KEGG   Clinocottus analis (woolly sculpin): 137798335
Entry
137798335         CDS       T10471                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cana  Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:cana00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cana03041]
    137798335 (smu1a)
Spliceosome [BR:cana03041]
 Complex B
  Other components
   Complex B specific factors
    137798335 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_ACSF4 NBCH_WD40 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Nup120_160 Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_IFT140_1st Beta-prop_EIPR1 Beta-prop_BBS7 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_IP5PC_F VPS8_N PROPPIN WD_LRWD1 LisH zf_topless DUF7165 LisH_PAC1
Other DBs
NCBI-GeneID: 137798335
NCBI-ProteinID: XP_068451533
LinkDB
Position
Unknown
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLQRTLVTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQNQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLSRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDSSQLLSASFDQIIRVHGLKSGKTLKEFRGHTSFVNEAAFTPD
GHHVISASSDGTVKMWNMKTTECSNTFKPLGTSAGTDITVNNVIQLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLISTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctctggaggtggaatccgcagacgtgatccgtctgattatgcagtacttgaaggaa
aacaacctgcagaggaccctcgtcaccctgcaggaggagaccaccgtgtccctgaacacc
gtggacagcatcgagagcttcgtggctgacatcaacagcggccactgggacaccgtcctg
caggccatccagtccctcaagctgccggataagactctgatagacctgtatgaacaggtg
gtgttggagctgatcgagctgagagagttgggtgcagcccgttcgctcctcaggcagacc
gaccccatgatcatgctgaaacagaaccagccggagaggtacatccacctggagaacctg
ctggctcgctcttactttgatcccagagaggcgtacccggacggcagcagtaaggagaag
cgccgggcggccatcgcccaagccctggcaggggaggtcagtgtggtgccgccctcccgt
ctcatggctctgctgggacagtctctgaagtggcagcagcatcaaggcctcctgcctcct
ggtatgactattgatctgttcaggggcaaagctgccgttaaagatgtggaggaggagcgc
ttccccacccagctgagcaggcacatcaagttcggacagaaatctcacgtggagtgttcc
cgattctcccccgatggtcagtacctggtcaccggctcggtggacggcttcatcgaggtc
tggaatttcaccaccggcaagatccgaaaggatctgaagtaccaggcccaggacaacttt
atgatgatggacgatgcggtactgtgtatgggcttcagtcgagacacggagatgttggcc
acgggtgcccaggacggaaagatcaaggtgtggaagatccagagcggtcagtgtctgagg
cggtttgagcgcgcccacagtaaaggagtaacttgcgtgagtttctgtaaagacagcagc
cagctcctcagtgcctccttcgaccagataatccgagtccacggactgaagtcgggtaaa
actctcaaggagttccgcggccacacctcctttgtgaacgaggccgcgtttactccggac
ggccatcacgtcatcagcgcctcctcggacggcacggtcaagatgtggaacatgaagacc
acagagtgctccaacaccttcaagcctctgggcacgtcagccggcaccgacatcactgtc
aacaacgtcatccagctgcccaagaaccccgagcactttgtggtgtgcaaccgctccaac
acggtggtcatcatgaacatgcaggggcagatcgtgaggagtttcagctccggtaagagg
gaaggcggcgactttgtgtgctgcaccctgtcgccccgcggcgagtggatttactgtgtg
ggcgaggactttgtgctctactgcttcagcactgtcactggcaagctggagagaacgctg
acggtccacgagaaggatgtgatcggaatcgcccaccacccgcaccagaacctcatcagc
acctacagtgaggacggcctgctgaagctctggaagccttga

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