Clinocottus analis (woolly sculpin): 137804665
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Entry
137804665 CDS
T10471
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137804665 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cana03019
]
137804665 (cnot1)
Messenger RNA biogenesis [BR:
cana03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
137804665 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
137804665 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
137804665
NCBI-ProteinID:
XP_068460144
LinkDB
All DBs
Position
Unknown
AA seq
2392 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAVDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHAGFIIRDSKGLHIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGGTAPSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLSTGISASIGSSLGMPTVNTDPFGTRKMSTPGLNPPTFQQSKIEASDLSQVWPEANQ
NFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQSQQPGVPKAPQPGQPSTLVTTTTTTTTVAKTPAITRPTPSTFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ
YLVMKRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSL
EEQLSAPKKEAKPPEEMLPVSTTEFVPFAAPPSTPAVITTACTTTGPPTPQFSYHDINVY
ALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQIIR
KDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQR
EMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVV
LTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWA
TDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQK
AVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYN
VEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEADL
FHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDD
PPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTE
MCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLN
KVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFH
ILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVEL
NKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPD
PFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSN
EPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRY
LFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLI
TFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7179 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
acaaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgtgtgtca
ctgatatcaaagccaaactttatcgctactctgtgttacgccgttgacaatcccctgcac
taccagaagagtttgaagccatcggcccatttattcactcaactgagtaaagttcttaag
ctcagcaaggtccaagaggtaatatttggacttgctttgctcaactccagcaacgcagac
cttcgcggttttgctgcgcagttcatcaagcagaaacttccggacctcctgcggtcatac
gttgacgcggatcttggaggaaaccaggaaggtggcttccaagacattgctatagaggtc
ttgcagttactcctctcacatctactctttggccagaagggagccagcggggtagggcaa
gagcagattgacgccttccttaagacactttgcagagatttcccgcaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggagagttagctaagaccatgatggagagttcgctcgcagaattcatgcaa
gaagtcggctatggcttctgtgcaagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaggtgactgctagccaggtagccagggtcctgggcatgatggctcgtacc
cactctggcttaactgatggcatcccactacagtccatctccgccccaggaagtggcatc
tggagcgatggtaaggacaagaacgatggctcacaggcacacacgtggaatgttgaggtc
ctcattgacgttgtgaaagaagtgaatcccaacctgaacttcaaagaggtgacatacgaa
