Clinocottus analis (woolly sculpin): 137805168 Help Entry 137805168         CDS       T10471                                  Symbol col27a1b Name (RefSeq) collagen alpha-1(XXVII) chain B   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism cana  Clinocottus analis (woolly sculpin) Pathway cana04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cana00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     137805168 (col27a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:cana00536]     137805168 (col27a1b) Glycosaminoglycan binding proteins [BR:cana00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    137805168 (col27a1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Motif Other DBs NCBI-GeneID:  137805168 NCBI-ProteinID:  XP_068461069 LinkDB All DBs Position Unknown AA seq 1675 aa AA seqDB search MEPDNAPYSELRSSGVGGRILILWTILCCTCSLRLAQAQDVDVLQQLGLSGRRSAGSSSS GARAIPNGIIFFKSGVILTPRARVQVPLHTVIPASYSTTNLSLILSLSVHRVNGAFLFSV LSKKRKVQLGVQFVPGKILVRVGQRSSVLFDYDVHDGQWHNLALDIRGRRVSLHTSCGKR SAHADLRLKKEEALDAEGSFLLGKMNHNSMPFEGAICQFDIYPSAKAAQNYCDYIKKQCR EADTYRPVFPPLLPLISTDPNITVPHTTQLSLAEASRKAGRLSTVNETSAHQTAGKKPSG ERTDLPASARPSELRPDLHATAALNPSATEAPEIPRVTSVQDVKPTSLIPVTTAATDGFH MYLLEPSQFSLLDGAPGLKGEPGPSGLQGLPGLPGKPGKRGPRGPPGPHGNPGRPGPPGV KGQKGDYGQSPGHAPKGLKGEPGVTGPPGMFGHDGHKGQKGHPGPSGLPGEPGERGDDGS PGAKGYPGRQGLSGPVGKMGPKGITGHIGLLGRFGLPGPDGERGIPGAHGKKGKMGRPGF SGDFGERGPPGPDGNPGELGSPGPCGVAGLIGDMGSAGVMGSPGLPGLKGVPGNPGDPGL KGDKGDIGLAGEPGERGFQGDKGMLGPPGSPGPLGKPGPQGKPGEKGPDGSPGPPGLEGF PGDIGPPGQNGPEGPKGKQGIRGLPGPRGTLGLQGDEGPVGLAGLAGLEGRPGRQGFPGL TGPDGLKGETGTTGEVGKVGERGLSGFVGPVGETGVAGEKGDRGKTGAPGPPGETGPMGH TGIPGETGPPGLQGIPGPPGSLGSIGVRGPKGERGPRGPDGPVGEKGSAGVQGTDGPPGK LGFHGDAGRLGEPGEAGPNGFPGVQGPSGPPGAKGIAGEPVSLLGVYIHFGSIFEKYTIN PYPAQKRPHTLSLLLAKCHRHNQSSDHNYLIYTLPFLERQLYCSLTGPAGPSGTIGPLGA MGSWGLLGRAGERGLPGELGEKGDIGLPGNTGEQGLIGQRGEPGTDGEAGRSGPDGAKGD KGDAGQEGTEGDRGEIGLQGKEGPSGPPGLVGVRGQEGKPGDIGERGQPGTKGTKGQQGH LGEPGSTGEQGEMGFDGQKGARGTIGPVGAPGRMGPPGDPGILGYEGHTGPQGPLGPPGP KGEKGEQGDDSKVEGPAGPQGGRGPPGNRGERGEPGDHGHIGQIGVDGKRGEAGASGLPG HLGPKGQPGWKGSKGDQGQKGKSGARGASGTKGHAAPEGPLGPRGVVGREGLEGQAGVDG LPGEDGTRGVAGEQGEDGEVGLPGKPGQQGTTGETGLPGSQGSYGPKGERGLPGQTGASG KKGYVGGMGYPGKQGEQGPKGQPGDTGQQGFPGVLGLFGPKGPLGDVGPAGIQGPKGPRG LLGMEGALGPVGIIGPSGHPGPKGDKGSRGETGLQGPRGFRGPRGPPGPPGLPSSSLSLR NEALGVAFQVIMDSHAALRPEKYPSVDLLMLDQGTEIFKTLQHLSTLIQSLKNPLGTRDN PARICRDLQSCEQRMYDGTYWIDPNLGCAADTIEVMCNFTAGGQTCLKPISVSKLETGVG RIQMNFIHLLSTEAVQHITVHCLNTPVWAAGPSLQPSSRALSFKAWTGEVIQAGDLLEPL IPRDDCWIKDGRWHQTHFIFQTQDPNLLPIVDVYNLPTRERAARFHLEVGPVCFL NT seq 5028 nt NT seq  +upstreamnt  +downstreamnt