Clinocottus analis (woolly sculpin): 137802824
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Entry
137802824 CDS
T10471
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03440
Homologous recombination
cana03450
Non-homologous end-joining
cana04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
137802824 (rad50)
03450 Non-homologous end-joining
137802824 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
137802824 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cana03032
]
137802824 (rad50)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137802824 (rad50)
DNA replication proteins [BR:
cana03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
137802824 (rad50)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
137802824 (rad50)
BRCA1-C complex
137802824 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
137802824 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
ABC_tran
AAA_22
AAA_16
zf-met
AAA_29
AAA_13
DUF6284
Motif
Other DBs
NCBI-GeneID:
137802824
NCBI-ProteinID:
XP_068457067
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGIEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLRYATTGELPPG
SKGGAFVHDPKDAHETDVRAQIRLLFTDVNGEKVSIHRSMSCTQKAKNYTFKSLDQVITR
IKDGEKVSLSAKCGELDREMISSLGVSKPVLNNVIFCHQEESNWPLCEGKSLKEKFDSIF
DATKYIKALETMRQLRLKQNQTVTLCRSELNHLKLDKEKAQQIRETVATKEAQLLASRDS
IQLTERQIEPLENRMTDIDTKLGKVMKLDNDIKALDSRKKQMEVDNKELEETMEQVFQGS
NEQLQEVYQNHQRTVKEKERRLTECQKELERAGRECQRLHRVKADLLVEQGRLQLEADRQ
TQSIKNRDTQVRSLSSYLDMEGYDRPPFTTLQLESFNRHATQRLEQEKVTVSQVMADLQD
KEQQKQQSIDEMRDKKTGLERTVELKRDLQGKKQQEMRKIREELQRLEGSSSHLQELENE
LAKVERELQSAVQSANVEELKAEVVELQREKAELDRTQRALDQEMGMLNTNTTARTQMDM
LKKDKMEKDEQVRKIKSRHSEELVTLLGHFPNKRELEDWIYAKSKEVNSTRDRLSKLNKD
LASSEQNKSHIAAEIRKKEQQLASDEEKFFNVCGSQDLEQDLGKLQEDLDKSSKQRAMLA
GATAVYTQFISQLTEDREPCCPVCQRTFPSESDLHEVISDMQSKLRLVPDKLKNTEQDLK
RKEQKRDEMMALRPVRQSIVQFQEKELPELRNRLQTVNREIERLKGDVEEQETLRCTLMS
EEETAKACLQDISLMDRYLMDLKELERKIAQQAAKLQGVDLTRTIQQVSQEKQETQHKQD
TTSSKMELKRKLIQDQQDQIQTLKSTVNETRAEKLQLSSDMQKKQQLEEQCVEFTTEIQS
LTRDIREAKEQLSPLSAALEKLQQEKLELVERKRQRQEEGQEKINTMKERVKSITTLERD
IAKYVNDGKNEYKEQKEAELQETNTQLHEAEKSKDKINKEMGNVRQDIDTQKVQERWLQD
NLTLRKRVEELKGVVAKREDLLKDMGDMQVSQLRQERRDAERKLEELKKNRSHALGRQKG
FEEEILDQRKELRKDQYSKADELYKNMMITMRTTELVMKDLELYYKALDQTIMRFHSMKM
AEINKIVRDLWRSTYRGQDIEYVEIRSDVDENSSAGAKRRVYNYKVVMVKGDTTLEMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRDNIESLAHALVEIIKSRSSQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEITKCSITTLSTYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagatagataaaatgagcatccttggggtgaggagctttgggattgaggataaa
gacaaacaagtcatttcattcttcagtccgctgaccgtgctggtaggacccaacggagca
gggaaaacgactattattgagtgccttaggtatgcaaccacaggtgaacttccccctgga
tcaaaaggcggtgcatttgttcatgatccaaaggacgcccatgagacagacgtgcgagca
cagattcgactcttatttactgacgtcaacggcgagaaagtgtctatccatcgctccatg
tcctgcactcagaaggcaaagaactacacttttaaaagcttggaccaggtcattaccaga
ataaaggacggtgaaaaggtgagcttgtcagcaaagtgtggtgagctggatcgggagatg
atttcttctctgggggtgtcgaagcctgtgctgaataatgtcatattttgtcaccaagaa
gagtccaactggccactttgcgagggcaaatcgctcaaagaaaagtttgactccatcttc
gatgcaaccaagtatatcaaagctctggagacgatgcgtcagttgcgtctcaaacagaat
caaacagtcacactttgtcgatcagagttgaaccacctgaagctggataaggagaaagct
cagcagatccgagaaactgtggccaccaaggaggctcagctgttggcctctagagacagc
atccagctgacagagagacagattgagccactggagaatcgaatgactgatattgacaca
