KEGG   Clinocottus analis (woolly sculpin): 137804066
Entry
137804066         CDS       T10471                                 
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
cana  Clinocottus analis (woolly sculpin)
Pathway
cana03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cana00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    137804066 (edc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cana03019]
    137804066 (edc4)
Messenger RNA biogenesis [BR:cana03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     137804066 (edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     137804066 (edc4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_THOC3 Beta-prop_EML_2 Beta-prop_WDR3_2nd WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EDC4L WDR55 Beta-prop_WDR36-Utp21_2nd Pdc1_Ge1
Other DBs
NCBI-GeneID: 137804066
NCBI-ProteinID: XP_068459130
LinkDB
Position
Unknown
AA seq 1388 aa
MASNSKIDMEGATQHLRDILKLDRPGNSTEASSDVLRMPSFNGELNGLLGAAGLLGSTDR
SSMSDSTRPISTDLCSTQECQIICLSGDDGSTCIPITSNNVEIVASQDTSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVSFTERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPEDSPLNSHRRLIWC
PFIQDEENQDDTSQTLALLHEDLAEVWDLEVLRANHSSWPVDDTDVKEGLITIDGHTQRV
SEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDNHKR
QDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLPSLKASLDLAAEF
LVLTDVQRKVLYVMELRQDLDKGKASFTAVSEFLLTHPVLSFGVRDVAHCRLRHTEVLPA
EEESESMTTEGIQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNLSSSFMPNSDSQDGFA
GFSDHLTDQSSDKESGGGSQSDLRKIPSLPATTDFLSNSSASSGTKLMTPDAFMTPSTSV
PASPGSSASSLTIVTAIGSNSDSTNRAMDEVSQSPNRADKILNSSSSSLTLSTSTSSPRA
VSAVLLPGLDNIQALASPSGPLALDSPQVLDSPLLPPLASPTRARSPDVISSASTAMSQE
MPEIASQTLQLQRSIVSSLEPLPLSALQTDSMASAASALHLLTSPRTANNGLLPLELGGA
DGTVGGAVESEPRLSHTPSLLENALSQDNPGVGGGSSDGSVGHTPWPAAPDITRETRNSL
RDNGLGDCSREESKDRHLGSPYHRRSYHLAQNDSQDAGAEQSDPDDEVASLASSSGNCGS
RSSHRLPVKDWKTSPRASPKVKRKTKKDDNELSQSRQMDSGQMNAEVQDELLMLLRSQQR
ELTDLRGQIEAMQSTIMVQVEHVLTNHQEQEQRRLERVLAERQNHQQQLQEQLGQQLSNT
LSSVLTNRLDKVLREEMKKTVPPAISKSLEPVTGQLSNTIAAKLTAVEITLKDNVSKVVK
SKNTTDAIGRAAAEAIQGPIQAAYKDAFQGIVLPVFERGCQSMFQQINDSFKQGTQEYIQ
QLESHMKNRKQREQEAREPVITQLQQTIESFQSSTDQLATNITANVRAEVQHQIQMMVGN
LQESILSHVQRIVKGEVSMAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQANILQ
LLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCALSQPVLLSLIQQLSSNLT
TRSELKISYLEDAVMNLDHADPLTRDHMSSVLAQVRPKLFAFLQQDPHSPLSKRARRLMM
MLQGLVSH
NT seq 4167 nt   +upstreamnt  +downstreamnt
atggcgtccaattctaaaatagatatggaaggtgcgacccagcatctccgggacatcctc
aagctcgacagacccgggaacagcaccgaagcatcaagtgatgtcctgagaatgccatct
tttaatggagagctgaatggattattgggagcagccggccttctgggaagcacagatcgg
tcatccatgtccgactctaccagacccatctccacagacctttgcagcactcaggagtgt
cagataatctgcctttctggtgatgatggctccacctgtatccccatcacctccaacaac
gtggagatagtggcgagtcaggataccagcatcaacagcaaggctcgtggcagcaacaag
gtgaagattcaaccagttgccaagtacgactgggaacacaagtattattatggcagactg
atagctgtgtccaactccttcctcgcgtacgccatcagaggagccaacaaccatgcaatg
attcgcgtcctgagcgttagctttaccgagcgctcgttactgaagggcttcaccggagca
gtcacagatctggcttttgcccacctcgactcctcgctgttgggctgcgtcgatgaggcg
ggcaacctgatggtctggcagctcacctgcactggaagcaagatacttgatcagatagtg
gtccatatccgacggccagaagactctccgctgaactcccaccgccgcctcatctggtgc
ccgttcatccaggatgaggagaaccaggacgacaccagccagaccttagctcttctacat
gaagacctggctgaggtgtgggacctggaggtcttgagagccaaccacagcagttggccc
gtcgatgacactgacgtaaaagaaggccttatcacaatcgatggacatacccagcgagtc
