Clinocottus analis (woolly sculpin): 137800581
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Entry
137800581 CDS
T10471
Symbol
prpf6
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137800581 (prpf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137800581 (prpf6)
Spliceosome [BR:
cana03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137800581 (prpf6)
Complex C
U5 SnRNP specific factors
137800581 (prpf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
HAT_Syf1_CNRKL1_C
TPR_17
TPR_8
TPR_1
FAT
ARM_TT21_C
T7SS_EccA1_N
TPR_21
ARM_TT21_5th
Mt_ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
137800581
NCBI-ProteinID:
XP_068453938
LinkDB
All DBs
Position
Unknown
AA seq
964 aa
AA seq
DB search
MANSGARQGPKLVNRSAAGGGGAAGAGGGGPPAMPLASPLMGKKKKPFLGMPAPLGYVPG
LGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNEDEEEDLNDTNYDEFNG
YAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERRELREKEEIEKYRMERPKIQQQFS
DLKRKLSEVSEEEWLSIPEVGDARNKRQRNPRYEKLTPVPDSFFSKHLQTGEKNTTVDPL
QGLGGLSTPYPGSMTPGTGELDMRKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDL
NSMIPTHGGDISDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTE
MCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKAL
ENVSKSVRLWKTAVELEEPEDARIMLSRAVECCPTSVELWLALARLETYENARRVLNKAR
ENIPTDRHIWITAAKLEEANLNVQMVDKIIDRAITSLRANGVEINREQWIQDAEECDKAG
SVATCQAVIRAVIGIGIEEEDRKHTWMEDSDSCVSHGALECARAIYAHSLQVFPSKKSVW
LRAAYFEKNNGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAEDVPAARSILALAFQA
NPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLKNIDAAHEL
CTEALKHYEDFPKLWMMRGQIEEQGENMDKAREAYNQGLKKCPHSSGLWLLLSRLEERVG
QLTRARAILEKARLKNPQIPELWLESVRLEFRAGLKNISNTLMAKALQECPNSGILWAEA
VFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKISKAREWFLRTVKIEPDLGDA
WALFYKFELQHGAEEQQEEVRKRCENAEPRHGELWCAESKHVLNWQKKTGEILAGVAGKI
KNTF
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atggctaactctggagcaagacagggacctaaactcgtcaacaggtcggcggcgggaggt
ggcggggccgcgggggccggcggcggaggccccccggcaatgcctctcgcctccccgctc
atggggaagaagaagaagccgttcctggggatgcccgcgccgctaggctacgtcccgggt
ctgggtcgaggtgcaactggtttcaccacacgatccgatatcggtccggcccgcgacgcc
aacgacccggtggacgaccgccatgcgccgccagggaaaaggacggtgggggaccaaatg
aagaagaacgaggatgaggaagaagatctgaacgacacaaattacgacgagttcaatgga
tatgcaggtagcttgttctccagtgggccctatgagaaagatgatgaagaagcagatgct
atatatgcggcactggacaagaggatggatgaaaggcgcaaagaaagaagggagctgaga
gaaaaggaagaaatcgagaaataccgtatggagcgtcccaaaatccagcagcagttttca
gatctaaagagaaagttgtcggaggtgtcggaggaggagtggctgagcatccccgaggtg
ggagatgcccggaataaacggcagagaaatccccgctacgagaaactcaccccggtgccc
gacagcttcttctccaaacacctgcagaccggagagaaaaacaccaccgtcgaccctctg
caagggctgggaggtctgagcacaccgtacccaggaagcatgacacccgggacgggagag
ctggacatgaggaaaatcggtcaggccaggaacacactcatggacatgaggctcagccag
gtgtccgactccgtgagcggacagacggtggtggaccccaaaggttacctgacggatctc
aactccatgatccccacacacggcggagacatcagcgacatcaagaaggctcgtctgctg
ctgaagtccgtgagggagacaaatcctcatcacccgccggcctggatcgcctctgccagg
ctggaggaggtcaccggaaagctgcaggtggcgaggaacctgatcatgaaaggcaccgag
atgtgtcctaagagcgaggacgtgtggctggaggccgcccggctgcagcccggcgacacg
gccaaggccgtggtggcccaggccgtccgccacctgccgcagtccgtccgcatctacatc
agagccgcggagctggagacggacatcagggccaagaaacgagtcctcaggaaggccctg
gagaacgtgtccaagtccgttcgactgtggaagacggccgtggagctggaggagccggag
gacgcccggatcatgctgagcagagccgtggagtgttgcccgacgagcgtggagctgtgg
ctggcgctggcccggttggagacgtacgagaacgcccggcgcgtcctgaacaaagctcgg
gagaacatccccacagaccgccacatctggatcacggccgctaagctggaagaggccaac
ctcaacgtccagatggtggacaagatcatcgacagggccatcacgtcgctgcgcgccaac
ggcgtggagatcaaccgggagcagtggatacaggacgcagaagagtgcgacaaagccggc
agcgtggcgacctgccaggccgtgatcagagccgtcatcgggatcggcatcgaggaggag
gatcgcaaacacacatggatggaggattcagatagttgcgtgtcccacggagcgctggag
tgtgcgcgggccatctacgcccactccctgcaggtgttccccagcaagaagagcgtctgg
ctcagagcggcctactttgagaagaacaacggcaccagggagtctttggaggctctgctc
cagagggccgtggctcactgtcccaaagcggaggtcctgtggctgatgggggccaagtcc
aagtggctggctgaggacgtccccgccgccagaagcatcctggctctggccttccaggct
aaccccaacagcgaggagatctggctggctgccgtcaagctggagtctgagaacaacgag
tacgaaagagcccgtcgactgctggccaaggcccgcagcagcgccccgacagccagggtg
ttcatgaagtctgtgaagctggagtgggttctgaagaacatcgacgccgcccacgagttg
tgcaccgaggccctgaagcactacgaggacttccccaagctgtggatgatgagaggccag
atagaggagcagggggagaacatggacaaggcccgagaggcctacaaccaagggttgaag
aagtgtccccactccagcgggctgtggctgctgctgtcccggctggaggagcgcgtgggt
cagctgaccagagccagagccatcctggagaaggctcgcctcaagaacccgcagatccca
gagctgtggctggagtcggtcaggctggagttccgggccggactgaagaacatctccaac
accctgatggccaaagcgctgcaggagtgccccaactcaggcatcctgtgggcggaggcg
gtgttcctggaggcgcggccccagaggaagaccaagagcgtggacgctttgaagaagtgt
gaacacgacccccacgtcctgctcgctgtggccaagttgttctggagcgagcgtaagatc
agcaaagccagagagtggttcctccggacggtgaagatcgagccggacctgggagacgcc
tgggctctgttctacaagtttgagctgcagcacggcgcagaggagcaacaggaagaggtg
cgaaagcgctgcgagaacgcggagcctcggcacggagagctttggtgcgccgagtccaaa
cacgtcctgaactggcagaagaagacgggagagatcttggcgggcgtcgccggcaagatc
aagaacacgttctga
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