Capsicum annuum (peppers): 107840253
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Entry
107840253 CDS
T04646
Name
(RefSeq) polyadenylate-binding protein 8 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
cann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107840253
09123 Folding, sorting and degradation
03018 RNA degradation
107840253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107840253
03041 Spliceosome [BR:
cann03041
]
107840253
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107840253
mRNA cycle factors
Stress granule specific factors
107840253
Spliceosome [BR:
cann03041
]
Complex C
Other components
Complex C specific factors
107840253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_occluded
RRM_3
Nup35_RRM
RRM_7
SET_assoc
MARF1_RRM1
dsDNA_bind
ATG11
Motif
Other DBs
NCBI-GeneID:
107840253
NCBI-ProteinID:
XP_016539541
UniProt:
A0A1U8DZF4
LinkDB
All DBs
Position
8:165905213..165913033
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AA seq
645 aa
AA seq
DB search
MAQVQVQQPQAANAGAVNNQFVTSLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTS
QRSLGYGYVNYGNPQDAARALEVLNFTPLNGKPIRIMYSNRDPTVRRSGTANIFIKNLDK
AIDHKALHDTFSTFGNILSCKVAVDSSGQSKGYGFVQYDSEDAAEKAIEKLNGMLLNDKQ
VYVGPFVRKQERDMAVDKTRFTNVFVKNLSEATSEEDLKKTFGEFGVITSVAVMKDEDGK
SKSFGFVNFENAEDAARAVEALNGHKFDNKEWFVGRAQKKSEREMELKHRYEQSAKEAVD
KSQGLNLYIKNLDDSINDDKLKELFSPFGTITSCKVMRDPSGVSKGSGFVAFSTPEEASR
ALSEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPIGMASSVAPRMPMYPPGGPGL
GQQIFYGQPQPAMLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGRRGG
AVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPDVGFPGVGGGMFSIPYDMGGMPMRDA
GLSQPVPVGALASALANASPTEQRTMLGENLYPLVEQLEPDTAAKVTGMLLEMDQTEVLH
LLESPEALKAKVAEAMEVLRNVSQQPSSNPADQLAALSLNDGLVS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggtacaggtgcagcagccacaagctgcgaatgctggtgctgtgaataatcag
tttgtgacgtcgctgtatgtcggtgaccttgatgtgaatgtgactgattcacagctgtat
gatctgttcaatcagcttggacaagttgtttcggttagggtttgcagggatttgactagc
cagaggtcgcttggttatggttatgtcaattatgggaatccacaagatgctgcaagggct
ttggaagtgctgaacttcactcctctcaatggaaagcccatcaggataatgtactcaaac
cgagaccctactgttcgaagaagtggcacagcgaacatatttattaagaatttggacaag
gcaattgaccacaaagcactgcatgataccttttctacatttggaaacattctatcttgt
aaggtagctgtggattcatcaggtcagtccaaggggtatgggtttgtgcagtatgacagc
gaagatgctgccgaaaaagctattgagaaactgaatggtatgctgctgaatgataagcaa
gtatatgttggacccttcgttcgtaagcaagagagagacatggccgtggataagacaagg
tttaccaatgtctttgtgaaaaatttatccgaagcaacatcagaagaagatctcaagaaa
acctttggtgaatttggtgtcattactagcgttgctgttatgaaggatgaagatggaaag
tctaagtcctttggatttgtcaactttgagaatgctgaagatgctgctagagctgttgaa
gctctgaatggtcacaaatttgataacaaagaatggtttgtaggaagagctcagaaaaaa
tctgagagggaaatggaattgaaacatcgatatgagcaaagtgccaaggaggcagttgat
aaatcacaaggtttaaatctgtacataaaaaatttggatgacagcattaatgatgacaag
ctcaaggaattgttctctccgtttggcacaatcacttcatgcaaggttatgagagatcct
agtggggtaagcaaaggatcaggatttgttgcattctcaacccctgaagaggcttcaaga
gcgctctcagagatgaatggaaagatgattgttagcaaacctctgtatgttgcccttgcg
cagcgcaaggaagagagaagagcaaggctacaggctcagttttctcagatgcgtccaatt
ggaatggcatcttcggttgctcctcgaatgcctatgtaccctcctggcggtcctggttta
ggtcaacaaatattctatggccagccacaaccagccatgcttcccccacaagctgggttt
ggatatcagcagcaacttgtacctggaatgaggcctggtgggggacctatgccgaatttc
tttatgcccatggttcagcaagggcagcaaggtcaacgtccaggtggccgacgtggggga
gctgttccattgcagcaaggccagcagcctgttcctctgatgcagcaacagatgtttccg
agggggcgtggctatcgatatcctccaggacgtggccttcctgatgttggctttccagga
gtaggtggtggcatgttctctatcccatacgatatgggtggtatgcctatgcgtgatgca
ggactcagtcaaccagttccggtaggagctttggcttctgctctggctaatgcttctcca
acagagcaaaggacgatgctaggtgaaaatctgtatcccttggtcgaacagcttgaacca
gacacagcagccaaggtaactggcatgcttttggagatggaccagacagaggtactgcac
ttgcttgagtctcctgaagccctgaaagccaaggttgcagaagcaatggaggttctgagg
aatgtttctcagcagccgtccagtaatcccgctgatcagctggctgcattatcactgaat
gatggtctggtttcttaa
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