Capsicum annuum (peppers): 107839215
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Entry
107839215 CDS
T04646
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cann04131
]
107839215
Membrane trafficking [BR:
cann04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
107839215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_IFT122_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_VPS8
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WDR55
WD40_Prp19
Beta-prop_RSE1_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
107839215
NCBI-ProteinID:
XP_016538104
UniProt:
A0A1U8E2W8
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Position
8
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AA seq
1125 aa
AA seq
DB search
MYMAYGWPQVIPMESGLCASSQQIVYLKIINRLLLVVSPTHLELWSSSQHRVRLGKYKRS
SDSIHKEGENLQAVWSPDTKLIALLTSSFYLYILKVQFTERKIQIGGKQPTGLVLASITL
LLNEQVPFANSNLTMSNVVCDNKHLIVGLSDGSLYNISWKGEFCGAFDAFDLDVQPRDGS
GVPKLASSLENGLASGGSLSFSKFSHHSSKNSAVIHLEFSLPLRLLVVLFSDGQLVLCSV
SKRGLKQMESIKAEKKLGSGDAVCAAVASDQQLLAVGTRRGVVELYDIAESASLMRSVSL
YDWGYSVEDTGAVSCVAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSASSPV
VKRNQECKYEPMMSGISLMNWDEYGYRLYAIEEGSSERIIAFSFGKCCLNRGVSGTTYVR
QVIYGEDRLLVVQSEDTDELKILHLSLPVSYISQNWPVQHVAASKDGMYLAAAGLHGLIL
YDIRLKKWRVFGDVTQEQKIQCRGLLWLGKIVVVCNYDDSSDGYELLFYPRYHLDQSSLL
CRKPLLTKPMVMDVYQDYLLVTYRPFDVHIYHVKLSGELTPSSCPNLQLSTVRELSIMTA
KSHPASMRFIPDQLPRESVAGNDGLSTSLDLSIREPIRCLILRTNGELSLLDLDEGRERE
LTDSVELFWVTCGQSEEKTSLIEEVSWLDYGHRGMQVWYPSPGADAFKQEDFLQLDPELE
FDREVYPLGLLPNAGVVVGVSQRMSFSACTEFPCFEPSAQAQTILHCLLRHLLQRDKKEE
ALRLAQLSAEKPHFSHCLEWLLFTVFEADISGSKNQSVIPNPSTNSSLLDKTCDLIRNFP
EYFDVVVSVARKTDGRHWADLFAAAGRSTELFEECFQRRWYRTAACYILVIAKLEGPAVS
QYCALRLLQATLDESLYELAGELVRFLLRSGREYEPTTTDSEKLSPRFFGYFLFPSSYRR
QTLESKGSFKEQSAHVASVKNILESHASYLMSGKELSKLVAFVKGTQFDLVEYLQRERYG
SARLDNFASGFELIGQKLQMETLQSRLDAEFLLSHMCSVKFKEWIVVLATLLRRSEVLFD
LFQHDLRLWKAYSITLKTHPSFVDYQDLLESLDEKLSSASNSEET
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcatatggatggccacaggtcatccctatggaatcagggctatgcgcttct
tctcagcaaattgtatacctcaaaatcatcaatcgcttattgcttgttgtttctcctact
catcttgaattatggtcctcctcacagcatagagtgagattgggaaagtacaagagaagc
tccgattcgattcacaaggaaggcgagaatttgcaggctgtttggagtccagataccaaa
ttgatcgcacttcttacctcttccttctatctatacattctgaaggtccaatttacagaa
aggaaaatacaaattggaggcaaacaaccaactggtttggttctagcaagcataactttg
ctcttgaatgaacaggtgccttttgctaacagcaacttgacaatgagcaatgtagtttgt
gacaacaaacatttgatagttgggctttctgatggatctctgtataatatatcctggaag
ggcgagttttgtggggcctttgatgcctttgatcttgatgttcagcctcgtgatggcagt
ggggttcctaaactagcaagttctttagaaaatggtcttgcttctggtgggagtttgtct
ttttctaaattcagtcatcattcttcgaaaaactctgctgtgatccacttggagttttcc
ttacccttaaggttacttgttgtgctattttctgatggacaactggtcttatgttctgtg
agcaaaagaggtctgaagcaaatggagtctattaaagctgaaaagaaactgggctctggt
