Clinocottus analis (woolly sculpin): 137795394
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Entry
137795394 CDS
T10471
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04010
MAPK signaling pathway
cana04020
Calcium signaling pathway
cana04144
Endocytosis
cana04510
Focal adhesion
cana04518
Integrin signaling
cana04540
Gap junction
cana04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
137795394 (pdgfra)
04020 Calcium signaling pathway
137795394 (pdgfra)
09133 Signaling molecules and interaction
04518 Integrin signaling
137795394 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
137795394 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
137795394 (pdgfra)
04540 Gap junction
137795394 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
137795394 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
cana01001
]
137795394 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
cana04090
]
137795394 (pdgfra)
Enzymes [BR:
cana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
137795394 (pdgfra)
Protein kinases [BR:
cana01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
137795394 (pdgfra)
CD molecules [BR:
cana04090
]
Proteins
137795394 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
V-set
VEGFR-1-like_Ig-like
Motif
Other DBs
NCBI-GeneID:
137795394
NCBI-ProteinID:
XP_068448926
LinkDB
All DBs
Position
Unknown
AA seq
1474 aa
AA seq
DB search
MGVTSIMMDETKTCFLMGGMLLLLSVTSGLSPPTIVSNEEEFVLRPNSVFNISCTGKRNV
LWAEPLPANSFVLPGYYTATLFIYNATVENTAYYMCTYETPEGEPEEDNEAGIYVFVPDP
QAPFVPETPDNLLVPMDSMGVPISCRVSDPDTHVTLRSVPGGEEMLAYYDNKMGFFGSLA
PGRYRCETTVNGRTATSAVYTVEAEVLKDAQDSSLQDFSVQVRVSSELVRAGRPFNVSCV
APAGLNFQQQWLHPKTQAVDAVQMKQTLVDRVVYTLGVARAAPQDSGAYECSIAEEVSGE
VRVGSAAVTVFEENSFVALDHSGILTTEFVSLLEETEFTVLIEASPAPKVSWLKDGKDLS
QSYYVLAKTSRLEGNRYQSVLTLRQPLGKDDGNYTIRALSGEREAQFSFNLRVKAPTFGM
FPPSSAPELLPAVEELVVPLHSAFTLTCRGAGRLAWHTPLAAREQAREDNSGLSVTTVAV
DNATAAHTGYYACSYSRNATEEAEESSVYVYVPDPDVPFVPSLVPFGNHVLSDHEDMEIQ
CRVSDPSANVTLLNVDTQRPVASEYDSRRGALGVFTAGTYVCRADVNGEEHYSGEYIVHG
WAGAALHVELTAERTALLVGDSLTVTCLARGSEILEDHWKYPGKLVNRGIKTVQENKRAQ
EIRYTLTIPQASAKDSGIYSCSITDIISNESQTKELAVRVFASEFMSVWPEFSEYESAEL
DEVREFRAEISSFPGASVTWLKDGVPLSDVTAEISTSLRKLSETSYTGVLTLIRAKEEDS
GNYTMRVENGDQRRDVGMILEVKVPAVILDLMDIHHGAAAGQAVVCVSRGRPTPLVEWFV
CRNIKHCANDSASWAPLPANSTEVTLESHLDEDDNLESQVLFGHLESTLAVRCTARNMMG
AASREVKLVSNGPHPELTVAAAVLVLLVIVIISLIVLVVIWKQKPRYEIRWRVIESVSPD
GHEYIYVDPMQLPYDSRWEFPRDRLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAAKM
LKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHK
NRETFLSLNPEKSKKEVDIFGINPADESSRSYVILSFESKADYMDMKQSDNTQYVPMLEM
SDPSKYSDIQRSEYDHPPSQKEDEMDELMDDMNEGLSTTDLLSFTFQVAKGMEFLASKNC
VHRDLAARNVLLSQGKIVKICDFGLARDIMHDNNYVSKGSTFLPVKWMAPESIFDNMYTS
LSDVWSYGILLWEIFSLGGTPYPGMTVDSSFYNKIKSGYRMSKPELAPDDVYEMMMKCWN
SEPEKRPTFLSLSDSVSSLLPSSYKRHYERVNREFLKSDHPAVTRVVAENDDAYIGIGGK
DPAGKLKDRESGFDEQRLSSDSGYIIPLPDLDPMSDDEYGKRNRHGSETSEESAIESGSS
SSTYAKREGETLEDITLLDEMCLDCSDLGEDSFL
NT seq
4425 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtaacgtccatcatgatggacgagacaaagacgtgtttccttatgggaggaatg
ctgctgctgctctcagtcacttccggtttgtcgccgccgaccatcgtgtccaacgaagaa
gagttcgtgctgcggccgaactccgtgttcaacatcagctgcaccggcaagaggaacgtg
ctgtgggcggagccgctgccggccaacagcttcgtgctgccgggctactacacggccacg
ctgttcatctacaacgccaccgtggagaacaccgcctactacatgtgcacctacgagacc
ccggagggcgagccggaagaggacaacgaggcggggatatacgtcttcgtcccggatccc
caggctccgttcgtccccgagacccccgacaacttgctggtccccatggactctatgggg
gtccccatctcctgccgggtgtcggaccccgacacccacgtcaccctgaggagcgtcccc
ggcggagaggagatgctcgcctattacgacaacaagatgggcttcttcggaagcctcgcg
cccggccggtaccggtgcgagaccacggtgaacggccggaccgccacgagcgccgtctac
accgtggaggccgaggtcctgaaggacgctcaggactcgtctctgcaggacttctcggtg
caggtgcgggtcagcagcgagctggtgcgagccggccggcccttcaacgtctcgtgcgtc
gctcccgccggactcaacttccagcagcagtggcttcaccccaagactcaggcggtggac
gcggtccagatgaagcagactcttgtggaccgggtcgtctacacgctcggcgtcgcgcgg
gccgctcctcaggacagcggcgcctacgagtgctccatcgccgaggaggtcagcggcgag
gtcagggtcggcagcgcggccgtcaccgtcttcgaggagaactccttcgtggcgctggac
cacagcgggattctaaccaccgagttcgtgagcctcctggaggagacggagttcaccgtc
ctcatcgaggcctcgccggcccccaaagtctcctggctgaaagacggcaaagacttgtct
cagagctactacgtcctcgccaaaaccagccgcctggagggcaaccggtatcaaagcgtt
ctgacgctgcgtcagccgctcgggaaagacgacgggaattacaccatcagagctctgagc
ggagaacgagaggctcagttctccttcaacctcagagtgaaagcccccacctttgggatg
ttccctccctcctccgcccccgagctgctgccggcggtggaggagctggtggtgccgctg
cactcggcgttcacgctgacgtgccgcggcgccggccggctggcctggcacacgccgctc
gccgctcgcgagcaggcgcgcgaggacaacagcggcctgtccgtcaccaccgtcgccgtg
gacaacgccacggcggcgcacaccggctactacgcctgctcctacagccggaacgccacg
gaggaggcggaggagagcagcgtctacgtctacgtgccagatccggacgtccccttcgtt
ccgtctctggttccgttcggtaaccacgtcctctcggaccacgaggacatggagatccag
tgccgggtgtccgatcccagcgccaacgtgacgctgctgaacgtggacacgcagcggccg
gtggccagcgagtacgacagcaggagaggagcgctgggcgtgttcaccgccggcacgtac
gtctgccgggccgacgtcaacggagaggagcactacagcggggagtacatcgtgcacggc
tgggcaggcgccgcgctgcacgtggagctgacggccgagcgcaccgctctgctggtgggc
gacagcctcaccgtcacctgtctggcccgggggtccgagatcctggaggaccactggaag
tacccggggaagctggtgaaccgcggcatcaaaaccgtgcaggagaacaagcgggcccag
gagatccgctacacgctgaccatcccgcaggcctcggccaaggacagcggcatctactcg