atggagccggacaatgccccgtactccgaactcagaagctctggagtcggggggaggatt ctgattctttggactatactctgttgcacctgctctctacggctagcgcaagcacaagat gtggatgttctgcagcagctcgggctctctgggcgaagatcggccgggtcgtcatcttca ggcgctcgagccatccctaatggcatcatcttcttcaagtctggggttatcctcacgccg agggcacgcgtccaggtgcctctgcacactgtcatccccgcttcctacagcaccaccaac ctctccctgatcctcagcctgtctgttcatcgcgtcaacggcgccttccttttctcggtt ctgtctaagaaaaggaaagtgcagctcggagtgcagttcgtgccggggaagatcctggtg cgcgtggggcagaggagctctgtgctcttcgactacgacgtccacgatggccagtggcac aatctggctttggacatccgaggacgccgggtgtccctgcatacttcttgcgggaagaga agcgcgcacgcagatttgcgtttgaaaaaagaggaggctctggatgcggagggctcgttc ctgttgggcaaaatgaaccacaactcgatgccgttcgagggtgccatctgccagtttgac atttatccctctgctaaggcagctcaaaactattgtgattacattaagaaacaatgcaga gaagccgacacgtatcggcccgtgttcccccccctgctacctctaatctccacagaccca aacatcactgtcccccacacaactcaactctcattggcggaggcatccagaaaggctggc cgcttgtcaacggtgaacgaaacatctgcgcatcagactgcgggcaaaaaaccttccggc gaaagaacggatttacctgcttccgcccgaccgtccgagctgcggccggaccttcacgcc acagctgctctcaacccgtcggccacagaagctccagagataccacgagtgacgagcgtg caggatgtcaagcccacctcacttattccagtcactacagctgcaacagatggcttccac atgtacctcctggaaccgagccagttctcactgctggatggagcacctggactaaaggga gaaccaggaccgtcgggccttcaaggacttccaggcttgccaggaaagccagggaagagg ggtccgaggggtcccccgggcccacatggaaatcctggtcgtcccggacctcctggagtg aagggacaaaaaggagattacggacagtcacctggtcatgccccgaaaggactaaaagga gagcctggcgtcacgggcccacctggaatgttcggccacgatggacacaagggacaaaaa ggtcatcctggtccttctggtctcccaggtgaacctggtgaacggggagatgatggaagc cccggggccaaaggctatcctggcaggcagggcttatccgggcccgtgggcaaaatgggg ccaaaaggaatcacgggtcacataggcctcctcgggcgttttggccttcctggtcctgat ggcgagagaggaattcctggcgctcatgggaagaagggcaagatgggtaggccggggttt tctggtgactttggagagagaggacctcctggccctgatgggaacccaggggagctggga tctcctggcccatgtggagtcgctggtcttattggagacatgggctctgctggcgtcatg ggctcaccaggactaccaggactcaagggagtacctggaaacccaggggaccccggactg aaaggtgataagggggatattggcttagcaggggagccaggggagcgtggattccaaggg gacaagggtatgcttggcccgcccgggtcgccgggtcctcttggaaaacctggaccacag ggcaaacctggtgaaaagggccctgatggttcacctggtcctcctggcctcgagggtttt ccaggtgacatcggcccgccaggacaaaatggccccgaaggacccaaaggaaagcaaggg ataagaggtttgccaggtccaaggggaacacttggtcttcagggagacgagggaccggtc gggctcgctggactcgctggactcgagggcaggcctgggaggcagggattccctggactg acaggcccagatggactcaagggcgagaccgggacaaccggcgaggtcggaaaagttggc gagaggggactgtctggtttcgtcgggcccgttggagagactggcgtcgcgggcgaaaag ggggatcgaggcaaaacaggagccccgggtccgccaggtgaaacggggccgatgggtcac actggaatacctggggagacgggaccacctggactgcaggggatcccagggcctcccggt tcactgggaagcattggcgtcagaggacccaaaggcgagaggggtccgaggggtcctgat ggcccggtgggggagaaagggtccgctggagtgcagggcaccgatggtccaccaggaaaa