Capsicum annuum (peppers): 107839037
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Entry
107839037 CDS
T04646
Name
(RefSeq) endoribonuclease Dicer homolog 3a
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cann03036
]
107839037
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107839037
microRNA pathway
RISC loading complex
107839037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
PAZ
SWI2_SNF2
dsrm
DND1_DSRM
DUF2661
Motif
Other DBs
NCBI-GeneID:
107839037
NCBI-ProteinID:
XP_016537862
LinkDB
All DBs
Position
8:complement(49845929..49918761)
Genome browser
AA seq
1651 aa
AA seq
DB search
MEEEKQENPLKRNFEEFSSQVEQMDVDKKKKTEEFIPREYQVKVFKVAMRKNTIAVLDTG
AGKTNIAVMMIREIGKTLMNDDEKKFIVFLAPTVHLVHQQYEVIQHHTHLTVQEYYGAKG
VDDWNAESWKKETDDNDVLVMTPQIFLDALRKGYIKFDSVCFLILDECHRASGNHPYSRI
MKEFYHLSRKRSKVFGMTASPVIRKGVSSSTDCEEQISELESLLDSQIYTLENRVELDEF
VPSAKETSKFYDPIVFLNTELKENLKFSWSKFDAALTDLKLSLPSQYKDTDDMYKKLQKR
LSNCYAKIVCCLENLGIICAYEAVKICLENVADDKDENEILKKSFLQYRYFLEEALSILQ
ESMRQDVGCDSPAILSMGHISSKLQALLEIFKSLGEATQVRCLIFVERIITAKVIERIMK
KMTRFSHFSIAYLTGTNTSVDALTPKVQKETLRSFLSGKVNLLFATDVVEEGIDVPHCSS
VIRFDLPKTVRSYVQSRGRARQSESQYILMLERGNKKQREQMFDIIRSEYSMTETAIKRD
PDDCVVKPCLVKETNAYFVEATGASVTADSSVSLLTKYCEMLPGDKFFSPKPMFEYILSG
EFYRCILTLPPNAAFQTVVGPEGRSTQLSRQLVCLDACKKLHQLGALNDHLLPFNEKPSQ
SDSVVQDKKSGAGTTKLKELHGTACISALSGTWGDDPNGEVYHVYKMNFPCNIEEVKYSS
FILLLQSELDYDVGNVEVELFLVSKFVKSSVTHCGKVHLDAQQVAKAKTFQELFFNGLFG
KLFIKSLDGRKFLLDTKESLWKPSNMYLLLPLDPVDSSCEPYRVDWGGIESSVSVVEFLK
NNAWLSAEKSETKRKNSLVDRTASFVGDLDQTDLIHFANISISRSRLKDMVVVAIHTGRI
YSVLEAVANTSSESPFEVDSEATVSPFSSFADYFHKQYGIVLVYPGQPMLLLKQSHNAYN
LLVDFKKEGISCGPKSKDSTMVVQKPQNNVHMPPELLVCIDIRIDILKSFYLLPSLMHRL
ESLMLASQLRKEISHSGDLHISSSLILEALTTLRCNESFSMERLELLGDSVLKYAVSCHL
FLKYPKKHEGQLTGQRSQAITNSALHKLGTNQHLQGYIRDGAFDPRRWTAPGQLSLRLFT
CEHGVETSEVPLDEKFQTEDKVVVGKHCDRGHRWMGSKTISDCVEALIGAYYVGGGLVAA
LKLMKWLGVKAELEPSLVEDAISTASLYSYTPKAKDIDDLELKLAYKFSVKGLLLEAITH
ATVQELDVGYSYQRLEFLGDAVLDILITWYLYQKHKDIDPGELTDLRSASVNNDNFAYAA
VRSDLHVHLQHRSGYLESEISLFVKSVSNSCSLQGNKAPKVLGDLVESIAGAVLIDTKLN
LDEVWKIFKPLLSPIVTPDKLELPPLRELIELCDSLGYFLKDHCVVKGDSVNAELRLQLK
DELLVAEGSGQTRKNAKAQAALKLLKDLEKKGISSKKRNEETSLVDVPQSLGFDGDICSQ
ANTTCPDMDTCKKQKKICLNLKTEKAQSVQSDCFTSACHSNQDIQAIRPINMRRGGPRMS
LYDLCKKLQWPMPSFESVERKSKSLIECGEGADKRRVYNSFASQISLTIPDYGVIELTGD
ERADKKSSLDSAALCMLYELERQGKIAIANE
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaaaagcaagaaaaccctttgaagagaaactttgaagaattcagtagtcaa
gttgaacaaatggatgtagacaagaagaagaagacagaggagtttattcctagagagtat
caggtgaaggtgtttaaagtggcaatgaggaagaacaccattgctgtgttggatacaggg
