Clinocottus analis (woolly sculpin): 137804961
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Entry
137804961 CDS
T10471
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
137804961 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cana03021
]
137804961 (smarca2)
03036 Chromosome and associated proteins [BR:
cana03036
]
137804961 (smarca2)
Transcription machinery [BR:
cana03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
137804961 (smarca2)
Chromosome and associated proteins [BR:
cana03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
137804961 (smarca2)
Chromatin remodeling factors
BAF complex
137804961 (smarca2)
PBAF complex
137804961 (smarca2)
GBAF(ncBAF) complex
137804961 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
BRK
Bromodomain
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
137804961
NCBI-ProteinID:
XP_068460609
LinkDB
All DBs
Position
Unknown
AA seq
1583 aa
AA seq
DB search
MSTPSDTSGGMSHPGPSPGAGLSPGPILGPSPGPDPSPGSVHSMMGPSPGPGTPNAPHGM
QGQSEYSQDGMYPMHKTMEGMNEKTMAEAMHFGHMKGVGMRSLHSGMGPPQSPMDQHSQG
YISPHPSPMGVHEHASSPMSGGRGPTPPHMPPSQSGPMMPMDPQSAAPNMSNMSQQGRGP
SAFSPVQLQQLRAQILAYKILGRGQPLPDNLQLAVQGKRSLPTMQQQQQQQQQQQQQAAG
ASPYNRPPGMPMAPLGGPQSSPCPTPIMQGHIQSAGPKPWSDGPGGDNQAGAQKHLTPVA
GGRPSPAPPQASALPVGPMAGGSVAPQPPGQQQPSPMLQMQKQNRVTPIQKPQGLDPVGI
LQEREYRLQARIAHRIQELESLPGSLSPDLRTKATVELKALRLLNFQRQLRQDVVACMRR
DTTLETALNSKAYRRSKRQTLREARMTEKLEKQQKLEQEKKRRQKHQEYLNSILQHAKDF
KEYHRSMSGKMQKLTRAVANWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKK
DKRLAYLLQQTDEYVANLTTLVYEHKAAQAAKDKKKKKKKKKVDGDGEGTSAIGPDGEPM
DDSSQTSELPVKVIQTETGKVLQGTEAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFED
EEEEEGVKAEAEDEKIIDPNGVEVEVAAANHIIESAKQDVDDEYIIPTGQTTQASYYGVA
HAVIERVEKQSTLLINGTLKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITY
LMERKRINGPFLIIVPLSTLSNWVYELDKWAPSVVQIAYKGTPVLRRGLVPQLRSGKFNV
LLTTYEYIIKDKQILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQ
NKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPF
LLRRLKKEVESQLPEKVEYVVKCEMSAIQKVLYRHMQRGILLTDGSEKDKKGKGGSKTLM
NTIMQLKKICNHPYMFHHIEESFAEHLGFSTGVISGLELYRASGKFELLDRILPKLHATN
HRVLLFCQMTTLMTIMEDYFGYRNFQYLRLDGTTKADDRAQLLKKFNEPGSKDFIFLLST
RAGGLGLNLQVADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILA
AAKYKLNVDQKVIQAGMFDQKSSSHERQAFLQAILETEEQNEEEDEIPDDETLNQMIARN
EDEFELFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIRDEEEVERLTYEEEEEKMFGR
GSRCRRDVDYSDAMTEKQWLRAVEDGNLEEMEEEIRLKKRKRKRRPDKEASSREDGGSKA
KKKRGRPPADKHSPNPPKLTKQMNTIIDTVINYRDGAGRQLSEVFVQLPSRKELPEYYEL
