Colobus angolensis palliatus (Angola colobus): 105523296
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Entry
105523296 CDS
T08744
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cang
Colobus angolensis palliatus (Angola colobus)
Pathway
cang03008
Ribosome biogenesis in eukaryotes
cang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cang00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105523296 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
105523296 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cang03019
]
105523296 (XRN1)
03009 Ribosome biogenesis [BR:
cang03009
]
105523296 (XRN1)
03016 Transfer RNA biogenesis [BR:
cang03016
]
105523296 (XRN1)
03036 Chromosome and associated proteins [BR:
cang03036
]
105523296 (XRN1)
Messenger RNA biogenesis [BR:
cang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105523296 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
105523296 (XRN1)
Ribosome biogenesis [BR:
cang03009
]
Eukaryotic type
Pre-60S particles
RNases
105523296 (XRN1)
Transfer RNA biogenesis [BR:
cang03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105523296 (XRN1)
Chromosome and associated proteins [BR:
cang03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105523296 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
105523296
NCBI-ProteinID:
XP_011813473
Ensembl:
ENSCANG00000037495
UniProt:
A0A2K5JHP2
LinkDB
All DBs
Position
Unknown
AA seq
1706 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWAALDKNEGEMVTSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDIVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWYDRDTEFVYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHHYSS
SSSVSCGHLGGLNHSPQSLFVPTQVSAKDDDEFCNIWQSLQGSGKMQHFQPAVQEKGAVL
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEEGKSPKAECWSQKMSNKQPNSGIEN
FLASLNISKENEVQSSHHGDPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEMKQI
GNEIPVSSIRRDEYGLPSQPKQNKKLASYVNKPHSAHEYHNVQSMDNVCWPAPSQIPPVS
TPVTELSRICSRVGMPQPDFSFLRTPQTMTVCQVKLSNGLLIHGPQCHSENEAKEKAALF
ALQQLGSLGVNFPLPSPVFANYPSAVPPGTIPPVFPPPTGWDHYGSNYALGAANIMPSSS
HLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGMPGGVHNQFIPLQVTKKRVANKKNFEN
KEAQSSQATPVQTSQPDSSNIVKVSPQESSSASLKSSQIAQPASSFQVETASQGRSISHH
KSTPSSSSRRKSRKLAVNFGISKPSE
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcagagcggtatccctgcctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcagtgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaata
tttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagagaagggagaa
actcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatg
gccaggttacatgagcatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttttctctcttaagagaagaagttcgatttggaggcaagaaaacacaacgggtatgtgct
ccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgattat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatggggtttcttgttggtaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaaactctcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatgg
tttgaaagcaaagttggtaacaagtacctcaacgaagcagcaggtgtagcagcagaagaa
gccagaaactacaaggaaaagaaaaaattaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggcgaaatggtaacttctaaggataatttagaagatgagact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggggttgacatagtatctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccttatcattatgcacctttcctatctgatatacgcaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccgtttgaacagcttcttgctgtacttccagca
gccagcaaaaatttacttcctacatgctaccagcatttgatgaccagtgaagactcacca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaagaatgg
gaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagaca
tgtaaccactcactcaaaaaagaagagaggaaaagaaaccaacatagtgagtgcctaatg
tgctggtatgatagagacacagagtttgtctacccttctccatggccggaaaagttccct
gccatagaacgatgttgtacaaggtataaaataatatcattagatgcttggcgtgtagac
ataaacaaaaacaaaataaccagagttgaccagaaggcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtggcgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtggatgcagaatcagatgaa
cttaccgtagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcct
caccttgaggaagctagagttgtggctgtatcagatggggaaactaagttttacttggaa
gaacctccaggaacacagaagctttatttaggaagaactgccccaccatctaaagtggtt
catcttggagataaagaacaatctaactgggcaaaggaagtacaaggaatttcagaacat
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgac
tcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtcttt
atgctgggaactccctattatggctgcactggagaagtgcaggattcaggtgacgtgatt
acagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaaaaatgaggaggtacctggatataccaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttctggcagagtacttagagagagctccggaactatttagctat
atagccaaaaatagccaagaggatgtattctatgaagatgacatttggcctggagaaaat
gagaatggtgctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtg
aagccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagtt
ggccttcgaggcaccatcataggaataaaaggagctaatagagaagctgatgtactgttt
gaagtattatttgatgaagaatttcctggagggttaacaataagatgctcgcctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagctattgtaaaaccacaaccagctgtgcatcactatagctca
agttcatcagtttcctgtgggcatttgggaggcctcaaccattcccctcaatcacttttt
gttcctactcaagtatctgctaaagatgatgatgaattctgcaacatttggcagtcctta
cagggatctggaaagatgcaacactttcagccagctgtacaagagaagggtgcagttcta
cctcaagaaataagccaagtaaaccaacatcataaatctggctttaatgacaacagtgtt
aaatatcagcaaagaaaacatgaccctcacagaaaatttaaagaagagggtaagagtcct
aaagctgagtgttggtcccaaaaaatgtccaataagcagcctaactctggaattgagaac
tttctagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggat
cctccaagtgaagagcatttatcaccacaatcatttgccatgggaacacggatgcttaaa
gaaattctaaaaattgatggctctaacactgtggaccataagaatgaaatgaaacagatt
ggtaatgaaatccctgtttcctctattagaagagatgaatatggattaccctctcagcct
aaacaaaataagaaattagcatcttatgtgaacaagcctcacagtgctcatgagtaccat
aatgttcagtctatggacaatgtgtgttggcctgcccccagccagatccctcctgtatcc
acaccagtaactgaactttctcgaatttgttcccgtgttggaatgccacaacctgatttc
tcctttcttaggacgccgcagacaatgactgtttgccaagtaaaattatctaatggctta
ctgatacatgggccacagtgccactctgaaaatgaagccaaggagaaagctgcacttttt
gctttacaacaattgggctccttaggcgtgaatttccctttgccttcaccagtatttgca
aattatccttcagctgtaccacccggaaccattcctccagtctttcccccacctactggc
tgggatcactatggaagcaactatgcattgggggcagctaatataatgccttcatcatct
catctctttggctcaatgccatggggaccatcagtgccagttcctgggaagcccttccat
catactttatattctgggaccatgcccatggctgggggaatgccagggggtgtgcacaat
cagtttatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgagaat
aaggaagcccagagttctcaagccactccagttcagactagccagccggattcttccaac
attgtcaaagtgagtccacaggagagctcatcagcctctttgaagtcctctcagattgct
caacctgcatcttcttttcaagttgaaacggcctctcaaggccgtagtatatctcaccat
aagtcaacaccaagctcttcttcaagaagaaaatcaagaaaactggctgtcaattttggt
atttctaaaccttctgagtaa
DBGET
integrated database retrieval system
