSTSVAAHMGLAFTPSPPDPTNQTTPEINSLLDSKIWDSWEEEDEEP
PPLSHRVNPSAQLKTPASSHSARRRTLVPITPLPHYSDMDTPELKNKLNRFGVRPLPKRQ
MILKLKEIHQYTHQLVSSEEEEEEAAPSASSAVQTKRPTAGSDVPGNRPVSCTQRVKFKE
PRTPADISPLKPDREEEEEPLSASQGSNTSSTAASEESESRSNPELCLSTDSDSDGGISA
SQTANRLQDLLRAVRSFILSDSKLYSQILQYQPLVLSQLQERLKAAGIRLGAAKLVDYLD
SQCITFTTAKPGSAPIRRRVKRTGRGAKAAGRKRP
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atggatgactcggaccaggactttgtggatctctgctcgaagctgctgaaacgagtccgc
aagaaaccggatgagtccagaccgccgagcgatggagacaaaaggaggagaaaccacaga
agagggggacacggggaccccgggtctgcccgtactggtttagacaagcctctggtctct
ggagggtctgaacacgatgcaggagatgctgaggcgtcccctgtgtcctcagcagcagca
acagcagctgctgaggcgtcccctgtgtcctcagcagcagcaacagcagctgctgaggcg
tccgctatgtcctcagcagcagcagcagcagcagcagcagcagcagcagcacagagaggc
tcaaaggcgagagaccaagttctccaaagaatgcagcagttcaagagagccgggccgcag
aggatgctgcacagagacgagggtccgcctgcaaactacgaggacgacggccatcctcct
cctcctcctcttcttcttcctttgacacaaagacgagatactcctaactctttcggttca
ggcctacagccggacagcgacgaggctctggcccagcggctgcagcaggagctggaccgg
gaagcagcggaggcccagacggtggacctgcaggacagaggcctcttcttctgtcaaatc
tgccagcgagatctgtcacgtattacacccgagggacgaacgcagcatctcaacaggtgt
ttggatgagagtgagggcagcgctccagctccgcctccgcctcccgttgtccttgactgt
cccatctgtggcaagaagttcaagtcccagaagagtcgctcggcccacttgaagcgatgc
tcctcagacatgggtgtcgcgccggctgtgctgctgcaggctctgcagagacagagcgag
gagacccaagatgtccccactgacactcacacgctcacacaggctggtggcactaaaaga
aaagggtcgttcaagcccggcctgccggtgaggaaaaagcccagaaagaagaccgcgccc
ctggacgaagagaccatggtggcgctggctttgtcgtcctcgctgctggaacaggagcag
cgggggaagagggagtcagagacgcaaccccaaacaaacgttgctgcctcgcacatcgcc
atgacttcggtattgaagtcgaggccagacccaggtcagcggcgcaggaagaggaaaaag
ggcgccgtccctcaccctcctccgctcctgctcgttcaggacgccgaggcggctctgacg
aggctgcaggagcgtgtctctgctctcctcctgcgcagtcgggccccgtccccccccacc
ccgacccgccgccccagctgtctgcccggctggagcggtgctgccgtcctctggcagaag
agcgcactgctggacgaagcctccgccggtcggtctgatttctacacgcccgagcttagg
gagttcatcacgccgtgggaatcagcaacgactgatgctgcctcctccagtaccaccaac
aagcctcagtcttctgtccaaccggtgagtgaaggcactcctggcccagacaccagggcc
tccatgctgccaccctcctcccagatgtcttcctccagccgggcactcctcatggacctg
atggagctggctgaagacggcgtgaccctcacccagagtggtcgctctgcttcaggccct
gacaaagacaagagtgtcagtcagatcagaaacattcgcctgagcggcttcgtcctggag
gagtccgaggagcagcctgacctctgtgtgagcggcttcctaccagaaccaacgcacacg
cattcagaggacgctcgccgccgagcaaggcggacgattgcgcagccgggggcgaatgaa
cgaggcagccaccaatcggtggcgctatccagactggcatcagacctgagcaacttggtg
aacaaccctcagctcagtgacctgcagctccaggtggacagtggggaggtctacttcgct
cattccttcatgctgtatgctcgatgccccctgctggcggaaatggtacatgaaagtggt
ttcggggtgcaggaagagggcgggcctgcagtccaaagagtgttggtgaatgacgtcccg
ggacaggctgtgttggccttgctgcagtatctctacacggcccgctgctccatcccagca
tcgctacaggctcatgtactggagctggcatctcggtttgacttgcaggagctacaatcg
ctttgcgcacgtcatcaacaggacccggcgactctgggagatcaggaataccacgtgaac
caggaggagaacgtcagcgaccaaacaaacgaggccttcgcggagctgctccgctccatg
tgggacggagaggatgaggacgacgagggcccagatgcagctggaggacgggacgaaggg
agagaattggaagatcatcaagcagatgaccttgcgtcaggggaccgagagatccgtgag
gagaacgtgaacgaggaagagctcgaggagatctacgagtttgccgccacgcagagaaag