ctagaccatgcaggctttataatccgggacagtaaaggtctgcatatagtcgtgtatggc
atccagagggggttgggcatggaggtcttccctgttgatctcatctatcggccatggaaa
cacgccgagggacagctgtcattcattcagcactccctgatgagtccagaagtgttctcc
tttgctgactacccttgccacactgtggcaattgacatccttaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggatctggtggagagcctgcttcggctc
tctgaagtgggacaatatgagcaggtgaagcagctgttcagctttccaatcaagcattgc
cccgacatgttggtgctggcattgctgcagatctccacctcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttttgggtaaccaccctaactcggccattatc
ctgcactacgcctggcatggacagggacagtctccctccatccgtcagctgattatgcat
tcgatggctgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
ctcgatgtggcccaggacttgaagtctctatcgatgttgctgaatggaactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ttgactgacaaaatcagagagcatggggaacctttcatccaggcgtgtgtgacattcttg
aagaggcgctgcccgtccattatggggggtctggcccccgacaaggaccagcccaaaagc
gcccagctgcccccagagaccttagctaccatgctggcctgcctgcagtcctgtgctggg
agtgtgtcccaagagctgtctgagacgatcctgaccatggttgccaactgcagcaatgta
atgaataaagcccgacaaccaccaccaggggtaatgccaaagggacgggcccccagcacc
agcagcctggatgccatctctcctgtacagatggactccctttccggcatgggttccttg
aacctggggggcacagccccctcccacactcaaagcatgcagggtttcccaacctcacta
agttcggctttcagtaatccccagtctccagcaaaggcctttccaccactctccaaccca
aaccccagcacaccatttgggggcattggcagcctgtcctcccagctccctggtatggac
tctggtcccttgagcacaggcatcagcgctagtattggttctagtctagggatgccaact
gtcaacacagacccttttggcaccaggaagatgagcaccccaggcctgaacccacccaca
tttcaacagagtaagattgaggcctctgacctttctcaggtgtggcccgaggcaaaccag
aactttagtaaggagatagacgatgaggcaaacagttacttccagcgcatctacaaccac
ccacctcacccaactatgtctgtggatgaagtactggagatgctgcagaggtttaaggat
tcaaccatcaagcgggagcgcgaggtgttcaattgcatgctacggaacttgtttgaagaa
taccgattcttcccccaatacccagacaaggagctgcacatcactgcctgcctttttggt
ggcattatcgagaagggtctcgtcacctacatggccctaggcctggccctccgatatgtt
cttgaagccttaagaaaaccctatggatccaaaatgtattactttggaattgctgcccta
gataggtttaaaaacagacttaaggactatcctcaatattgtcaacacctagcttcaatt
gcccatttcttgcaattcccccaccatttacaagagtgtgtgcagtatattgagtatggc
caacagtcacgggaccctccggtgaagatgcaaggctccattaccacccctggcagtctg
gcactggcacaagtccaagcccagtcgcagcaacctggtgtccccaaggcccctcagcca
gggcagccaagcactctcgtcaccaccacaacgactacaactacagtggccaagacccct
gccatcacaagaccgacacccagcaccttcaagaaggatgtgcccccctccataaacaca
actaacattgacaccctgctggtggccactgatcaaacggaaaggattgtcgagcctccg
gaaaatgtccaggagaagattgcttttatcttcaacaacctttcccagtccaacatgaca
cagaaggttgaggagttgaaagagactgtgaaggaagaatttatgccctgggtgtctcag
tacctggtgatgaagcgcgtcagcattgagcccaatttccacggcctctactccaacttt
ctggacacgctcaagaatcctgagtttgtgaagatggtcctcaatgagacttacaggaat
atcaaggttctgttgacttctgacaaggcagctgccaatttttctgatcgctccctgctg
aagaacttgggccactggttgggcatgattacactggctaaaaacaagcctatcctctac
acagatctggaagtcaagtctctgctactggaagcctacgtgaaaggccagcaggagcta
ctgtatgtagttccctttgtggccaaagttttggagtcgagtctacgaagcatggtcttt
aggcctcagaatccctggaccatggccatcatgaatgttctcgctgagctgcatcaagaa
catgatctcaagctcaacctaaagtttgagattgaagttctgtgtaagaacttgtctttg
gacatcaatgacctcaagccagggaacttgctgaaggacaaagaaaagcttaagagtctg
gaagagcagctatctgcaccaaagaaagaggcaaagcctccagaagagatgctgccagtt
tctaccacagaatttgttccatttgcagcacctccctcaaccccagctgtcatcaccacc
gcttgcacaaccactggccccccaaccccacagtttagttaccacgacatcaatgtgtat