aaactggggaaagtgatgaagctggacaacgacatcaaagctttagacagcaggaagaaa
cagatggaggtggataacaaagagctggaagaaaccatggaacaggtgttccagggttca
aacgagcagctgcaggaagtttaccaaaaccaccagaggacggtgaaagagaaggagcgg
aggctgactgagtgccagaaggagctggagagagcaggacgggagtgtcagagactccac
agagtcaaggctgatctcctggtagaacaaggtcgtctacagctggaggctgaccgccag
actcaaagcatcaagaatcgcgacactcaggttcgctctttgtcgtcctatctggacatg
gagggttacgaccgaccacccttcactacgcttcagcttgagagctttaatcgtcacgca
acacagagacttgagcaggaaaaagtgaccgtcagtcaggttatggcggacctgcaggac
aaggagcagcagaagcagcagtccattgatgaaatgagggataagaagactggcctggag
agaactgtggagttgaagagagaccttcagggaaagaagcagcaagaaatgaggaaaatc
agggaggagctgcagaggctggagggttcgtctagccatctacaagaactggagaatgaa
ctagctaaagtggagcgtgagctacaaagtgcagttcagagcgccaacgtggaggagctg
aaggcagaggtggtggagctccagagagaaaaggcagaacttgaccgcacacagagagcg
cttgaccaagagatggggatgctcaacacaaacaccaccgcccgcacgcagatggacatg
ctgaagaaggacaagatggagaaggatgagcaggttcgtaagatcaagtctcgccacagc
gaggagctggtgacattgctcggacactttcccaacaagagagaactggaggactggatt
tatgccaagtctaaggaggtcaacagtaccagggacagactttccaaactaaataaggac
ctggcttcgagtgagcagaataaaagccatattgctgctgagatacggaagaaggagcag
cagttagccagcgatgaagagaagttcttcaatgtctgtggcagtcaagatctggagcag
gatctgggaaagctacaagaagatctggataagagctccaaacagagagccatgcttgct
ggagccacagctgtgtacacccagttcatcagccagctgacagaggatagagagccctgc
tgccctgtgtgccagcggacattcccctcggagtctgatttgcacgaagttatcagcgac
atgcagtccaaactacgcctggtgccagacaagctgaaaaacacagagcaggacctgaag
aggaaggagcaaaagagagatgagatgatggctctcagacctgtcaggcaatccattgta
cagtttcaggaaaaggagttgcctgagttgaggaaccgcttacagactgtaaacagagaa
atcgagaggctgaagggcgacgtggaggagcaggagactctgcgttgcaccctgatgtca
gaggaggaaaccgccaaggcctgcctgcaggacatctcgctcatggacagatacctgatg
gacctgaaagagttggagaggaaaatcgcccagcaggcagccaaactccaaggagtggac
ctgaccagaaccatccagcaagtcagtcaggagaaacaggagactcagcacaagcaggac
accacctccagcaagatggagcttaaacgtaagctgatccaggaccagcaggatcagatt
cagacgctgaaaagtactgtgaatgagaccagagcagagaagctccagctgagcagtgat
atgcagaaaaagcagcagcttgaggagcagtgtgtcgagttcaccactgaaatacaatcc
ttaaccagggacatcagggaagccaaagagcagctgtcccctttgtctgctgctctggag
aagctgcaacaggagaagctggagctggtggagcgcaagaggcagaggcaggaagagggg
caggagaagatcaataccatgaaagagagagtgaagtcgatcaccaccttggaaagagac
atcgccaaatacgttaatgacggcaaaaatgaatacaaagagcaaaaagaggctgagctt
caggaaaccaacactcagctccatgaggccgagaagtctaaagacaagatcaacaaggag
atgggaaatgtccgtcaagacatagacactcaaaaggtccaggagcgctggttgcaggac
aacttgaccttgaggaagcgtgttgaggagctgaagggcgttgtggctaaacgcgaggat
ctattgaaagacatgggtgacatgcaagtgtcgcagctacgccaagaacgacgtgatgca
gaacgcaagttggaagagttgaagaagaaccgcagtcatgcactaggccgtcaaaagggg
ttcgaggaggagatactggatcaaagaaaagagctacggaaagatcagtacagcaaagct
gatgagctctacaaaaacatgatgattaccatgaggacaacagaactggtcatgaaagac
ctggagctctactacaaggcccttgatcaaaccatcatgagattccacagcatgaagatg
gctgagatcaacaagattgtcagagatctatggcgcagcacctacaggggacaagacatt
gagtacgtggagatcaggtccgatgtggacgagaactcgtccgctggagccaagcggagg
gtttacaactacaaggttgttatggttaaaggagacacgactttggaaatgagaggacgc
tgcagtgccggacagaaggtgttggcatccttgatcattcgtctagctctggcagagacc
ttctgtctgaactgtgggatcctggccctggacgagcccaccaccaacttggaccgggac
aacatcgagtcactggcacacgccctcgtagaaatcatcaagagtcgctcaagccagcgc
aacttccagctgctgatcatcacccacgacgaggactttgtggagctgctggggcggtcc
agctacattgagcacttctaccggatccgtaagaaccaggaccagaactctgagatcaca
aagtgcagcatcaccaccctctctacctatctccactga
DBGET
integrated database retrieval system
