Clinocottus analis (woolly sculpin): 137801339
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Entry
137801339 CDS
T10471
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03008
Ribosome biogenesis in eukaryotes
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
137801339 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
137801339 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137801339 (xrn2)
03019 Messenger RNA biogenesis [BR:
cana03019
]
137801339 (xrn2)
03009 Ribosome biogenesis [BR:
cana03009
]
137801339 (xrn2)
03016 Transfer RNA biogenesis [BR:
cana03016
]
137801339 (xrn2)
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
137801339 (xrn2)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
137801339 (xrn2)
Ribosome biogenesis [BR:
cana03009
]
Eukaryotic type
Pre-60S particles
RNases
137801339 (xrn2)
Transfer RNA biogenesis [BR:
cana03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
137801339 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
137801339
NCBI-ProteinID:
XP_068454827
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MGVPAFFRWLSRKYASIVVHCTEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYMDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKQRITEEILSRGGYVAPDEIKERFDSNCITPGTEFMDNLAQCLRYYVAE
RLSNDPGWKNITVLLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQVGHEMKECQGSPREKKGEHDEFAGSMPASEQE
FIFIRLCVLREYLARELAMASLPFPYDFERTIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGYVDLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KKKRMKAEQQRGPAHMTTGQFAPHALGRRDRPEAVQNARHQAADMRMQHNKDAAQSLKAS
LKNGGNASAGTSSGADNRGVKRKADDSDSEPEPEDDVRLWEDGWKQRYYKTKFDVDVEDE
DFRKKVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKELFTDFEKDTKPF
KPLEQLMGVFPAASGNFLPTTWRNLMSSPESSIIDFYPDDFAIDLNGKKYAWQGVALLPF
VDERRLRAALDEVYGDLSPEEERRNSLGSDVLFMQRSHPLADFIHELYRTESQEDTQIPA
ELCHGILGTLNLDDDPILPDKVVTSPIPVLRDITQNHAIGVKFRDPHFAADFVFKAVLLP
GAKMPDKVLKPGDWEKGNRPPWRPQLGFNPHRQQQHLDHSGFRALGHSVNRSRGGGGQYS
NAPPPSMYQQGGYRGGHQQSYHQSRSNSLLGAPPSFQQSQYPRQQQQQQQQQQQQQQQQQ
QYGGRGHGWDRAAQQQQSSYQQNASRGGGASGRGGGGYQQRFDGRRDEWRERRDDRRDNR
GQQHQGYSAGRGYPAPPPSRRYEWN
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgttggcttagcaggaaatatgcgtccatcgttgtccac
tgtaccgaggagaagggtaaagaatgtaacggcgttcgtattcctgtcgacacgaccaag
ccgaaccccaacgaagtggaatttgacaacttgtacttggacatgaacgggatcattcac
ccgtgtacacatccagaggacaaagctgcccccaaaaacgaagatgagatgatggtcgcc
atcttcgagtacatggaccgcctgtttaatatcgtgcggccccgcagagtcctctacatg
gccatcgacggagtggctccgcgggccaagatgaaccagcagcgctctcgccggtttcgt
gcctctaaggaaggcgttgagttagtggaggagaagcaacgcatcacggaggagatcctc
agcagaggaggttacgttgcacccgatgagattaaagagcggtttgacagcaactgcatc
actccaggaactgagttcatggacaacctggctcagtgtctacggtactacgtcgcagag
cgactcagcaatgatccgggatggaagaacatcacggtcttactgtctgatgccagcgtc
cccggggaaggagagcacaagatcatggactacatccggaggcagagagctcagccgaac
cacgaccccaacacacaccactgcctgtgcggcgccgacgctgacctcatcatgctcggc
ctggccacccacgagccgaacttcaccatcatccgagaggagttcaagcccaacaagccc
cgcccctgcgcgctctgcgggcaggtcggccacgaaatgaaagaatgtcagggctcgccg
cgagagaagaagggagagcacgatgagtttgccggctcgatgccggcgtccgagcaggag
ttcatcttcatccggctgtgtgtgctgcgggagtacctggccagagagctcgccatggcc
agcctgccgttcccctacgacttcgagaggaccatcgacgactgggtcttcatgtgcttc
ttcgtcggtaacgacttcctgcctcacctgccgtccctggagatcagagaaggagcgata
gatcggctggtcaacatctacaaagatgtcgtgcacaaaaccgggggctacctgacggag
aacggctatgtggacctggagcgggtggagctgatcatgcaggcggtgggcgtggccgag
gacaacatcttcaagaaacgcaaagaggacgacgaaggcttcaagagaagaatgaaagaa
aaaaaaaagaggatgaaggcggagcagcagcgaggccccgcccacatgaccacaggccag
ttcgcccctcatgcgctgggcaggagagaccgacccgaggccgtccagaacgcccggcat
caagccgccgacatgcggatgcagcacaacaaggatgctgctcagtccctgaaggcctcc
ctaaagaacggtggcaatgcgtctgcagggacgagcagcggcgcagacaacagaggcgtg
aagaggaaagccgacgacagcgacagcgagccggagcccgaagacgacgtcaggctgtgg
gaggacggctggaagcagagatactacaagaccaagttcgacgtggacgtggaagacgaa
gacttcaggaagaaggtggtgcgctcctacgtagagggactgtgctgggtgctgcgctac
tactaccagggctgcgcctcctggaagtggtacttcccgttccactacgcaccgttcgcc
tccgacttcaaagacatcaaagagctgttcacggactttgagaaggacacgaaaccgttc
aagcccctggagcagctgatgggagtgtttcccgccgccagcggcaacttcctgcccacg
acgtggaggaacctcatgagcagtccggagtcctccatcatcgacttctaccccgacgac
ttcgccatcgatctcaacggcaagaaatacgcctggcagggagtggccctgctgccgttt
gtggacgagcgccggctgcgggcggcgctggacgaagtgtacggcgacctctcaccggag
gaagagaggagaaacagtctgggcagtgacgtgctgttcatgcagaggtctcacccgctc
gccgacttcatccacgagctgtaccgcacggagtctcaggaggacacgcagatccctgca
gagctctgccacgggatcctcgggacgttgaacctggacgacgaccccatcctgccggac
aaggttgtgacctcgcccatcccggtgctgcgggacatcacacagaaccacgccatcggg
gtgaagttcagagatcctcactttgctgctgactttgtgttcaaagccgtcctccttcct
ggagccaagatgccagacaaggtgctgaagccgggcgactgggagaaaggaaaccgtcct
ccatggcgtcctcagctgggcttcaaccctcaccggcagcagcagcacctggaccacagc
ggcttcagggccctgggtcacagcgtgaacagaagccgaggaggaggaggacagtacagc
aacgcaccgccgcccagcatgtaccagcagggaggctacaggggaggccaccagcagagc
taccaccagtctcggtccaacagcttgctgggagctcctccctccttccagcagtcccag
tacccgaggcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcag
cagtacgggggtcgaggtcacggctgggatcgagccgctcagcagcagcagtcttcgtac
cagcagaacgccagccgagggggcggggcctccggccgcggcggcggcggctaccagcag
cgctttgatggccgccgggacgagtggagagagcgcagagacgaccgccgggacaaccgg
ggacaacagcaccagggctacagcgcaggccgaggttacccggctcctcctccgtcccgg
agatacgaatggaactga
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integrated database retrieval system
