Clinocottus analis (woolly sculpin): 137802250
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Entry
137802250 CDS
T10471
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04382
Cornified envelope formation
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04518
Integrin signaling
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137802250
04518 Integrin signaling
137802250
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137802250
09142 Cell motility
04820 Cytoskeleton in muscle cells
137802250
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137802250
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137802250
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137802250
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137802250
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137802250
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C4
Collagen
Motif
Other DBs
NCBI-GeneID:
137802250
NCBI-ProteinID:
XP_068456104
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MAQEVDQESLVFLVWMVSMGRRDHKDQKDLKENLFMVLRFQGFRGILVEMDSAGYLEDKE
SLGLKASRALLAFMGFRDWKDSKGEQGPPGPQGPEEVIEFPPDFLPPKGNKGEMGPPGQC
GPKGTKGPPGPTGYPGPPGFPGAQGLKGDPGLKGYEGPRGPHEYLVPKVTLVLLEQKGFQ
GLQAPQVLAFQALRGNLDLKVIRDFLAPQEFLDDQALQVKLRNAVLKRLDHPVQKERIPG
VPGRDGPPGAVGLLGPKGLKGDDRETGGIGLPGFNGDPGDPGPSGISLDGSSGLPGFPGL
PGRVLLAHPASLGLRGQGDAVEFLETKGFKVHKANLDDLVGKESQETMALQDLQETLDRG
EYQLDQEVPLVPQEILGPMAGQDRKVRAGTQVGPGPKVYLAALDLQDPEVNKEKEASMGV
QVTLDTQDSLVIKVSQDGLMENLVHLDPKDCRGRMDPVHPEEVQEIQGTLDCGEGQVCLD
NEAWSVIQEDKEEQVMSSRPGVPGFPGDSGGLGPPGPPGSYGPPGIPGPPGPYGFPGVKG
LQGQQGPPGAIFSGSKGQSGPPGATGLPGFPGEPGNPGKECSNPIPGPNGEIGYEGPPGP
PGPPGEPGPTGSSIYTQGDQGPIGLPGLPGRKGDGGLPGPPGPQSYPGFTGPKGATGPAG
SRGSQGPKGQIGVPGPWGRKGVTGPVGETGQKGPIGFVGLPGKPGPAGRTGPVGDPGDAG
QLGFAGPQGIPGPPGDPGSRGQGEASPSGFLLTIHSQSVQVPQCPEGSSRLWAGYSLVYL
EGQEKAHSQDLGQAGSCLPVFSTMPFSYCNKGACHYSSRNDKSYWLSTTAPIPMMPLSGL
EISSHISRCAVCETVSPAAAFHSQDHAVPACPAGWRSLWTGYSFLMHTGAGDEGGGQSLT
SSGSCLKDFRAHPFIECQGARGSCHYFANLYSFWLTAVIQTDQFTTQRPDTIKADDQQWR
KASQCHVCLREQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagaggtcgaccaggagtctttggtattcctggtctggatggtctccatgggc
cgccgggatcacaaggaccaaaaggatttaaaggagaacctttttatggtgcttcgcttc
cagggcttcagggggatcctggtagagatggacagcgcggggtacctggaagacaaggag
tcgttgggcctaaaggccagtcgggccctcctggccttcatgggattcagggattggaag
gactcaaagggggagcaggggccacctggcccacaaggaccagaagaagtcatagaattt
cctccagacttccttccccccaaaggcaacaagggagagatgggtcctcctggacaatgt
ggaccaaagggcacaaaaggcccccctggtccaactggttatccaggaccgccaggattc
cctggagctcaaggacttaaaggagacccagggctgaaaggatacgaggggccaagaggt
ccacatgagtacctggtcccaaaggttaccctggtgttgctggagcaaaagggtttccag
ggcttacaggccccccaggtcctggcgttccaggctctcaggggcaacctggacctaaag
gttatcagggacttcctggcccctcaggaattcctggacgaccaggccctccaggtgaaa
ctgaggaatgctgtcttgaagagattggatcacccggtccaaaaggagaggattccaggt
gtgccgggaagggatggtcctccaggtgctgtgggactgcttggtccaaaaggcctgaaa
ggagatgacagggaaactggtgggattggactgccaggtttcaatggagatccgggcgac
cctggtccgagtggaattagcctggatggctcttcaggacttcctgggttcccaggactt
ccaggccgggtgctcctggcccacccggcttccttggggctcaggggccaaggggacgcc
gtggaattcctggaaaccaagggtttcaaggtgcacaaggccaacctggacgacctggtt
ggaaaggagagccaggagacaatggccttgcaggacctccaggaaaccctggacagaggg
gagtaccagctggaccaagaggtcccgctggtccctcaggagatcttgggaccgatggct
ggtcaggacagaaaggtgagagcgggtacccaggtagggccggggccaaaggtttacctg
gccgccctggacctgcaggacccagaggtaaacaaggagaaagaggcttcgatgggcgtc
caggtgacgctggatacccaggacagcctggtaataaaggtgagccaggacggtcttatg
gagaacctggtccacctggacccaaaggattgccggggaaggatggacccagtgcaccca
gaggaagtccaggagatccaggggaccctggactgcggggaaggtcaggtctgcctggac
aacgaggcgtggtcggtgatccaggaagacaaggaggaacaggtgatgtccagtcgtcca
ggtgttccaggttttccaggcgattctggaggtctgggaccccccggcccaccgggctca
tatgggcctccaggtatacctggccctccaggaccgtatggttttcctggagtcaaaggt
cttcagggtcagcaagggcctccaggagccattttttctgggtccaagggtcagagcggc
ccacccggtgccacaggtcttccaggcttcccaggtgaacctggtaaccctggcaaagaa
tgctccaatcctattccaggacccaacggagagataggatatgaaggacctccaggaccc
ccaggtcctcctggggagccaggccctacaggaagcagtatttacacccaaggagaccaa
ggcccaattggcctcccggggttaccaggtcgtaagggagacgggggccttccagggccc
cctggacctcagagctacccaggctttacaggaccaaaaggcgcgacaggtcctgctggt
tctcgaggttcccagggacccaaaggtcagatcggggtccctggcccttggggccgcaag
ggagtgaccggcccagttggagagacaggacagaagggccccatagggtttgtgggcctc
cctggtaaaccaggtcctgccggccgtactggtcctgttggagacccgggggatgctggt
cagctgggatttgctggacctcaaggtatcccaggtccacctggtgatccaggtagccga
ggccagggggaggcgtcaccgtcaggcttcctcttgacgatccacagccagtcagttcag
gtgccgcagtgccctgaagggagcagtcggctctgggcgggctacagtctggtctacctg
gagggacaagagaaggcccactctcaagatctgggccaggctggctcctgcctccctgtt
ttctccaccatgccgttctcctactgcaacaaaggtgcctgtcactactcgagccgcaac
gacaaatcctactggctctccaccaccgctcccatacccatgatgcccctatcaggcctg
gagattagctcccacatcagccgctgtgcggtgtgtgagacggtgtcgcctgcagcggct
tttcacagccaggatcacgctgtgcctgcatgcccggccggctggaggagtctgtggacc
ggctactctttcctcatgcacacgggggcaggcgacgagggtggtggccagtctctgact
tcttctgggagctgcctgaaggatttccgcgctcaccccttcatcgagtgccagggtgcg
cgcggctcttgccactactttgccaacctctacagtttttggctcaccgccgtcattcag
acggatcagttcaccactcagaggccggacaccatcaaggcagacgaccagcagtggcgc
aaagccagccagtgtcacgtctgcctccgagaacaatga
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