IRKPVDFKKIKDRVRNHKYRVVGDLERDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSA
RQKIAKDEESDDESEEEEEEEDEDESEAEAKSVRVKIKLSKEARGHDKGKKRQSRGKAKP
VVSDDDSDDDLDANDQSDKSDDD
NT seq
4752 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccttcagacacgtcaggtggtatgtcacatcctggaccttctccgggggct
ggtctatccccggggcccatcttgggccccagccccggaccggacccctcaccaggctct
gttcacagtatgatgggacctagtcctggacctggaacacccaatgcacctcatggcatg
cagggacaaagtgaatattctcaggacggcatgtatcctatgcacaagaccatggagggg
atgaatgagaagaccatggcagaagcgatgcactttggccacatgaaaggtgtggggatg
agatctctgcatagtggtatggggcctccacagagcccgatggaccagcacagccaagga
tacatatccccccatccatcccccatgggtgtacatgaacatgcatctagtcccatgtca
ggaggtaggggacccacaccgccccacatgcctccctcccagtcgggccccatgatgccc
atggacccccagtcagccgcgcccaacatgtccaacatgagccagcagggccggggacct
tctgccttcagtccggtccagctgcagcagctcagagctcagatcctggcctacaagatc
ctgggccgtgggcaacccctgcctgataacctccaactagctgttcagggaaagaggagt
ctacccacaatgcaacagcaacaacagcagcagcagcagcagcagcagcaggcagctggt
gccagcccttacaacaggcctccaggtatgcccatggctcctttgggtggcccccaatcc
agtccctgcccgaccccaatcatgcaaggacacattcaaagcgcaggacccaagccttgg
tccgatggtccgggcggtgacaatcaagccggcgctcagaagcacctcaccccggtcgcc
ggcggacggccgtcccccgcccctccccaggcctcggcgctgcccgtcgggcccatggcg
ggcggctcggtggccccgcagccccccgggcagcagcagccgtctcccatgctccagatg
cagaagcagaaccgcgtcacgccgatccagaagccgcagggcctggacccagtggggatc
ctgcaggagagagagtacaggctgcaggctcggatcgcacatcgaatccaagaactggag
agtttgccgggctcgctgtcccctgacctgaggaccaaagccacagtggagctcaaggcg
ctgcgtctgctcaacttccagcggcagctgcgacaggacgtggtggcgtgcatgaggcga
gacacgaccctggagacggccctcaactcgaaggcgtacagacgcagcaagcggcagacg
cttagggaggctcgcatgaccgagaagctggagaagcagcagaagctggagcaggagaag
aagcgcaggcagaagcatcaggaatatctcaacagcatcctgcagcacgctaaagacttc
aaagagtaccaccgctcgatgtccggtaagatgcagaagctcacgcgggccgtcgccaac
tggcacaccaacacggagcgggagcagaagaaggagacggagagaatcgagaaggagaga
atgaggaggctcatggcagaggacgaggaaggctacaggaagctcatcgaccagaagaaa
gacaagcgtctggcctacttgctgcagcagacggacgagtatgtggccaacctcaccacg
ctggtgtacgaacacaaggcggcacaggccgccaaggataagaagaagaagaagaaaaag
aagaaggtggatggagatggtgaaggcaccagcgccattggaccagatggagagccgatg
gacgacagcagccaaaccagtgagctgcccgtcaaagtcattcagaccgagaccgggaag
gttttgcaggggacggaggctcccaaatccagccagctggaggcctggctggagatgaac
cccgggtatgaagtcgccccacggtcggacagcgaggagagcggctcagagttcgaggac
gaggaggaagaggagggggtcaaggcagaagcagaggacgagaagataatcgatcccaat
ggagtggaagtggaagtggcggctgccaatcacattatcgagtcagccaagcaggatgtg
gacgacgagtacatcattcccaccggacagaccacccaggcgtcgtactacggggtggcc
cacgccgtcatcgagagggtggagaagcagtcgactctgctgatcaacggcacactgaaa
cattaccaggtccaggggttggagtggatggtgtccttgtacaacaacaatctgaatggc
