Clinocottus analis (woolly sculpin): 137805054
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Entry
137805054 CDS
T10471
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cana Clinocottus analis (woolly sculpin)
Pathway
cana03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cana00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137805054 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cana03041
]
137805054 (snrnp200)
Enzymes [BR:
cana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137805054 (snrnp200)
Spliceosome [BR:
cana03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
137805054 (snrnp200)
Complex C
U5 SnRNP specific factors
137805054 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
137805054
NCBI-ProteinID:
XP_068460822
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPNGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDIKKMKGYTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPAEDTRYHVLVNLGKKIS
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERITGKMESDQELSKIL
YQLQETEKEDIIREERSRRERLRKSRVDDLEAMDIDHGESMAPRQLLDLDDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLYKTALETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVCKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSADPLLERRRTDLVHTAAN
VLDKNTLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKFVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMRHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCSEKDLAPFLEKITDSTLKETLGNGVGYLHE
GLSAIERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYNNIPIRH
HEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFSNRYPNIELSYEIAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSTDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgttactgcccgtagcttgcagtacgagtacaaagcgaactccaatttggtg
ttgcaagctgatcgctccctgatcgaccgcacacggagagatgagcccaacggagaggta
ctgtccctggtggggaagctggagggcaccaagatgggcgacaaggctcagaggaccaaa
cctcagaagctggaggagagacgagacaagaggcgaaaaagagatgaggacagacacgac
atcaagaaaatgaagggttatactctcctgtctgagggcattgatgaaatggttggcatt
gtgtacaagcccaaaaccaaagaaaccagagagacctatgaagtgttgcttagcttcatc
catgctgctttgggagatcagcctcgtgatattctgtgtggagcggcggatgaagtattg
gcagtgttgaagaatgacaaaatgagagacaaggaaaggcgccgtgaagtagagcagctt
cttggacctgctgaagacactcgctaccatgtgttggttaatttgggcaagaagatctca
gactatggaggcgacaaggacttgcagaatatggatgacaacattgatgaaacctatggt
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaagaccagtttggagaggtt
cgagacgaacactcagatgaagacagcgaaggagaggaggccggtgtgggctgcgctctt
tcagccaaccttggtgccacaggcgacgtgatgactgcaaagaaaaaagatctacatcct
cgagacattgatgccttctggctccagcgtcagctcagccgtttctatgatgatgccatt
gtctcccagaagaaagctgatgaagttttagaaatccttaagactgccagcgatgataga
gaatgtgagaaccagctggtgctgctgctgggcttcaacacctttgatttcatcaaaatc
ctccgtcagcatcgtcgcatgattcagtattgtactatgctggcaagtgctcagagtgag
gcagaaaaggagcggattactggaaagatggagtctgatcaggagctctcaaagatcctt
taccagctgcaagaaacagagaaggaggatattattcgggaggagcgatctcgcagggaa
aggttgaggaagtctcgtgttgatgacttggaagccatggacattgaccatggagagtca
atggcccctcgacagttgctcgaccttgatgacctggccttcacccagggcagccatttc
atggccaacaagcgttgccaactgccagacggctcatttcgtaaacagcgcaaaggttat
gaggaagttcacgtgcctgccctcaaacccaagccgtttggtgatgatgaggtgcttgtg
gccattgagaagttgcctaagtatgcacaggctggatttgaaggtttcaaaaccctaaat
cgcatccagagcaaactgtacaagacagccttggagacagatgagaacctgctagtgtgt
gcacctacgggagctggtaagaccaatgttgctttgatggcaatgctgagagaaattgga
aagcacataaacctggatggaaccatcaatgtggacgacttcaaaattatctacattgca
cccatgcgctcactcgtacaggagatggtgggaagtttcagtaagcgcttggcaagttac
ggtatcacagtgtctgagttaacgggagaccaccaactctgtaaagaggagattaacgcc
actcaaatcatcgtctgcacccccgagaaatgggacatcatcacccgtaaaggcggagag
cgtacctacacccagctagtgcggctcattatcattgatgaaatccaccttctgcacgat
gaccgtggacccgtgttggaatctctggtggcaagaaccatccgcaatgtggagttgact
caggaggatgtgcgtctgctgggcctcagtgccacactgcccaactatgaagatgtggct
acctgcctgcgtgtagatcctgccaagggactcttctactttgacaacagtttccgcccc
gtgccccttgagcagacttatgtcggcatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagattgtctatgaaaagatcatggagcatgctggaaagaaccaggtgctg
gtatttgtccactctcggaaggagacgggaaagacggcaagggccataagagacatgtgt
ttggagaaggacacactgggtcttttcctcagagagggttcagcatctactgaagtgtta
agaactgaggctgagcagtgcaagaacctcgaactgaaggatttgctgccctatggcttt
gctatccaccacgctggtatgaccagagttgaccgtacgctggtagaggatctgtttgct
