Clinocottus analis (woolly sculpin): 137802577
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Entry
137802577 CDS
T10471
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03030
DNA replication
cana03420
Nucleotide excision repair
cana03430
Mismatch repair
cana03440
Homologous recombination
cana03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
137802577
03420 Nucleotide excision repair
137802577
03430 Mismatch repair
137802577
03440 Homologous recombination
137802577
03460 Fanconi anemia pathway
137802577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cana03000
]
137802577
03032 DNA replication proteins [BR:
cana03032
]
137802577
03400 DNA repair and recombination proteins [BR:
cana03400
]
137802577
Transcription factors [BR:
cana03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
137802577
DNA replication proteins [BR:
cana03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
137802577
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
137802577
MMR (mismatch excision repair)
137802577
DSBR (double strand breaks repair)
HR (homologous recombination)
137802577
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
SOG2
Motif
Other DBs
NCBI-GeneID:
137802577
NCBI-ProteinID:
XP_068456649
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MSVKLTEGAVEALINGSQADCNLVLQLLNIVPCAGGSVPPRFRLMMSDGRHSLSSFLLAT
QLNNLVEEKLLVRNCVCMVKKTIKNTLSDGRPVVIVLDMEILQSAEEIGGKIGNPTPCNP
TGKTSSPQKSASGSSVPASPPSAAVAGPSYENNSTLSPSRGREKGFVGTSPMKASPMKAS
PMKASPTKASPKVTSTSPGSSSKVVPIESLNPYQSKWTIKARVTNKSSIRTWSNSRGEGK
LFSFEILDESGGEIKITAFNNEVDKFFSLVEQGKVYFITKATLKVANKQYTSLKNDYEMT
LHAQSSIVPCDDSQDIPAVHCDFVPIAELENRDKDAIIDVIGVCKSVEDVSRITTKTSRE
VSKRALNLIDTTGKEVTATLWGEEAEKFDGSRQPVVAIKGARLSDFGGRSLSALFSSTVM
VNPDLPEAFRLRAWYDQGGNAIKGKSLTETRSSGSGARTNWKTLSDVKNEELGQGEKADY
FSCIATVLYIRKENCLYQACPSAGCSKKVIDQQNGLYRCEKCGREFPNFKYRLLLSANLA
DFGDNQWVTCFQDTAEVLLGHTAETLGQLRDTDETAFDEVFQKVNFTTHLFRNRVKLETY
NDESRVKVIVMEVQPVDHREYSRRLLSNIHKLTS
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaaaactcacggagggagcagttgaagcgctgatcaacggctcacaagcggac
tgcaatctcgtgctgcagctgctgaacatcgttccgtgtgccggcggttctgttccaccc
aggttccggctcatgatgagtgatggtcggcactctttgtcttccttcctgttggccaca
caattaaacaatctggtagaagagaaactcctggtccgtaactgtgtgtgtatggtgaag
aagacaatcaagaacacgttgtcagatggcaggcccgtggtgatcgtgctggacatggag
attttgcaatcggccgaggaaattggagggaagatcggaaatcccactccatgtaatcca
actggtaagacttcatctccacagaagtctgcctcaggttcttctgtcccagcatcccct
ccgtctgctgcagtagctggaccctcctatgagaacaacagcaccctttcgccttcccga
ggccgtgaaaaaggttttgttggaacgtctcccatgaaggcgtctcccatgaaggcgtct
cccatgaaggcgtctcccacgaaggcgtctccaaaggtcaccagcacttctccaggttct
tcatcaaaagtggttcctattgaaagcctaaacccctaccaaagcaagtggactatcaaa
gccagagtcaccaacaaatccagtatccgcacctggagtaactctagaggagagggcaag
ctcttctcctttgagatattggatgaaagtggtggagaaatcaagatcacagccttcaac
aacgaagtggacaagtttttctctctagtggagcaaggcaaggtgtacttcatcacaaag
gcgacgctgaaggtggccaacaaacagtacacctcactgaagaacgactatgagatgacc
ctccatgctcagtcatctatcgtcccatgcgatgacagtcaagacatcccagctgtgcat
tgtgactttgtgcccatcgctgagctggagaacagagacaaggacgccatcattgatgtg
attggagtgtgtaagagtgtggaggatgtatcccgtatcaccactaagaccagcagggaa
gtctcaaagagggccctgaacctaatagacacaactggcaaagaggttacagccacactg
tggggagaggaggccgagaagtttgacggctctcggcagccagtggtcgccatcaaagga
gctcgcttgtctgattttggaggcagatctctctctgctttattcagttcaacagtcatg
gtcaacccagacttaccggaggcgtttcgtctgcgggcctggtatgaccaggggggcaat
gcaatcaaaggcaaatccctgacagagacgaggtcatcgggcagcggagcaaggacgaat
tggaaaacactgagcgacgtcaagaatgaagagttgggacaaggagagaaggcggactat
ttcagctgtatagcgacagtgctgtacattcgcaaggagaattgtctgtaccaggcctgt
ccatctgcaggctgcagcaagaaggtcatcgaccaacagaacggactgtatcgctgcgaa
aagtgtggcagagagttccccaacttcaaatacagactcctactttctgccaacttagca
gacttcggggataaccaatgggtgacatgcttccaggatacagctgaggtcctgttaggt
cacactgcagaaacactgggacagctcagagacacagacgaaactgctttcgatgaagtc
tttcagaaagtcaacttcacaactcacctcttcagaaaccgagtcaagctggagacgtac
aacgatgagagtcgggtgaaggtaatcgtcatggaggtccagccagttgaccacagggaa
tacagcaggagactcctcagtaacatccacaaattgaccagctga
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