agtgagggggccctatctccagatggaactgtgttagccacagccagccatgatgggtac
atcaagttctggcagatatacatcgaagggggacaagacaagccgagatgtcttcacgaa
ttgcggccccatggaggacggcccctctcctgcctgctcttctgtgacaaccacaaaaga
caggacccagatgttccgttctggcggttccttataactggagcggatcagaaccaggag
ttgaaaatgtggtgcactgtttcctggacttgcttgcagacgatcaggttttctccagat
ttgtttaactcatcagttctgcctagtctgaaggccagtctggacctcgctgcagagttt
ctcgtcctcaccgacgtacagaggaaggttctgtatgtgatggagctccggcaggacctg
gataaaggaaaggccagtttcacagcggtgtcggagttccttctgacacaccccgtgctc
agctttggggtccgggatgtcgcccactgccgattgcgacacactgaggtcctccctgca
gaggaggagagtgagagtatgacaacagagggcattcaaggacctacagagtcgaagtct
gggatccaaattaaactctactgcgtccacacaaagagtctgcaggatgtccagatctgg
tttcaacccaacttgagttccagcttcatgcccaattcagattctcaggatggttttgca
gggttttcagaccatcttactgaccagagctccgacaaggaatcaggaggtggttcccag
tctgacctaaggaagatcccatcacttcctgcgaccactgacttcctgtcaaactcgagt
gcgagcagtggcaccaagctgatgactcccgatgccttcatgacgccaagcacttcggta
ccggcatctcctggcagcagcgccagcagtctgaccatcgtgacggctatcggcagcaac
tctgactcaactaacagagctatggatgaagtcagtcagagtcctaatagagcagacaag
atccttaacagcagcagcagtagtctgacactctccacctccaccagcagcccgagagct
gtgtctgctgtgcttctgcctggactggacaacatacaggcattagcatccccgagcggc
cctctcgcactcgacagccctcaggttttggattctcccctcctgccccctctggcctct
ccgaccagagcccgctcccccgacgtcatctcctccgcctccacagccatgtcccaggaa
atgccagagattgcgtcccagaccctgcagcttcagcgcagcatcgtgtccagtttggag
ccgctacctctctctgctctgcagacggacagcatggcctccgccgcgtccgctctgcac
ctcctcacctcaccacgcacagccaacaacggtctgttgcccctcgaactcggaggtgct
gacgggacggtgggcggggcagtggagtctgagcccagactcagtcacaccccatcgcta
ctggagaacgccttatcgcaggacaaccccggggtcggtggagggtcttcagatggcagc
gttggccacacaccgtggccggctgcgcccgacatcaccagagaaaccaggaacagtctc
agggacaacggccttggagactgttcaagagaggagtcaaaggacagacacctgggctca
ccgtaccaccgacgctcctatcacctagcacagaatgacagtcaggatgctggcgcggag
cagagtgaccctgacgacgaggtggccagcctggcatcgtcctcaggaaactgtggttct
cgttcctctcacagactaccagttaaggactggaagacctcgccgcgagcctccccaaaa
gtgaagaggaagaccaagaaagatgacaatgaattgtctcagtccaggcaaatggactct
ggtcagatgaatgccgaagtacaggacgagctgctgatgctcctgcgcagccagcagagg
gagttaactgacctgcgtgggcagattgaagccatgcaaagcaccatcatggtccaagta
gagcacgtcctcaccaaccaccaggaacaagagcagcgccgactagagcgagttctagca
gagcgtcagaatcaccagcagcagcttcaggaacaacttggccagcagctcagcaacacc
ctcagctcagtgctgaccaaccgacttgacaaagtgcttcgagaggaaatgaagaagacg
gtcccgccagcaatctccaagagcctggagccagtgacggggcaactgagcaacacgatc
gctgccaagctgaccgctgtggagatcaccctgaaggacaatgtcagcaaggtggtcaag
tccaagaacacaacggacgctattggccgagcagcagccgaggcgatacaggggcccatc
caggcagcctacaaagacgccttccagggcatcgtgctgcccgtgtttgagagaggctgc
caatcgatgtttcaacaaatcaacgacagctttaaacaaggcacacaagaatacatccag
caactcgagagccacatgaagaacagaaagcagagggagcaggaggcacgggaacccgtg
attactcagcttcagcagacgatcgagagcttccaaagctccactgatcagctggccact
aacatcacggccaacgtgcgcgctgaggtccagcaccagatccagatgatggtgggaaat
ctgcaggagtctattcttagccatgtgcagcgaatcgtcaaaggggaggtgagcatggca
atgaaagagcagcaggcggtggtcacctccagcatcatgcaggcgatgaggtcagcggcc
ggcacgcccgtccccacagcacacctcgactaccagacgcagcaggccaacatcctgcag
ctcctccagcagggccagctgaaccaggctttccagcaggctctgtctgcaacagatctg
aacctggtcctgtacgtgtgcgagaccatcgactctcagcaagtgtttggtcagcacccc
tgcgctctcagccaacccgtgctgctgtcgctcatccagcagctctcctccaacctcacc
acacgctctgagctcaaaataagctacctggaggacgccgtgatgaatctggaccatgcc
gacccgctgacgagagaccacatgtcctccgtgctggcccaagtgcgaccgaagctgttt
gccttcctgcagcaggacccccacagcccgctcagcaagagggcgcggcgcctgatgatg
atgctgcagggtctcgtcagccactag

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