Clinocottus analis (woolly sculpin): 137803379
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Entry
137803379 CDS
T10471
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana04382
Cornified envelope formation
cana04510
Focal adhesion
cana04512
ECM-receptor interaction
cana04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137803379 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137803379 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137803379 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137803379 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cana04147
]
137803379 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
cana00536
]
137803379 (col4a2)
Exosome [BR:
cana04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137803379 (col4a2)
Glycosaminoglycan binding proteins [BR:
cana00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137803379 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137803379
NCBI-ProteinID:
XP_068457885
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MSGTMHGQHRGLRLLLCLSVAFLVSGVHAGGKKLGGPCGGRDCSGGCQCFPEKGARGQPG
LLGPQGPQGPPGRPGDHGIQGPKGQKGDRGRGGLIGPKGSVGLTGVPGFSGNDGIPGHPG
QAGPRGRPGADGCNGTQGESGAPGRHGGNGSPGPPGRAGWKGQKGDTLELSVYMQRFRGD
PGTPGAAGRAGPRGNPGWPGNSGLPGPKGPTGSPGPRGPKGTIPKVLKGLRGEQGDIGPP
GLPGNSTHQLVQPLYGPSGPSGQKGERGEPADNRGEAGVTGLPGPRGLPGINGRPGPRGD
AGQLGPNGRDGPKGVRGDPGELISAGPSWPWSPAAGPAGPPGQPGVQGERGSVGDQGIPG
APGRAAFETQQLVWDFMGPFGLKGERGAKGQQGEPGSPADTSGPQGLEGRPGAPGPPGPK
GTWEEFFKGAPGGRGRPGNAGFKGGKGDHGVCECSVLNSPLGLLGPAGYRGDAGMTGEFG
QEGDSGDRGPRGDDGFPGSPGLRGVPGVPGQKGDAIVASQRGYPGDPGNNGRDGEPGASG
APGRNGSSGLPGARGLPGDGPRGEMGAKGFPGRPGGPGAAGPSGAAGTVLGGHKGQRGSP
GDDGHAGYDGVPGTPGRPGGCSAAGDGGQVDVTGPCDIVPGPPGSPGHPGPSGVPGFSGP
PGPKGPRGQHGADGVKGETGEQGVGGRSGPPGFIGIRGDLGVPGRKGSAGTPGAPGLSGR
YGPQGQKGVHGEIYGASQGPPGDMGPPGSQGSKGQIGDPGAFGYPGMAGMPGMIGFKGES
GALGLRGEEGRPGPAGRYGFPGDPGEAGRPGPHGSAGQPGFAGERGTEGEPGPPGPVGLK
GIPGEYGADGVAGEPGSSGEGGQPGGDGRPGLPGMKGYKGSPGMSGFEGSRGHLGVKGFS
GYAGEPGVPGQVGYKGMRGRSGEKGDRGLRGPSGDKPLIPAQIRVDMKGSKGDHGKYGNP
GFIGPRGVKGFPGVPGYGGTHGLPGEPSSMKGYPGDPGAEGLPGIKGMPGLTGNRGISGF
EGLQGNRGIKGSPGAYGASGDQGRRGVKGEKGPRIDLPGTTGSRGEHGPPGELGQKGLTG
QIGDIGLPGFNGIEGKKGEPGDPGAAGSPGADGQKGTPGQQGLKGFPGPLGTDGHPGFPG
FPGNKGFPGFKGLYGLHGLKGQKGIPGAQGPDTTGHAGEPGGKGEKGEQGEPNRQPGFPG
TAGLKGFQGPHGDFGPPGRPGPRGPVGPDGTSGGPGHGGESGPRGAKGHQGFPGARGFPG
VDAPPSEKGLLGSNGFPGVPGRKGFKGDQGAFGYRGPDGVSGKKGVKGEQGVMGIPGVIG
VKGERGPTGPKGNTGTSGFPGFPGNRGPLPILTKIPGVRGPTGPHGVQGPVGFKGEPGPH
GPPGEPGFVGPSGQAGMPGVAGRPGTPGFRGEFGKVGHPGLQGMEGRRGNPGIHGLPGMP
GRSVSVGYLLVKHSQTDHTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFH
SMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEAPSVAIAI
HSQDITIPQCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGAK
GTCHYFANKHSFWLTSVDQSFHTNPASETLKAGQLLSRISRCQVCMKNL
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcacggacaacacagaggactgaggctgctgctctgcctctccgtc
gccttcctcgtctcaggagttcacgcaggcgggaagaagctcggcggcccgtgtggagga
cgcgactgcagcggcggctgccagtgcttccctgagaagggagccaggggtcagcccggg
ctgctcggcccccaggggccccagggccctccagggcgaccaggggaccacgggatccaa
gggccgaaggggcagaaaggggaccgtggccgcggcggcctcatcggtccgaaaggcagc
gtggggctgaccggcgttcctggattctctggaaacgacggcatccccggccacccggga
caagccgggccgaggggaaggccgggcgccgacggctgcaacgggacgcagggcgagtcc
ggagcgccggggagacacggcggcaacggctcacctggacctcctggccgagccggctgg
aagggccagaagggagacacgctggagctgagcgtgtacatgcagcgcttcaggggagac
ccgggcacgccgggcgccgccgggagagctgggcctcgaggaaacccgggatggccgggg
aacagcggcttaccgggacccaagggtcccaccggctctcctgggcctcgtggaccaaag
ggcacaattcccaaagtgctgaagggactgagaggagaacaaggagacatcggaccaccg
ggccttccaggaaactccacccaccagctggtccagcccctctacggaccctcgggcccg
agtggacagaaaggagagcggggggagccggcggacaacagaggggaggccggtgtgacg
ggtcttcctggccctcgggggctacctggaataaacggacgtcctggacctcggggcgat
gccggccaactgggaccgaacggcagagacggtcccaagggagtcagaggcgacccagga
gagctgatctctgcagggcccagctggccctggtctccagcagctggtcctgccggtcct
cccgggcagccgggcgtgcagggagagagaggctcggttggagaccagggcatccccgga
gcgccgggacgcgccgcctttgaaacacagcaactcgtctgggatttcatgggccctttt
ggtctgaagggggagcgaggagccaagggccaacagggggagccaggaagccctgcagac
acgtcaggacctcaaggccttgaggggcggccgggggccccgggtcctccaggacccaaa
ggaacatgggaggagttcttcaaaggggctccaggagggagaggaagacctggcaatgcc
ggctttaaaggaggaaaaggtgaccacggggtgtgtgagtgcagtgtgctgaactcgccc
ctcgggctcctcggccccgctggttaccgtggtgatgccgggatgaccggcgagttcggt
caggagggagattcaggggatcgaggtcctcgaggagacgacgggtttcctggatctcca
gggctcagaggggtgccgggtgtgccggggcaaaaaggagacgccatcgtggcgtctcag
agaggatatcctggagatccagggaacaacgggcgagacggtgagccaggagcatccggt
gctccaggccgaaatggttcgtctggtctccctggagcccgaggtcttccaggagacggt
cctagaggagaaatgggagccaaggggtttcccggccggcccggtggaccgggtgcagcg
gggcccagtggggcagcaggtacagtcctcggagggcacaaagggcagcgagggtcacct
ggagacgacggccacgcgggatatgatggagttccaggaacacctggcaggccaggcggc
tgcagtgcagcaggagatggaggacaggtggatgtaacagggccctgcgacatcgttcct
ggaccacctggatcgccgggacatccaggacccagcggagtaccgggcttctcaggtcct
ccgggcccaaaaggaccacggggccagcatggagcagacggagtgaaaggagaaacagga
gagcaaggtgtcggtggccggtctggacctccaggtttcatcggcatccgcggagacttg
ggtgttcctggtagaaaaggttcagcagggacccccggtgctccgggcctgagcggccgg
tacgggccgcagggccagaagggcgtccacggagagatctatggcgcctcgcaggggccg
ccgggggacatggggccgccggggagtcaagggagcaagggccagattggagatccagga
gcgttcggctatccaggaatggccggcatgccgggtatgatcggctttaagggagagagc
ggtgctctgggtctgcggggcgaggaagggcgacccggcccggcaggcaggtatgggttc
cccggtgatcccggagaagcaggtcgacctggacctcatgggagcgctggacagccaggg
