Clinocottus analis (woolly sculpin): 137804821
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Entry
137804821 CDS
T10471
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03020
RNA polymerase
cana03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
137804821 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
137804821 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137804821 (polr2b)
03400 DNA repair and recombination proteins [BR:
cana03400
]
137804821 (polr2b)
Enzymes [BR:
cana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
137804821 (polr2b)
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
137804821 (polr2b)
DNA repair and recombination proteins [BR:
cana03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
137804821 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
137804821
NCBI-ProteinID:
XP_068460322
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQEEENPYEEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYQLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDHLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggaggaagagaacccgtacgaggaggacgacgatgagatcaccccggac
ctgtggcaggaagcctgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cggcagcagctggactcctttgatgagttcatccagatgtcggttcagaggatcgtggag
gacgcgccccccatcgacctgcaggccgaggcccagcacacctcaggagaggtggaggag
ccgcctcggtaccagctgaagtttgagcagatctacctgtccaagcccacccactgggag
agagacggggcgccgtctcccatgatgcccaacgaagcccggctcaggaacctcacatac
tcggcccccctttacgtcgacatcacgaagaccatcataaaggagggcgaggaccacctg
cagactcagcaccagaagaccttcatcggtaaaattcccatcatgcttcgctccacctac
tgtctgctgagcggcctgacggaccgagacctgtgtgagctcaacgagtgtcctctcgac
cccggaggctatttcatcatcaacggctctgagaaggtgctgattgctcaggaaaagatg
gccaccaacaccgtgtacgtgtttgccaagaaggactcaaagtacgcctacaccggcgag
tgtcggtcctgcttggagaactcgtcccggcccaccagcaccatctgggtcagcatgatg
gcccgaggaggacagggagtgaagaagagcgccatcggccagaggatcgtgtccacgctg
ccgtacatccggcaggaagtgcccatcatcatcgtgttccgggcgctgggcttcgtgtcg
gacagagacatcctggagcacatcatctacgacttcgacgaccccgagatgatggagatg
gtgaagccctctctggacgaggcgttcgtgatccaggagcagaacgtggcgctgaacttc
atcggctccagaggagcgaaacccggagtgacgaaagaacggagaataaaatacgccaaa
gaagttctgcagaaagaaatgctgccgcacgtcggagtcagcgacttctgtgagaccaag
aaggcctacttcctagggtacatggtccacaggttgctgctggccgctctcggccgaaga
gagctggacgacagagatcactacggcaacaagaggctggacctggccgggccgctgctg
gccttcctgttcagagggatgtttaagaacctgctgaaggagatcaggatctacgctcag
aagttcatcgaccgagggaaagacttcaacctggagctggccatcaagacccggatcatc
tccgacggcctgaagtactcgctggccaccgggaactggggcgacgtgaagaaggcccac
caggcccgagccggggtctcacaggtgttgaaccggctgaccttcgcgtccacgctctct
cacctccgtcgactcaactctccgatcggccgagacgggaaactggcgaaaccccggcag
cttcacaacacgctgtgggggatggtgtgtccggccgagacgcccgagggccacgcggtg
gggctggtgaagaacctggccctcatggcctacatctcggtgggctcgcagccctcgccc
atcctggagttcctggaggagtggagcatggagaacctggaggagatctcacctgccgcc
atcgcagacgccacgaagatctttgtgaacggctgctgggtcgggatccacaaagacccc
gaacagctgatgaacaccttgaggaaactccgcaggcagatggacatcatcgtgtccgag
gtgtcgatgatcagagacatcagagaacgagagatcagaatctacacggacgccgggcgg
atctgccgaccgctgctgatcgtggagaagcagaaactgctgctgaagagacggcacatc
gaccagctgaaggaaagagagtacaacaactacagctggcaggatttggtggcgagcggc
gtggtggagtacatcgacactctggaggaggagacggtgatgctcgccatgacccccgat
gacctccaggagaagggcgtggcctactgctccacctacacgcactgtgagatccacccg
tccatgatactcggcgtctgcgcgtccatcatccccttccccgatcacaaccagtctccc
aggaacacgtaccagtctgcgatggggaaacaggccatgggcgtctacatcaccaacttc
catgtgcggatggacaccctggctcacgtgttgtactacccgcagaaaccgctggtcacc
acccggtccatggagtacctgcgctttagggagctgcccgcaggtatcaactccatcgtg
gcgatcgcctcctacaccgggtacaaccaggaggactctgtgatcatgaaccgctcggcc
gtggaccgaggcttcttcaggtctgtgttctatcgatcctacaaagagcaggagtctaaa
aaaggtttcgaccaggaggagatctttgagaagccgacgcgtgaaacatgtcaaggtatg
cgacacgccatctacgacaagctggacgatgacgggctcatcgcccccggcgtccgtgtc
tccggcgaggacgtgatcatcgggaagacggtgacgctgccggagaacgacgacgagctg
gacagcaccaaccgccgctacaccaagagggactgcagcaccttcctgaggaccagcgag
accggcatcgtggaccaggtgatggtgacgctgaaccaggagggctacaagttctgcaag
atcagggttcgctcagtgaggattcctcagattggagacaagttcgccagccgccacgga
caaaaaggaacctgtggaatccagtacagacaagaggacatgccgttcacctgcgaggga
atcacacccgacatcatcatcaaccctcacgccatcccgtccaggatgacggtcggccat
ctgatcgagtgtctgcagggcaaggtgtctgctaacaaaggtgagatcggcgacgcgacg
ccgtttaacgacgccgtcaacgtgcagaaagtgtcgaacctgctgtctgaatatggatac
cacctgagaggaaatgaggtgctgtataacggcttcacggggaggaagctgacgtctcag
atcttcatcggtccaacttactaccagcgtctgaaacacatggtggacgataagatccac
tcgagggcccggggccccgtgcagatcctcaacaggcagccgatggagggccggtcccgg
gacggcggtctgcggttcggggagatggagcgagactgtcagatcgctcacggagccgct
cagttcctcaaggagcgactgttcgaggcttctgacccgtatcaggttcacgtctgtaac
ctgtgtggactgatggccatcgccaacacgcggacgcacacgtatgagtgccgaggctgc
cgcaacaagacccagatctctctggtccggatgccgtacgcctgtaagctcctcttccag
gagctgatgtccatgagcatcgctcctcgtatgatgacgtcatag
DBGET
integrated database retrieval system