gctgggaagaccaatatagcagtgatgatgattagagaaattgggaaaacgttgatgaat
gatgatgagaagaagtttattgtgttcttggcccccactgttcatcttgttcatcagcaa
tatgaggttatacaacatcatacacatcttactgttcaagaatactacggggccaaagga
gttgatgattggaatgcagaatcctggaaaaaagaaactgatgataatgatgttttggtt
atgacaccccaaattttcttggatgctctgagaaagggttacataaaatttgatagtgtg
tgctttctgatactagatgagtgccatcgtgccagtggtaaccatccttattctaggatt
atgaaggaattctatcatctatccagaaagagatcgaaggtttttgggatgaccgcttcc
cctgtgattagaaaaggtgtttcatcttcgacagattgcgaggagcaaatttcagaactt
gaaagtcttcttgattcccagatatatacactcgagaacagggtggagctggatgaattt
gttccttccgcaaaggagactagtaaattctatgatccaatagtgtttttgaatacagaa
ttaaaggaaaatttgaaattctcatggtcaaagtttgatgctgccttgactgacttgaaa
ctgtcactgccaagtcagtacaaagatacagatgacatgtataagaagcttcagaagaga
ttatccaactgttatgcaaagatagtgtgttgccttgaaaatctaggcatcatttgtgct
tatgaggctgttaaaatttgcttggaaaatgtggccgatgacaaagatgaaaatgagatt
ctaaagaaaagttttctacaatatagatactttttggaggaggcattgtcaattctccag
gaatcaatgcgacaagatgttggatgtgactcaccagcaattctgtcaatgggccatata
tcttcaaaactgcaggcgcttcttgaaatttttaaatcccttggggaagctacacaagtg
cgctgtctcatttttgttgaaagaattataacagctaaagtaattgaaagaattatgaag
aaaatgacacggttttcacatttctcaatagcgtatttgactggaacaaacacatccgtt
gacgcactgacaccaaaagtgcaaaaagaaaccttgagatcttttctctccgggaaggtc
aatttattatttgccactgatgtggttgaggagggaattgatgtgccacactgttcctct
gtaatacgatttgatttaccaaagacagttcgtagttatgtccaatctaggggacgagct
cgtcagtctgagtctcagtatatactaatgcttgagagaggaaacaagaagcagagggaa
cagatgtttgatatcattaggagtgaatattctatgacagaaacagctataaagagagac
cctgatgattgtgtggtgaaaccttgtctagtgaaggaaactaatgcatattttgtggaa
gcaactggagcatcagtaactgcagattctagtgtcagtctcttgacgaaatattgtgaa
atgcttcctggagataagttcttctctccaaagccaatgtttgagtacattttgtctgga
gagttctatcggtgtattttgacattacctccgaatgcagctttccaaacagttgttggt
ccagaaggcaggagtactcaattatcaagacagcttgtctgcttggatgcttgtaagaag
ctgcaccagttaggcgctctcaacgatcatcttctacctttcaatgaaaagccttcccaa
agtgattctgttgtgcaggacaaaaaatcaggggcaggaacaacaaagttgaaagaatta
cacgggacagcttgtattagtgcattatctgggacatggggagatgatcctaatggagaa
gtatatcatgtgtataaaatgaacttcccttgcaacatcgaggaagtgaaatattccagt
tttatccttttgcttcaatcagaactagattacgatgtgggaaatgtggaagtggagctc
ttcttagtttccaagtttgtcaaatcttctgtgacgcattgtgggaaagtacatttggat
gcccaacaggttgctaaagcaaaaacattccaagaactattctttaatgggttgtttggt
aaattatttattaaatcattggatggaaggaaatttctgcttgatacaaaagaatctttg
tggaagccatccaacatgtacttgcttctaccgctggatcctgtagattcaagttgtgaa
ccctacagagttgattggggaggaattgaatcttccgtttcagttgtggaatttttgaaa
aataatgcatggttaagcgctgagaaatctgaaactaaacggaagaactccttagttgac
