Clinocottus analis (woolly sculpin): 137800963
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Entry
137800963 CDS
T10471
Symbol
ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
cana Clinocottus analis (woolly sculpin)
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137800963 (ddx20)
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137800963 (ddx20)
Spliceosome [BR:
cana03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
137800963 (ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-GeneID:
137800963
NCBI-ProteinID:
XP_068454437
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MAASVKKAAHDIEARERTDDVLLPEGVDFRALLLSRPVLDGLASAGFRKPSPIQLKAIPL
GRCGLDLIVQAKSGTGKTCVFCTVALDSLVLENPATQVLVLAPTREIAVQIHSVLMAIGC
AMEGLQCSVFIGGRPVSQDKTSLKKCHVAVGSPGRIKQLIELGALSTAGVRLLVLDEADK
LLEEGSFQDQINWIFSSLPVNKQMLALSATYPESLAQHLTRYMREPTFVRLNPSDMGLKG
LKQYYKLVQSHPVPHKIFQEKVQHLLELFSKIPFNQALVFSNLHTRAQHLADVLSSKGLP
AACISGGLSQDQRLEAMSKLKQYQCRVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMH
RIGRAGRFGTQGLAVTYCCHGEEENKMMAIAQKCGVSLSTLPSAIEPGLMDEPCDWDVCT
TASSRQLSSRTKKKQQRDADRPTAPGGQRSPEETVPTAGPEQRPAAPAEDALPPPRPPAA
ATRKDLQDALPKIPPLCSFKSRAASFVAFEEAERDFRGFITAGPGRSVEVIREFRGGEDG
DPSGRHRESFMLHDHDGGECLTLKGGRWEAESSPRREVPGSSNSQTDDEGESSRTGGVDY
GQTAAAPEPQADAAGSKAFAPPAPDMCRRTSCASRGRAPPPPPERREPRPGNEPSGRGSR
KMTEKSSEQRKVREEEEEEEESAEAYWRASYRAWNDYYASVTPFQERGQQSYYSAAHSWM
AAYRMNAVYMHELLKH
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctccgtgaagaaggctgcccacgacatagaggcgcgcgagcggaccgacgac
gtgcttctcccggagggagtggacttccgcgcgctgctgctctcgcggcccgttctggac
ggactcgcctccgcgggcttccggaagccttccccgatccagctgaaggcgatcccgctg
ggccgctgcgggctggacttgatcgtgcaggctaagtccggcacggggaagacgtgcgtg
ttctgcaccgtcgctctggactcgctggttctggagaatcctgcaactcaggttctggtc
ttggctcccacgcgtgagatcgcggtgcagatccactcggtgctgatggcgatcggctgt
gccatggagggtctgcagtgcagcgtgttcatcggcggccggccggtgagccaagacaag
accagcctgaagaagtgccacgtggcggtgggctctcctggccgcatcaagcagctgatc
gagctgggcgcattgtccaccgccggcgtccggctgctggttctggacgaggccgacaag
ctgctggaggagggaagcttccaggaccagatcaactggatcttctcctctctgccagtg
aacaaacagatgctcgctctgtctgccacctacccagaatcccttgctcagcacctcacc
cgctacatgcgagagcccactttcgtccgactcaatcccagcgacatgggcctcaaaggt
ctgaagcagtactacaagctggtgcagtctcatcctgtgcctcacaagatcttccaggag
aaagtgcagcacttgttggagcttttcagtaaaatcccattcaaccaggctctggtgttc
tccaacctccacaccagggctcagcacctggcagacgtcctgtcctccaaaggtctaccg
gctgcttgcatctcaggcggtctgagtcaggaccagaggctggaggccatgtccaagctg
aagcaataccagtgcagggtgctcatctccaccgacctgacctccagaggtatcgatgca
gagaaagtgaacttggtgataaacctggacgtgccgcaggactgggagacctacatgcac
cggatcggtcgcgccgggcgctttggcactcaggggctggcggtgacctactgttgccat
ggcgaggaggagaacaagatgatggccatcgctcagaagtgcggcgtgagtttgtccacg
ttgccgtccgccatcgagccgggcctgatggacgagccgtgtgactgggacgtctgcacc
acggcgtcttcacgccagctctcctcccggacgaagaagaagcagcagcgtgacgcggat
cggccgacggcgcccggcggtcaaaggtcgccggaggagaccgtcccgacggccgggccg
gagcagagaccggcggctcccgccgaggacgctctgccgcctcctcgtcctccggcggcg
gcgactcgcaaagacctgcaggacgcgctgccaaagatcccgcccctctgctcgttcaag
agccgcgcggcgagcttcgtggccttcgaggaggctgagcgggacttccgcggcttcatc
accgcggggccgggcagatcggtggaggtcatcagggagttccgcggcggcgaggacggc
gacccgagcggccggcaccgagagtccttcatgctccacgaccacgacggaggtgaatgt
ttaacactcaagggaggacgctgggaagctgagtcttctcctcgcagggaggttcccggt
tcttcaaactctcaaacggatgacgagggagaatcgagtcggaccggaggcgtcgactac
ggacaaacggccgccgcgcccgaaccacaggcggacgccgccggctccaaagcttttgcg
cctcctgcgcctgacatgtgccgccggacgtcctgcgcgtcacgagggagagctccgcct
cctccaccagagagacgcgagccgaggcccggcaatgagccgagcggtcgtggatccaga
aagatgacggagaagtcttcagagcagaggaaggttagggaggaagaggaggaagaggag
gagagcgctgaggcttactggagagcgagctacagagcctggaacgattactacgcctcg
gtgactcctttccaagagcgagggcagcagagctactacagcgccgcccacagctggatg
gcagcgtaccgcatgaacgccgtctacatgcatgagctgctgaaacactga
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