gatagacacatacaggtcctggtgtctacagctactctggcttggggtgtcaacctgcct
gcacacactgtcatcatcaaaggcactcaggtgtatagcccagagaaaggcaggtggact
gaactcggagcactggacattttgcagatgcttggtcgagccggtcgtccccagtacgac
accaagggagagggaatccttattacgtcccatggagagctacagtactatctgtccctg
cttaaccagcagctgcccatagagagtcagatggtgtgcaagctgcctgacatgctcaat
gctgagatagtactgggcaatgtgcagactgtgaaggatgctgtgaactggctcggttac
acctacctgtatgtgcgcatgctgcgtaaccccaccctgtacggtgtctcccacgatgac
cggagtgcagatcccctgctggagagacgcaggacggacctggtgcacacagcagcaaat
gtcctggacaagaacactcttgttaaatatgacaagaggactggtagcttccaggttaca
gaccttggacgcattgccagtcacttctacatcactcatgactccattcaaacatacaac
cagctgctgaagcccactctcagtgagattgagctcttcagagtattttcactatcctca
gagttcaggaacattactgtgagagaggaggaaaagttggaacttcagaagcttctggaa
agagttcccattcctgtcaaggaaagcattgaggagcccagtgctaagatcaacgtgctg
ctccaggcgtacatatctcaactcaaactggaaggctttgccctcatggcggacatggtg
tatgtcacacagagtgctggaaggttaatgcgggccatatttgagattgttctcaatagg
ggctgggctcaactgacagacaagaccatgaatctttgcaagatgattgacaaaagaatg
tggcagtcaatgtctccactgcgacagttcaagaaactgccagaggaagtgatcaagaag
atagagaagaagaacttcccctttgagcgcctctatgaccttaaccataatgagattggt
gagctgatccgaatgccaaaaatggggaagacaatccacaagtttgtccaccagttcccc
aaactggacctggctgtccatttgcagcccataacccgttctacactgaaagtggagctc
accatcacacctgacttccagtgggatgacaagattcatggatcatctgaggctttctgg
atcctggttgaggatgtggacagtgaggtcatcctccatcacgagtacttcctgctcaaa
gccaagtacgcccaggacgaacaccttgtgactttctttgtcccagtgttcgagcctctg
cctccacagtacttcatccgcgtggtctcagacagatggctctcctgtgagactcaactc
ccagtgtccttccgccatctgatcctaccagagaaataccccccacctactgagctgctg
gacctgcaaccattgcccgtcactgctctcaggaactctgcctttgaggctctctaccag
aacaaattccccttcttcaaccccattcagacacaagtattcaacgctgtgtacaacagt
gacgacaatgtgtttgttggagctcccactggcagtggaaagaccatctgtgcagagttt
gctattctgaggatgctgctgcacaacgcagaaggtcgctgcgtctacatcaccccaatg
gaagcattggctgaacaggtgtttgtcgactggcaccagaagttccaggacatcctgaac
aaaaaggtggtgctgctgacaggagaaactagcacagacctgaagctcttaggaaaaggt
gacatcattgtcagtacccctgacaaatgggacatcctgtctcgccgctggaaacaaagg
aagaacgtccagaacgtcagccttttcattgtggacgaggctcacctcatcggaggagaa
aacggacccgtgttggaggtcatctgctccaggatgaggtacatctcctctcagattgag
cgccccattcgcatcgtggccctcagctcatctttgtccaacgccaaagatgtggcgcac
tggctgggttgcagcaccacagccacattcaactttcaccccaacgtcagacctgtgcct
ctggagctgcacattcagggcttcaatgtgagtcacactcagactcgcctgctgtccatg
gctaagccggtataccacgccatcatgaggcattctccctccaagccagccgtggtgttc
gtcccttcccggagacagactcgtctcacggccatcgacatcctcactttctgtgctgct
gacgtggttcctcagaggttcttacattgcagtgagaaagaccttgcaccattcctggaa
aaaataactgactcaactcttaaggagactctgggcaacggcgtgggctacctgcacgag
ggcctgtctgcaatcgaacgtagaatagtagagcagctctttaactcaggtgctgttcag
gtggtagtgtcctctcgttcactctgctggggcatcaacatctctgcacacctcgtcatt
gtcatggacacccagtactacaacggcaaaatccatgcctatgtggactatcccatatat
gacgtcctacagatggtgggcaaggcaaacagaccaatgcttgatgatgagggacgttgt
gttatcatgtgtcagggctcaaagaaggacttcttcaagaagttcctgtatgagccgctg
ccagttgagtctcatttggaccactgcctccatgaccacttcaacgccgagattgtaact
aagactgtggagaacaagcaggacgctgtggactacctgacttggacattcctctaccgc
cgtatgacccagaaccccaactactacaacctgcaaggcatgtcacatcgtcacctgtca
gaccacctgtctgagttggtggaacacacactccatgacctggagcagtccaagtgcatc
agcatagaggacgagatggacgtagcaccgctcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtggactaattgagatcatttccaacgctgctgaatacaataacatcccgattagacat
catgaggattcacttctccgacagttggcacagaaagtgccccacaaactgaacaacccc
aagttcaacgatccccacgtgaagacaaacctgctgctgcaagctcacctctccaggatg
cagctgagtgctgagctgcagtctgacacagaggatatcctaagcaaggcggttcgtctg
atccaggcctgtgttgatgtgctgtccagtaatggctggctgagtcctgcactggcagct
atggagctggcccagatggtcacccaggccatgtggtccaaggactcgtacctcaaacag
ctgccattcttcacctcagagcacattaagcgttgcacagacaagggtgtggagagtatc
tttgacatcatggagatggaggatgaagacagaactgctctgctgcagctttcagacgcc
cagatggccgacgtggctcgcttctctaaccgctaccccaacatagagctgtcctatgaa
atagcagaaaaggacaatatcaagagtggcagtccagttctggttcaagttcagctggag
agggaggaggaggtgaccggacctgtcatcgcacctctcttcccacagaaacgtgaggag
ggctggtgggtggtgatcggtgaccccaagtctaacagtctcatctccatcaagaggctg
actctgcagcagaaagcgaaggtgaagctggactttgttgcaccggcgatgggcgttcat
aactacaccctgtacttcatgagtgatgcatacatgggctgtgaccaggagtacaagttc
agcacagatgtgaaggaggctgacagcgatggagacagtgactcagactaa
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integrated database retrieval system