atcctggctgatgaaatgggtctcggcaaaaccatccaaaccatcgccctcatcacctac
ctgatggagcgcaagaggatcaacgggcccttcctcatcattgtgcctctctcgactctg
tctaactgggtctatgaacttgacaagtgggcgccctctgtggtccaaatagcgtacaag
ggcacccccgtgctgcgccgtgggctcgtgcctcaactccgcagcgggaagttcaacgtc
ttgctgaccacctatgaatacatcattaaggacaagcaaatcctggccaagatccgttgg
aagtacatgatcgtggacgagggccaccgcatgaagaaccaccactgcaagctgacccag
gtgctgaacacccactacgtggctccccgtcgcctcctgctaaccggcacgccgctgcag
aacaagctgcccgagctctgggcgctgctcaacttcctgctgccgaccatcttcaagagc
tgcagcaccttcgagcagtggttcaacgccccgttcgccatgacgggagagagggtcgac
ctaaatgaggaggagaccatcctgattatccggcgtttgcacaaggtgctccgccccttc
ctgctgcgcagactgaagaaggaggtggagtctcagctgccagaaaaggtggagtatgtc
gtgaaatgtgaaatgtctgcgatacagaaagttctgtaccgccacatgcagagaggcatc
ctccttaccgacggctcggagaaagacaaaaagggcaaaggaggatcgaagaccctgatg
aacaccatcatgcagctgaagaagatctgcaaccacccgtacatgttccaccacatcgag
gaatcttttgctgagcacttgggtttttcaaccggcgtcatcagtggacttgaactgtac
cgagcctctggaaagtttgagctcctggatcgcatcctgccgaagctgcacgccaccaac
catcgagttctgctgttctgccagatgaccacgctcatgaccatcatggaggactacttt
ggctaccgcaacttccaatatctacgtcttgacggaaccaccaaggctgacgaccgagcg
cagctgctgaagaagttcaacgagccgggatcgaaggacttcatcttcctgctcagcacc
agagccggcggcctcggtctcaacctgcaagtcgcagacaccgtcatcatctttgacagc
gactggaacccgcaccaggacctgcaggctcaggaccgggctcaccgcatcggtcagcag
aacgaggtgcgcgtgctccgtctctgcaccgtcaacagcgtggaggagaaaatcttggcg
gctgccaaatacaagctcaacgtggaccagaaggtcatccaggcgggcatgttcgaccag
aagtcctccagccacgagcgccaggccttcctccaggccattctggagaccgaggagcag
aatgaggaagaagatgagatacccgatgacgaaaccctcaaccagatgatagcgcgcaat
gaagatgaatttgagctctttatgcgcatggacatggaccgacggcgggaggacgccagg
aacccgaagcgaaagcctcgtctcatggaggaggacgagttgccttcttggatcatcaga
gacgaagaggaggtcgagcggctcacgtacgaggaggaggaggagaagatgtttggccga
ggatcgcgctgtcgtcgggacgtggactacagtgacgcgatgactgaaaaacagtggctg
agggccgttgaggatgggaacctggaagagatggaggaggagatccggctgaaaaagcgc
aaacgcaagagacgtccggacaaggaagcttcgagcagagaggacgggggctccaaggcc
aagaagaagcgtgggcgcccgccggctgacaaacactctcccaacccgccaaaactcacc
aagcagatgaacaccatcatcgacacggtcatcaactacagagatggggcggggaggcag
ctgagcgaggtcttcgtccagttgccgtccaggaaggagctcccggagtattacgagctg
atcaggaagcctgtggacttcaagaagatcaaggatcgcgtgaggaaccataaataccga
gtcgtcggagacctggagagggacgtgatgctgctctgtcacaacgctcagaccttcaac
ctggaggggtcccagatatacgaggactccattgtccttcagtctgtgtttaaaagcgcc
aggcagaagattgccaaggatgaagagagtgacgacgagagcgaagaggaagaggaggag
gaggacgaggacgaatcggaggccgaggccaagtccgttcgggtcaagatcaagctgagc
aaggaggcgcgcggccacgacaagggcaagaagaggcagagccgcgggaaggccaagccg
gtggtcagcgacgacgacagcgacgacgacctggatgccaacgatcagtcagacaagagc
gacgatgactga
DBGET
integrated database retrieval system