tgctccatcactgacatcatcagcaacgagagccagaccaaggagctggccgtccgggtc
ttcgcgagcgagttcatgtccgtctggcccgagttcagcgagtacgagtcggcggagctg
gacgaggtccgggagttccgggccgagatcagctcgttccccggcgccagcgtcacgtgg
ctcaaagacggcgtcccgctcagcgacgtgacggcggagatctccaccagcctgcggaaa
ctcagcgagaccagctacacgggggttctcactctgatccgggcgaaggaggaggacagc
gggaactacaccatgcgggtggagaacggagaccaacgacgcgacgtcgggatgatcctc
gaggtcaaagtgccggcagtcattctggacctgatggacatccaccacggcgccgctgcc
ggccaggccgtggtgtgcgtctccagaggtcggcccacgccgctggtggagtggttcgtc
tgcaggaacatcaaacattgtgccaacgactcggcctcctgggcgccgctgcccgccaac
tccaccgaggtcacgctggagtcgcacctggacgaggacgacaacctggagagccaggtg
ctgttcggccacctggagagcacgctggcggtgcgctgcacggccaggaacatgatggga
gccgccagcagggaggtgaagctggtgtccaacggtcctcatccagagctgaccgtggcg
gccgccgtgctggtgctgctggtcattgtcatcatctcactcattgtcttggttgttatc
tggaaacagaagccgcgctacgagatccgctggcgggtcatcgagtccgtgagcccggac
ggccacgagtacatctacgtggaccccatgcagctgccctacgactccagatgggagttc
ccccgggaccggctggtgctcggtcgcatcctgggctccggggccttcgggaaggtggtg
gagggaaccgcctacgggctgagccgctcccaacccgtcatgaaggtggcggcgaagatg
ctgaaacccacggcgcgctccagcgagaagcaggcgctgatgtccgagctgaagatcatg
actcacctgggaccgcacctgaacatcgtcaacctcctgggggcgtgcaccaaatcaggg
cccatctacatcatcacggagtactgtttctacggcgacctggtcaactacctgcacaag
aaccgggaaactttcctgagcctgaacccggagaagagcaagaaggaggtggacatcttc
gggatcaaccctgcagacgagagcagcaggagctacgtcatcctgtccttcgagagcaaa
gcggactacatggacatgaagcagagcgacaacacgcagtacgtccccatgctggagatg
agcgacccctccaagtactccgacatccagcggtccgagtacgaccacccgccctctcag
aaagaggacgagatggacgagctgatggacgacatgaacgagggcctcagcaccaccgac
ctgctcagcttcaccttccaggtggccaaagggatggagttcctggcctccaagaactgt
gtgcatcgcgacctcgccgccaggaacgtgctcctctctcagggcaagatcgtgaagatc
tgcgacttcggcctcgcccgagacatcatgcacgacaacaactacgtctccaaagggagt
accttcctgcccgtgaagtggatggcgccagagagtattttcgacaacatgtacaccagc
ctgagcgacgtctggtcgtacggcatcctgctctgggagatcttctccttaggtgggacc
ccgtacccgggcatgacggtggattcgagcttctacaacaagatcaagagcggctacagg
atgtccaaaccggagctggcgcccgatgacgtgtacgagatgatgatgaagtgctggaac
agcgagccggagaagaggcccacgttcctgagtctgagcgacagcgtgtcgtctctgctg
ccctccagctacaagaggcattacgagcgggtgaaccgcgagttcctgaagagcgaccac
ccggcggtgacccgggtggtcgccgaaaacgacgacgcctacatcggcatcggcggcaag
gacccggcgggcaagctgaaggaccgggagagcggcttcgacgagcagcggctgagctcc
gacagcggctacatcatcccgctgcccgacctcgaccccatgagcgacgacgagtacggg
aagaggaaccggcacggctccgagacgtctgaggagagcgccatcgagtcgggctccagc
agctccacttatgcgaagcgcgagggcgagactctggaggacatcacgctgctggacgag
atgtgtctggactgcagtgacctcggggaggacagcttcctgtga
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integrated database retrieval system