agggaggaggagaaagacagcacggaggaggagaaggtggacgaggaagaagacggagat
gaagtgttaaccaaaccggcggaacacaaaagaagtccatcaggcctcggcgtaaaacaa
ctgcagccaaactctgacgttgagccggaccccgggctgcatcgcagctacagccgcctc
ttctctgactcctggggggtctacgaggaagcaggcccttcctccttaccgtccacttct
gccaccgctgcgacgcacacccctcaacaccaatcccctcagaaacgctcgtctgaaccc
gctttgctccggtcctcagcgagcccggttgacgacctttccctctgctctccaccaaat
gcgtccaacctgcctatcccgggtcagtctcccggtcaggtgggcgactggggtggcggt
ggggacgagggaacggaggatcaagctttgaagcgagaaagtcccagtcctcggagtgtt
tgcgagctcatcgttttgtctgactccagcgaggagatggaggtagttcttagttcccgc
agtccttcgccacatcccacttgcactgtccagaaactgcagagctacactcagttaaaa
ccacagccagacccgaagccgaatgaacccgccctgctgttgaaaccatccaagagttta
gattttagtcctgatgatccatctgcggcgccggttcaaagtcatccaggtgcctggtgt
gagcaggatccagcagactgttctccagaagtgtcctggctgatcccgtccacaccggtt
cagcccgttagaagcctcacgaccagctccactcagactaaaagcagcatgtacaggacg
cagctgttccctaaaggcgacacttcctcacactctgttttctcttcccctgctttacct
tttgccaacagagtgcgaacctccaacagtccagtcagagtctctgcccacgttggccca
acagagggcagtgttcccaagttagagctggatgagacgtgtagctccagtctaaactcc
aactttagttgtcaaagacccggtagtcgtagtgtgagtgaagatcgaggcgcgtgtgga
cttcccccgtgccgacctaagctctcaagctcggcgtcctctaagcaggatacacccctc
cacgtccagccccaaccgtacagcagcactcctctgcacactgagcacaaggcccccgtc
cttctggccacctccccattccacagcgactttgatagaagttggacaagtctaggaaag
gatagggcgccgtctgaaagcccggaaaagacagagttgggtggcttccatctttctccc
ctgtctggcccctcacatccctcatcttcctccgacagaggtcttcaaggtgagtcctct
cgtcaaagtcgtcgctctgttgagtccagcagtcacgacaacaccgagtccgagctcaag
gggagaggattaagacatgacaaaggggaaggagagagggtgggtggaaataaagacacg
ggtgaggaagaagagcaggaggaagcaggaaatggggaggcagatgttgctgaatccagt
ttccaacagagcttcgcggccatggacgagcccccgatggctttcagcgactcgtggggt
ttcgacgcagtagatttagaggcggacccgggctgcttcagtctgaggctggaggacagc
ggagcatccagccagcaaggcgagcggggcccgggacgacgagctgcagccaggtcgtcg
tcctctaccgaccaccggtcttccccaggcagtcacagtgtccatttactgaacagccgt
gtgactgcctcccctccagccaaagcccacagctcaccaccatccaccagtgtagcagct
catatgggcctcgcctttaccccttcaccacctgaccccaccaaccagacgactccagag
atcaacagcctcctggactccaaaatatgggacagctgggaggaagaggatgaggagcct
cctcctctctctcacagggtgaacccttccgctcagctcaaaacgccagcatcatcccat
agtgcacggcgtcgcaccttggtgcccatcacccccctgccccactactccgacatggac
acaccggagctcaagaacaagctcaacaggtttggtgttcggcctttaccgaagcgccag
atgatcctcaaattgaaggagattcaccagtacacccaccagctggtcagctccgaggag
gaggaggaggaagcggccccctcggcgagcagcgcagttcagacgaagcgcccgaccgcc
ggttcagacgttcctggcaacagaccggtctcttgcactcagagagtgaagtttaaagag
cccagaacgcccgctgacatctcccctctcaagcccgacagagaggaggaggaggagccg
ctgtcggcctcgcagggctccaacacctcttcaactgctgccagtgaagaatctgaaagc
aggtccaacccagagctgtgcctctccaccgactctgacagcgatggcggcatctctgct
tcccagacagcaaaccgcctccaggatctcctccgggcggtgcgctccttcatcctgtcc
gactccaaactgtacagccagatcctccagtaccagcctctcgtgttgtcccagctgcag
gagcgactgaaagcggccgggatccgcctgggtgctgccaagctggtggactacctggac
tcccagtgcatcaccttcaccacggccaagccgggctccgcgcccatccgccggcgggtc
aagaggacgggcaggggggcgaaggcagcgggcaggaaaagaccctga
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