gatgctgtatgtgctgcagttgcttcagatcaacaactccttgctgttggtaccagaaga
ggtgttgttgagttgtatgacattgcagaatctgcttcgcttatgcgttctgtgtctctc
tatgattggggatattcagtggaggatactggtgctgtcagttgtgttgcatggacacct
gataattctgcttttgcagttgggtggaagttaagaggcctgacagtttggtctgtttct
ggctgtcgcttgatgtccacaattcgtcaaattggcttaagttctgcgtcttctccagtg
gtaaagcgaaatcaggaatgtaaatatgaacctatgatgagcggtatctcattgatgaac
tgggatgaatatggatacagactttatgctattgaggaaggatcttcagagagaattatt
gcattctcttttggaaagtgctgtctgaacagaggagtctctgggactacttatgtccga
caagtaatctatggggaagatcgtttgcttgttgtgcagtcagaagatactgatgaacta
aaaatcttgcatcttagcctaccagtttcctacatctctcagaattggccagttcaacat
gtggctgctagcaaggatggaatgtacttagcagctgctggccttcatggacttatctta
tatgacataagattgaaaaaatggcgagtttttggagatgtcactcaggaacaaaagatc
cagtgcagaggcttgttatggcttgggaagattgttgttgtctgcaactatgacgattct
tctgatgggtatgaattgcttttctatcccagatatcaccttgatcaaagttcattacta
tgtcggaaacctttgcttaccaaaccgatggttatggatgtttaccaagattatctactt
gtcacttaccgaccttttgacgtccatatttaccatgtgaagttgtctggtgaactaacg
ccttcgagttgccccaatttacagctttctacagtacgagagctatcaatcatgactgca
aagagccatcctgcttcaatgcgttttattcctgatcagctcccaagagaaagcgttgca
ggaaatgatggcctatcaacttcgttggatctgtcaatccgagagcctatccgatgctta
atactaaggacaaatggggaactttcacttcttgatttggatgaggggagagaaagagaa
ctcacagactccgtagagttgttttgggttacctgtggtcagtcagaggagaaaacaagc
ttgattgaggaagtttcatggttagactatggccaccgaggaatgcaggtttggtatcca
tctcctggtgctgatgcttttaagcaagaggattttttgcagttggatccggagctggaa
tttgatcgcgaggtgtatcctctgggtttgctgccaaacgctggagttgtagttggtgtc
tcccagcgaatgtcattttctgcatgtacagagtttccatgttttgagccttctgctcaa
gctcagactattttgcattgccttcttcgtcatcttctacagagggataaaaaggaagaa
gctctaagactggcacaattgtcagcagagaagccacatttttcgcactgcttagagtgg
cttctttttactgtttttgaagccgacatttctgggagcaagaatcagagtgtcattccc
aacccttcaacaaattcctcacttctggataagacatgtgatttgattagaaattttccg
gagtactttgacgtggtcgttagtgttgcaagaaagactgatggccggcattgggcagat
ttatttgctgctgctgggagatcgactgagctatttgaggagtgctttcaaaggagatgg
tatcggactgccgcttgctatatactagtaattgctaagcttgaaggtccagctgtaagt
cagtattgtgcattgcgtttgttgcaggcaacattggatgaatctttatacgaattggca
ggggaactggtgaggtttcttctcagatctggacgggaatatgaacccacaactactgat
tctgagaaactatctcctagattctttggatattttctgtttccttctagttaccggagg
caaactttggagtccaaaggttcatttaaagagcagagtgcccatgttgcttctgttaag
aatattttagaaagtcatgcaagctatttgatgtctggaaaagaactgtcaaagctcgtc
gcatttgtgaagggcacacagtttgacctcgtggaatacttgcagcgagaaagatatgga
agtgctcgtttggacaattttgcttcaggttttgaacttattggtcagaagcttcagatg
gaaacattgcaaagtcgtttagatgcagagttccttttgtctcatatgtgctctgtgaag
ttcaaagagtggattgtagtgctggccacacttttgaggcggtctgaggtcttgtttgat
ttatttcagcatgacttgcgcttatggaaagcatatagcattactttaaagacccatcca
tcatttgttgattaccaggacttgcttgaaagtttggatgaaaagctttcatccgcttca
aattcagaagagacatga
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