Capsicum annuum (peppers): 107839620
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Entry
107839620 CDS
T04646
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03018
RNA degradation
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107839620
09123 Folding, sorting and degradation
03018 RNA degradation
107839620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107839620
03041 Spliceosome [BR:
cann03041
]
107839620
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107839620
mRNA degradation factors
5'-3' decay
Lsm complex
107839620
Spliceosome [BR:
cann03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107839620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107839620
NCBI-ProteinID:
XP_016538677
LinkDB
All DBs
Position
8:154235899..154240767
Genome browser
AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGGRGRGRGGRDESAAGRQAKGIGRGM
EDAGAKGRGKGGPGAKSGGKGGGRGRG
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctctttgctcaagactgcacagggccatcccatgttggtggagctaaaa
aatggggagacatataacggtcatttggtgaattgtgatacttggatgaatatccatctt
cgtgaagttatctgtacatcaaaggatggagatagattttggagaatgcctgaatgttat
attcgtggaaataccataaagtatcttagagttcctgatgaggtgattgataaagttcaa
gaagaaacaaaaagtcgtgcagatagaaaaccacctggtgtaggtgggcgaggaagggga
agaggaggtagggatgaaagtgctgctggaagacaggcgaaaggcattgggcgtggaatg
gaagatgcgggtgccaaaggtcggggcaaaggaggacctggtgccaagtctggtggtaaa
ggtggaggccgtggacgtggctaa
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