agaactgcatcatttgtgggagatcttgatcaaacagatctgattcacttcgccaatata
tcaatctcaagaagcaggcttaaggacatggttgttgtggccattcatactggaagaata
tattctgttctggaagctgttgccaatacttcctcagagagcccctttgaagtagattcg
gaagctactgtatcgcccttttcatcatttgctgactacttccataaacagtatgggatt
gttttagtgtatcctggacagcctatgctgctactgaagcaaagccataacgcatacaat
cttcttgtggattttaaaaaggaaggcatttcttgtggtccgaagtcaaaagatagtaca
atggtcgttcaaaagccacagaataatgttcacatgccaccagaacttctggtctgtatt
gacattcggatagacatcttgaaatccttctacttgctaccttcattaatgcaccgcctg
gagtccctgatgttggctagccagttgaggaaagagataagtcattcaggcgacttacat
atatcaagctcattgattctggaagctcttacaactctaagatgcaacgagagtttctcc
atggaacgtctggagttgcttggagactcagttctgaagtatgctgttagttgtcacctc
tttcttaaatatcccaagaagcatgaagggcagctaactggtcagcgttcacaggctatt
actaactcagccctccataaattgggaactaatcaacatttgcagggttatataagggat
ggcgcatttgatccacgccgatggactgctcctggacagctttccctacgacttttcact
tgtgaacatggggttgaaacttcagaagtgcctttggacgagaaatttcaaaccgaagac
aaagtagtggtcgggaagcactgtgatagaggacatagatggatgggttcaaaaacaata
tctgactgtgttgaagcgctgataggtgcatattatgttggtggcggtttagttgctgcc
ctcaaattgatgaaatggcttggtgttaaagctgagcttgaaccgtcattagtggaggat
gcaattagtactgcatctttgtattcttatacccctaaagctaaagatattgacgacctt
gagttgaagctggcctataaattttctgttaagggattgctactagaagctataacacat
gctactgtgcaagagctggacgttggttacagttatcagaggcttgaatttcttggcgac
gcagtactggacattctcattacctggtacctttaccagaagcataaggatattgatcct
ggggaactgacagatctgcgttctgcttctgtcaataatgataatttcgcttatgctgct
gtgagaagtgatcttcatgtccaccttcaacatcgttctggatatcttgaaagtgaaata
tcattgttcgtgaagtcagtctctaattcttgttcactccaaggaaacaaagccccaaag
gtacttggagacttggtagagagtattgctggagcagtacttattgatactaagcttaac
ctggatgaagtttggaagatcttcaagccactattgtctcccatcgtgactcctgataag
cttgaactacctccattgcgtgagctcatagaattatgtgactcacttggctactttttg
aaagaccattgcgtggtgaagggggattcagtgaatgcagagcttaggttacagctgaaa
gatgaactgctggtcgctgagggatctggacaaactagaaagaatgcaaaggcacaagca
gctctgaagttactgaaggacttagagaaaaaaggaatttcatccaagaagagaaacgaa
gagaccagccttgttgatgtgccacaatctttaggctttgatggtgacatctgcagccag
gcaaatactacttgtcctgatatggatacatgcaaaaagcaaaagaaaatatgtttgaat
ttaaagacggaaaaagctcaatctgttcagagtgactgcttcaccagtgcttgtcattca
aatcaggacatccaagcaattcggccaatcaacatgagaaggggtggacctcgcatgtca
ctttatgacctatgcaagaaactgcagtggccaatgccaagttttgagtcagtagagcgt
aaatcgaaatcacttattgaatgtggtgaaggcgctgataaaaggagggtttacaacagt
tttgcatctcaaatctctctcactatacctgactatggtgtgatagagcttacgggggat
gaaagagctgataagaaaagttcacttgattcagctgcactttgcatgctgtatgagcta
gaacggcagggaaaaatagccatcgcaaatgaatga
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integrated database retrieval system