ttgggtttccacggggacgcgggaaggcttggcgagccaggggaagccgggccaaatgga tttccaggcgttcaaggaccctccggacctccgggcgccaaaggaatcgcaggagagccg gtgagtttattaggtgtttacatacattttgggtccatatttgagaaatatactataaac ccatatcctgctcagaaacgacctcatacactttctctgctcctggccaagtgtcacaga cacaatcagagctcagatcacaactatttgatttacaccctccccttcctggagcggcag ctctattgtagcctgactggaccagcggggccatcaggaacgatcgggcccctgggggcg atggggtcttgggggctgctggggagggctggagagagaggactgcctggtgaactgggg gagaagggggacatcggtctgcctggcaacaccggggagcagggtttgattggccagaga ggtgagccaggcactgacggggaggctggacgaagtggacctgatggagcgaagggtgac aagggggatgctggccaagaaggcactgaaggagaccggggtgaaatcggtctgcaagga aaggaaggaccctctgggcctcccggattggtcggtgtcaggggtcaggaaggcaaaccc ggcgatatcggtgaaagaggacaaccaggaacgaaggggaccaagggtcaacaaggtcac ctgggtgaacccgggtcaaccggtgagcagggagagatggggtttgatggacagaaggga gcgagaggaaccatcgggccagtgggtgctccagggagaatgggcccaccaggagatcca ggcatattaggttacgagggtcacacgggaccgcagggccccctcggacctcctgggcca aaaggtgaaaagggggagcagggagacgacagcaaggtagaaggtccggcaggtccccaa ggtggcagaggtcctccgggaaacagaggagagagaggagagccgggcgatcacggacac attggtcaaataggtgttgatggaaagagaggtgaagctggtgcctcagggcttcctgga caccttgggccaaagggacagccaggctggaaaggatccaaaggtgaccaaggtcagaaa ggaaaatccggggcgagaggagcatctgggaccaaaggacacgcagctccagagggtcct ctcggcccgcggggagtcgtgggcagggagggactcgagggccaggcgggcgtggacgga ctgcctggtgaagatggaaccagaggagtcgcgggggagcaaggagaagatggagaagtg ggcttacctggcaaacctgggcagcagggcacaactggtgagacggggcttcctggaagt caaggctcctacggaccaaagggtgagaggggtcttccgggccaaactggtgcctcggga aaaaaaggctatgtcggcgggatgggatacccaggaaaacaaggagagcagggacccaaa gggcaacccggggatactggccaacaaggatttccaggggtgctgggtctgtttggaccg aagggacccctgggagacgttggcccagcagggatccagggaccaaaaggaccccgtggt ttgttgggtatggagggagctctgggccccgttggcatcattggccccagcggtcatcct ggacccaagggtgacaaaggaagtcggggggagacggggttgcaaggaccaaggggtttc cgtggccctcgcggacctcctggaccaccgggtcttcccagttcctcactgtcacttagg aatgaggctcttggtgtcgccttccaggtcatcatggactcccatgctgccctgaggccc gagaagtatccgagcgtggacctgctcatgttggaccagggcacggagatcttcaagacc ttgcagcatctcagcactctgatccagagtctgaagaacccgctgggaacccgggacaac ccggcgcggatctgccgggaccttcagagctgtgaacagaggatgtacgatggcacttac tggatcgatccaaacctcggctgtgctgccgacaccatagaggtgatgtgcaacttcact gctggtggacagacttgtctgaaacccatctcagtgtccaagctggagacgggagtgggt cgtatccagatgaacttcatccaccttttgagcaccgaggccgtgcagcacatcaccgtc cactgcctcaacacccccgtgtgggcggcaggaccctccctgcagccgtcatccagggct ctgagcttcaaggcctggacgggggaggtgatccaggccggcgacctcctagagccgctc atcccccgggacgactgttggatcaaagatggccgctggcaccagacccacttcatcttc cagacgcaggacccaaacttactccccatcgtggatgtgtacaacctaccgacccgagag cgcgcggcgcgctttcacctcgaggttggacccgtgtgcttcttgtag

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