Clinocottus analis (woolly sculpin): 137796822
Help
Entry
137796822 CDS
T10471
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cana04121
]
137796822 (pdzrn3b)
Enzymes [BR:
cana01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
137796822 (pdzrn3b)
Ubiquitin system [BR:
cana04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
137796822 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
Sina_ZnF
PDZ_Tricorn
zf-rbx1
zf-TRAF
zf-RING_6
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
137796822
NCBI-ProteinID:
XP_068451085
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRVS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVRLQHLAEHAEMCDYAPAKCRNRGCGDVL
NLGDVDAHMRETCDCRPVGTCESGCGLTLTHREQRSNGHCCLRALKAHNGALQCRVISLD
REFKKQTIKANKREKSLLAQLSAVHGELQMTALKYQKKFTEYSERIDSLTKTVAFSCKEG
QTQSATVLLLREGGSLGFNIVGGRPCADDSDSTSNEGIFVSKVIEEGPADKEEGLQIHDR
IMEVNGKDLSKATHDQAVEAFRTAKEPIVVQVLRRAPHPKGVGPAGDAHVSDISTQTDIT
LQHIMALTKLSPSSPTMTELEEYLLPEEHPPHAYFDPNDFLEVMQQDIEREELEYEEVDL
YRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGIEIQNRE
DAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTASM
LQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLGS
CRKLTYSQDTLGSADLPFGGESFTSVDYADADFLGIPADECERFRELLELKCQMRNSVSN
QGLYYQGGGAGGQDQEGVDKELEMLNEELRTIELECLNIVRAHKMQQLREQCRESWMLHD
GGFRNYNTSSDAGRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
EHQGPAGAAGANGSNGRVLKPLLSPVQEARVPSRSRGSAKEAEGALQPEGKERKPHSPYK
HAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPGGELEPKMEWKVKIRSDGTR
YITKRPVRDKLLRERALRIHAERSGMTTDDDAISELKMGRYWSKEERKQHAVRSKEQRQR
REFMKQSRADCLKEQSGPEDRKEPNIIELSHKKMNKKRNKKIFDNWMTIQELLTHGTKSP
DGTRVYNSLLSVTTV
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaagggcaccgtggacccggacttcaaatgcaacttg
tgcaataaagtcctggaggacccgctgacgactccgtgcggccacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcaaagcagctgccccgtcaaatgtcagcgggtctcc
gccaaggagctgaaccacgtcctgcccctgaagaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgcggggctgcgatgccgtggtgaggctgcagcatctggccgagcac
gccgagatgtgcgactacgcgccggccaagtgcaggaaccgaggctgcggagacgtgctc
aacctcggggacgtggacgcgcacatgcgggagacgtgcgactgccgcccggtggggacc
tgtgagagcggctgcggcttgacgctcacccaccgggagcagaggtccaacggccactgc
tgcctgcgagccctgaaggcgcacaacggcgcgctgcagtgcagagtcatcagcctggac
cgggagttcaagaagcagaccattaaagccaacaagcgggagaagtctctcctggcgcaa
ctttccgccgtgcacggcgagctgcagatgacagctctgaaataccagaagaaattcacc
gagtacagcgagaggatcgactccctcactaaaaccgtggcgttttcctgcaaggaaggc
cagactcaaagcgcgacggtcctccttcttcgtgagggcggatctctgggttttaacatc
gtaggaggaaggccatgcgcggacgacagcgacagcacttcgaatgaggggatctttgta
tccaaggtcatcgaggaaggtccggcggacaaggaagagggccttcaaatccatgacaga
ataatggaggtcaatggcaaggacctctccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcgtggtccaggttctgcgccgcgccccgcatcccaaa
ggggtcggcccggcaggggacgcccatgtctcggacatcagcacgcagaccgacatcacc
ctccagcacatcatggccctgacgaagctgtccccctcctcacccaccatgacggagctg
gaggagtatctgctcccggaggagcatcctccacatgcatactttgaccccaacgacttc
ctggaggtcatgcagcaggacattgagcgcgaggagctggaatatgaggaagtggattta
taccgagccaacatccaagacaagctcggcctgacgatctgttacaggactgatgatgag
gacgaggctgggatctacattagtgagattgatcccaacagcattgccgcgaaggacggc
agaatcagagaaggggacaaaatcattcagatcaatggcattgagatccagaaccgggag
gatgctgtagcgctgctgaccagcgaggggaaccagaacatctctctgctggtggccaga
ccagagatccagctggacgagggctggatggatgatgacaggaacgacttcctggatgac
ctccacatggacatgctggagcagcagcaccatcaggccatgcagttcaccgccagcatg
ctgcagcagaagaagcacgaggaggacgggggcaccacggacacggccacgctgctgtcc
aaccaccacgagaaggacagcggcgtcggtcgcacggacgagagcacgcggaacgacgag
agctcggagcaggagaacctcggcgacgaccagaccacggcctccaacacgctgggcagc
tgccgaaagctcacctacagccaggacaccctcggcagcgccgacctgccctttggcggc
gagtcgttcacctccgtggactacgcggacgccgacttccttggcatcccggccgacgag
tgcgagcgcttccgggaactcctggagctgaagtgccagatgcggaacagcgtctctaac
cagggtctctactaccagggcggcggggccgggggtcaggaccaagagggcgtggacaag
gagctggagatgctgaacgaggagctgcgcaccatcgagctggagtgcttgaacatcgtg
cgcgcgcacaagatgcagcagctgagggagcagtgccgcgagtcctggatgctccacgac
ggcggcttccgcaactacaacaccagcagcgacgcgggccgccacgagctctccgacatc
acggagctgccggagaaatcggacaaagacagctccagcgcgtacaacacgggcgagagc
tgccgcagcacgccgctcacgctggagctgtctccggacaactcgctccggcggggagcg
gagcaccagggtccggccggagcggcgggcgccaacggctccaacggcagggtcctcaaa
cctctcctgtcccccgtccaggaagcccgtgtccccagccggagccgaggctccgccaag
gaggcggagggagcgctgcagccagagggcaaggagcggaagccgcattcgccgtacaag
cacgcccacatccccgcccacgcccagcactaccagagctacatgcagctgatccagcag
aagtccgccgtggagtacgcccagagccagatgagcctggtcagcatgtgccgagacccc
ggcggcgagctggagcccaagatggagtggaaggtgaagatccgcagcgacggcacgcgc
tacatcaccaagcggccggtgcgggacaagctgctgagggagcgcgccctgcgcatccac
gcggagcgcagcggcatgaccaccgacgacgacgccatcagcgagctgaagatgggccgc
tactggagcaaggaggagaggaagcagcacgccgttcgctccaaagagcagaggcagcgc
cgcgagttcatgaagcagagccgggcggactgtctgaaggagcagtcgggcccggaggac
aggaaggagcccaacatcatcgaactcagccacaaaaagatgaataaaaagagaaataag
aaaatatttgacaactggatgaccatccaggaactgctgacccacggtaccaagtcccca
gacggcacgagggtttacaactcactcctgtcggtgaccacagtgtga
DBGET
integrated database retrieval system
