KEGG   Clinocottus analis (woolly sculpin): 137803435
Entry
137803435         CDS       T10471                                 
Symbol
casc3
Name
(RefSeq) protein CASC3 isoform X1
  KO
K14323  protein CASC3
Organism
cana  Clinocottus analis (woolly sculpin)
Pathway
cana03013  Nucleocytoplasmic transport
cana03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cana00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    137803435 (casc3)
   03015 mRNA surveillance pathway
    137803435 (casc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cana03019]
    137803435 (casc3)
Messenger RNA biogenesis [BR:cana03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     137803435 (casc3)
SSDB
Motif
Pfam: Btz TFIIA
Other DBs
NCBI-GeneID: 137803435
NCBI-ProteinID: XP_068457991
LinkDB
Position
Unknown
AA seq 791 aa
MADRRRRRRRASQDSEDDDDESGSGSDSGRSGSPTSKSRVKDPDPPEETAARVEPKVKAE
SECESEDGVGEAVLSDYDSADPEENGSHSEGAEEEAEQFSDEEAPAAASEAEPPAAAQQQ
EEEQEVQEEVEVEKEEEPEEGQEEEQRQRQQQQQQQQQQQQQEEEEEEEEKEAQEEEGGR
SKEENRAEEKENLSGERQSGDGQESTDDPEKNPAGEPGQKLDDDEDRKNPAYIPRKGLFF
EHDVRGHAQEEERPKGRNRKLWKDEGRWDHDRFREEEQAPKSREELIAVYGYDIRNGGAA
ERVHRQRRPRQSSSPGRDKRWRDGGERPVRSWQGGGGGGGGGGPNRAAPPSSLHPSLSCP
SPHPSRAPPRSRPPSYRNNESSAPPVPRERHGPKAACDPSGGVAFRGVASRGVAVRAPGR
SGGRGPCVVIEDVRDQDPSVGAPASSQPGGYRSASPPKRQQDQRGGGDRAASGLAASSDP
ALQSTNREASPPAERPVERKSYALARRTRSRPADLGSKQASVEEPATPAPSGVGGKSWGD
GGGGGGGGGGGGAAAAAAAAAAAAAALEQLDQDVARLSLAGQNWSPSPTSYFRSEMRGLP
GSLHLPASPPQFPNMEEMGVGSNRAKRYSSQRQRAGPEPAPPIHLGVMEGHYYEPMSYQG
PIYAHGDGPAPIPPQGMLVQPEMHLPHPGLHPHQSGGPISSPALYGGPPVPLSPGQPQQL
LPPPFYPPPGVMTFPYPTMYPTPQAQAQVTYGGVTYYDTVQQQAQPKPSPPRRTSQPVTV
KPPPELHFVSE
NT seq 2376 nt   +upstreamnt  +downstreamnt
atggcggaccggcggcgaaggaggaggcgcgcgtcccaagacagcgaggacgacgacgat
gagtccggctcgggttcggacagcgggaggtccgggtccccgaccagcaagagccgcgtg
aaggacccggacccaccggaggagaccgcggcccgggtggagcccaaagtcaaggcggag
tccgagtgtgagagtgaagacggagtgggagaagcggttctctctgactacgacagcgcc
gacccagaagagaacggctcccattcagagggagctgaagaggaggcggagcagttcagc
gatgaagaagctccagcagccgcaagcgaggctgagcctcctgcagccgcccagcagcag
gaggaggagcaggaggtgcaggaggaggtagaggtggaaaaggaggaggaaccagaggag
gggcaagaggaggagcagcggcagcggcagcagcagcagcagcagcagcagcagcagcag
cagcaggaggaagaggaggaggaagaagagaaggaggcgcaggaggaggaaggaggacgc
tctaaagaggagaacagggctgaggagaaggagaacctgtctggagaacgacagagtgga
gacgggcaggagtcgacagacgaccctgagaagaacccagctggggaaccgggtcagaag
ctcgacgatgacgaggaccgtaagaacccggcctacatcccgaggaagggtttgttcttt
gagcacgacgtgagaggccacgcccaggaggaggagagacccaaaggccgcaacaggaag
ctgtggaaggacgagggccgctgggaccacgaccgcttcagagaggaggagcaggcaccc
aagagccgcgaggagctcatcgccgtctacggctacgacatccgcaacgggggagccgcc
gagcgtgtgcaccgccagcgccggcccagacaaagttcgtctcccggcagagacaagcgg
tggagagacggaggagagcgtccggtccggtcctggcagggaggaggaggaggaggagga
gggggaggaccgaaccgagcagctcctccctcgtccctacacccctccttgtcgtgcccc
tccccacacccttcccgggcgccgccccgcagccgcccgccctcatacaggaacaacgaa
tcgagcgcgcccccggtgccccgagagcggcacggccccaaagctgcgtgcgacccctcg
gggggcgtagccttcagaggcgtggcctccaggggcgtggcagtgcgggccccgggccgc
agcgggggtcgcggcccctgcgtggtcatcgaggacgttcgggatcaggacccgagcgtc
ggagcgccggcgtcgtcgcagccgggcgggtaccgatccgcctcaccgccgaagcggcag
caggaccagcgggggggcggtgacagggccgcgtcaggattggccgcttcctctgacccc
gcccttcagtcgaccaatcgggaggcatctcctcccgccgagcggccggtggagcgcaag
tcgtacgctctcgctcgcaggactcgatcccggccagcggacctgggcagcaagcaggcc
tcggtggaggagcccgccacgcccgcccctagcggggtaggtgggaagagctggggggac
ggaggtggaggaggtggaggaggaggaggaggaggagcagcagcagcagcagcagcagca
gcagcagcagcagcagcgctggagcagctggaccaggacgtggctcgactcagtctggcc
ggacagaactggagtccgagtccaacgtcctacttcaggtctgagatgagaggcctcccc
ggcagcctgcacctccccgcctcgccaccgcagttccccaacatggaggagatgggtgtc
ggctccaatcgagccaaacgctattcgtcccaacgccagagggcggggccagagccggct
ccgcccattcacctcggagtgatggagggacactattacgagcccatgtcgtaccaggga
cccatctacgctcacggagacggccccgcccccatcccgccgcaaggcatgctggtccag
cctgagatgcacctgccccacccaggtctccatccccaccaatcgggcggcccgatctct
agccccgccctctacgggggcccgcccgtccctctgtctccggggcaaccgcagcagctg
ctgccgccgcccttctacccgccgccgggggtcatgaccttcccgtacccgaccatgtac
ccgacgccgcaggcgcaggcgcaggtgacgtacggcggcgtgacgtactacgacaccgtg
cagcagcaggcgcagcccaagccgtccccgccgcgccgcacctcgcagcccgtcaccgtg
aagccgccgccggagctgcacttcgtctcagagtga

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