gccttggcaggcctggctccacacatcaatataaacgtcaacatcccgctgctacaggcc
catcctcagttgaagcagtgcgttcggcagtcggtggagcgagcagttcaggagttggtg
caccccgtggttgaccgatctatcaaaatagccatgacaacctgtgagcaaatcatcagg
aaggactttgccctggattcggaagagtcccgcatgcgcgtggctgctcaccatatgatg
agaaacctgaccgctggcatggccatgattacctgccgcgagcccctgctcatgagcatc
gccaccaaccttaagaacagctttgctgctgcacttcgggccccaacaccccaacaacgg
gagatgatggaagaggctgcagccaggattgctcaagacaactgcgaactggcttgctgc
ttcattcagaaaacggccgttgagaaggctggccctgaaatggacaagagactagccacg
gagtttgaactgaggaagcatgcgcgccaagagggacgtcgctattgtgatcctgttgtt
ctgacttaccaggctgaacgtatgcctgagcagatcaggctcaaggtgggaggagtggac
ccaaaacaactggctgtgtatgaggagtttgctcggaatgttccaggtttcttacctagc
aatgatctctcccaacccactggcttcttggctcaacccatgaagcaacaggcatgggcc
accgatgacgtggctcagatttatgataagtgcatggcagacctggagcaacatcttcat
gccatccctccagcccttgccatgaaccccttgacccaggctctgcgcagcctactggaa
gccgtggccttggcaaggaactccagggacggcatcgccgcactcggccttctgcagaag
gctgtggaaggtcttctggatgccactagtggtgctgatgccgacttgctgctccgctac
agggagtgccacctgctggtgctcaaagcccttcaggatgggcgtgcctatggaccacag
tggtgcaataagcagataacccggtgtctgattgaatgtcgtgatgagtacaaatacaac
gttgaggcagtggagcttctgatcagaaaccacctggtcaacatgcagcagtatgacctg
cacctggcacagtcgatggaaaatggactgcactacatggcagtcgcttttgccatgcag
ctggtgaagctcctgctggttgatgaacgcagtgtcagccatgtcacagaggccgacctc
ttccacacaattgagactttaatgagaacctgtgcacactccagagccaatgcacctgag
ggccttccccagctgatggatgtcgttcgctccaactatgaggccatgattgaccgggcc
cacggaggacccaacttcatgatgcactctgggatttcacaggcgtcagaatatgacgat
cctccaggcctgagagagaaggccgagtacctcctgagggaatgggtcaacctgtaccac
tcggctgctgccggcagggatagcaccaaagctttctctgcctttgtaggccagatgcac
cagcagggcatcctgaagactgatgacctgatcacaaggttctttcggctgtgcacagaa
atgtgtgttgagataagctaccgggcgcaggctgagcagcagcacaacccagcagccagt
gcagccatcatcagggccaagtgttaccacaacctggatgcctttgttcggctcatagcc
ctgctggttaaacactctggagaggccactaacacagtgacaaaaatcaacctcctcaac
aaggtgctgggtatcgtagtcggggtgcttattcaggaccatgatgtccgtcagacagaa
ttccaacagctgccataccaccgcattttcatcatgctgctgttggaactcaacgctccc
gaacatgttctggagaccatcaactttcagacactcaccgccttctgcaataccttccac
atcctgagacccaccaaagcacccggctttgtgtacgcctggctggaactcatctcccat
cgcatcttcatagccaggatgctagctcacactccgcagcagaagggttggcccatgtac
gcacagctgctgatcgatctcttcaagtacctggccccattcctgaggaatgtagagctc
aacaaacctatgcaaatcctctacaagggcacactgcgagtgcttctggtcctgctgcat
gacttcccagagttcctgtgtgactaccattacggcttctgtgacgttattccgcccaac
tgcatccagcttcgcaacctcatcctcagtgcctttccacgaaatatgaggcttcctgac
cctttcacacccaatctgaaggtggacatgctgagtgagatcaacatcgcaccccgtatt
ctcaccaacttcacaggtgtgatgccttcccagttcaagaaggacctggactcctatctg
aagactcggtcaccagtcaccttcttgtctgagctgcgcagcaacctgcaggtgtctaac
gagccaggaaaccgctacaacatccagctgatcaatgctctagtgttgtatgtgggcaca
caggcaatcgctcacatccacaacaagggcagcaccccctccatgagcacgatcacccac
tcggcacacatggacatcttccagaacttggccgtggatctagacactgaggggcgttac
ctgttcctgaacgcgattgccaatcagctgcgctaccccaacagccacactcactacttc
agctgcaccatgctctatctgtttgctgaggccaacaccgaggccatccaggagcagatc
actagggttctgttggagaggctgatagtgaacaggcctcacccatggggtctcctcatc
acattcatcgagctgatcaagaatcctgccttcaagttctggagccacgactttgtgcac
tgtgctcccgagatcgagaagctgttccagtcggtggcccagtgctgcatgggacagaag
caggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