tttgctggagagcggggaaccgaaggagagccaggtcctccaggtccagtgggactgaaa
ggaatcccgggggagtatggtgccgatggcgtcgctggagagcccggctcatcgggggag
ggcgggcagccgggaggagacggacggccgggacttcctggaatgaaaggctacaaaggc
tcacccgggatgtcggggtttgaggggagcagaggtcatctcggggtgaagggcttcagc
gggtatgcaggggaaccaggagtgccgggtcaggtcggctataaaggaatgaggggtaga
agtggagagaaaggggaccgagggctgaggggcccgtcgggggacaagcctctcatcccc
gcccagatcagggtggacatgaagggaagcaagggcgaccacgggaagtatggaaaccca
ggattcatcgggcccagaggtgttaagggttttcctggcgtgccgggctacgggggaact
catggtcttcctggagaacccagcagtatgaagggttaccccggtgatccgggtgcagaa
gggttgccaggaataaaaggaatgccgggcctgacggggaacagaggaatctctggtttt
gagggactgcaaggcaacaggggcatcaaaggaagcccgggagcctacggagcgtcagga
gaccaaggacggagaggagtgaaaggggagaaaggcccacgcatagaccttccaggaacc
acgggatcgagaggagagcatggtcctccaggagaactgggccagaaagggttaactgga
caaataggggacatcgggttacctgggtttaatgggatcgaagggaaaaagggagagcca
ggtgatccaggagcagcagggagcccaggcgctgacgggcagaagggaacgccgggtcag
cagggcctgaaaggcttccccggacctctgggaacagacggacatcctggttttcctggc
ttcccaggaaacaaaggtttccccggcttcaagggactctatggattacatggactgaaa
ggacagaagggaatcccaggagcacaaggtccagataccaccggacacgctggggaacca
ggaggcaaaggagagaagggagagcagggcgagcccaaccgccagccaggcttccctgga
actgctggtctgaaaggcttccagggaccccatggtgactttggtccacctggccggccg
gggcctcgcgggcccgtcggacccgacgggacgtcgggcggaccaggacacggtggagag
tccggccctagaggagctaaagggcaccaaggcttcccaggagccagagggtttcctggt
gtggacgccccccccagtgaaaaagggctactgggatcaaacggctttcctggagtccct
ggtaggaaaggattcaaaggagatcaaggtgcatttggataccggggaccagatggtgtt
tctgggaagaaaggagtaaaaggagagcaaggagtgatggggattcctggtgtgattggt
gtgaagggagaacgagggccaactggtccaaagggaaacacaggaacctcagggttccct
gggtttccaggtaaccggggtcctcttcccattctcaccaaaataccgggagtgagaggc
ccgacaggaccgcatggggtccaaggaccagtaggcttcaagggggaaccggggccacac
gggccccctggggagccaggtttcgttgggcccagcgggcaggccggcatgcccggggtt
gctggtcgaccaggaactcctggatttcgtggagagtttgggaaagtgggccaccccggc
ctacaaggcatggaaggtcgtcgtggcaaccccggtatccacgggctccccggcatgccg
ggccgcagcgtcagcgtgggatacctgctggtgaaacacagccaaacggaccacacgccc
atgtgtccggtgggcatgtcgaagctgtgggacggatacagtctgctgtacttcgagggc
caggagaaagcccacaaccaggacctcggtctggctggctcctgcctcccgcggttccac
agcatgcccttcctgtactgcaatcctggagacatttgttattatgccagcaggaatgat
aagtcctactggctgtcgacaacggctcctcttcccatgatgcctgtagaagagggagag
atcaaaccgtacatcagccgctgctcagtatgcgaagctccatccgttgccatcgcgatc
cacagccaggacatcaccatccctcagtgtcctgcaggctggcgcagcatgtggatcggt
tactctttcctcatgcacacggcggcaggaaacgaaggcggaggtcagtccttgtcatcg
cccggctcttgcctggaggacttccgcacaacacccttcattgagtgtaacggggccaaa
ggcacatgccactactttgctaacaagcacagcttctggctcacctccgtcgatcagtcg
ttccacactaacccggcatcagagacgctcaaagcgggccagctgctgtcgcgcatcagc
cgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system
