Capsicum annuum (peppers): 107840343
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Entry
107840343 CDS
T04646
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107840343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107840343
03009 Ribosome biogenesis [BR:
cann03009
]
107840343
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107840343
Spliceosome [BR:
cann03041
]
Complex A
U2 snRNP components
U2 related factors
107840343
Complex B
107840343
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107840343
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
90S particles
Helicases
107840343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
AAA_30
SRP54
T2SSE
FtsK_SpoIIIE
AAA_7
PhoH
TsaE
AAA_29
NACHT
Motif
Other DBs
NCBI-GeneID:
107840343
NCBI-ProteinID:
XP_016539666
LinkDB
All DBs
Position
1:229136755..229142352
Genome browser
AA seq
724 aa
AA seq
DB search
MGTERKRKVSLFDVVDDTATKKANLTLNGGNSMMASSINKWTGKPYSQRFYDILEKRKTL
PVWHQKEEFLQALKSNQTLILVGETGSGKTTQIPQFVLDAVEVETADKRRKYMIGCTQPR
RVAAMSVSRRVAEEMDVVIGEEVGYSIRFEDCTSARTVLKYLTDGMLLREAMADPLLERY
KVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFYGAPLMKVPG
RLHPVEIFYTQDPERDYLEAAIRTVVQIHTCEPPGDILVFLTGEEEIEDACRKITKEIGN
MGDQVGPIKAVPLYSTLPPAMQQKIFEPAPPPVVEGGPPGRKIVVSTNIAETSLTIDGIV
YVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHNDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
MTKLGEIMSEFPLDPQMGKMLVVSPEFNCSNEILSISAMLSVPNCFVRPREAQKAADEAK
NRFGHIDGDHLTLLNVYHAYKQNQEDPQWCYENFINQRALKSADNVRQQLARIMARFNLK
LCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLANFPQCEAKRVLERLYKKREREKDES
KSKK
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgggaacggagaggaagaggaaggtcagtttgtttgatgtggttgatgatacggccaca
aagaaagccaatctaaccttaaatggtggaaacagtatgatggcatcttcgattaacaag
tggactggaaagccttattcacagagattttatgatattttggagaagaggaagactctt
cctgtttggcatcaaaaggaggagtttttacaggctttgaaatctaatcaaactcttata
ctcgttggtgaaactggtagtggtaaaactactcagattccacagtttgttttggatgct
gttgaagtagagacagctgataagcgaaggaagtatatgattggttgtactcaacctcgg
agggtggctgcaatgtctgtgtctcgtcgagttgctgaagagatggatgttgtaattggg
gaagaagttggatatagcattcgttttgaagactgcactagtgctagaactgttttgaaa
tacttgacagatggtatgcttttaagagaagcaatggcagatcctctattggaacgctac
aaggtaattattcttgatgaagctcatgaaagaactttggcaacagatgtcctgtttggg
cttctgaaggaagttttgaaaaacagaccagacctgaagctagttgttatgagtgccaca
cttgaggcagagaagtttcagggttacttctatggtgcacctctcatgaaagttcctgga
aggctccatccggtggaaattttctacactcaggatcctgaaagagactatcttgaggct
gccattcggactgtggtgcagatacacacatgtgaacctcctggtgacattcttgtcttc
cttaccggagaagaggagattgaagatgcatgtcgcaaaatcacaaaagagattggtaat
atgggtgatcaagtgggccccattaaagcagtgcctctttattctacacttcccccagct
atgcagcaaaagatatttgaaccagccccaccaccggtggtggagggtggtcctcccggc
aggaagattgttgtatcaaccaacattgcggagacatctttgacaatagatggcattgtt
tatgtcatagacccaggatttgctaagcaaaaggtttataacccaagggtgcgtgttgag
tctttgttggtgtctcctatttcaaaggccagtgcgcaccaaagatcaggacgtgctgga
cgaacacagccaggaaaatgctttagactttacacggagaaaagtttccataatgatctt
caaccacaaacctatccagaaatacttcggtcaaatttggctaatacagttctaactttg
aagaagttaggtattgatgacctggttcattttgattttatggatcctcctgccccggag
acgttgatgagagctctagaggttttaaattacttaggagcactggatgatgatggaaac
atgaccaagttgggtgagataatgagtgaatttcctcttgatcctcagatggggaaaatg
cttgttgtcagcccagaattcaactgctccaatgaaatcctctcaatatctgcgatgcta
tcagtacccaattgctttgtccggcctagggaggctcaaaaagctgctgatgaagcaaag
aatcggttcggtcacatagatggggatcatttgacgttgctgaatgtgtatcacgcctat
aagcaaaaccaggaggatcctcaatggtgttatgagaatttcatcaatcagagggctctc
aaatcagctgacaatgtgaggcaacagcttgctcgtataatggccaggttcaacctcaag
ttatgcagcacagacttcaacagtcgcgactactatgtgaacataaggaaggctatgtta
gctggttatttcatgcaggttgcacacctagagcgtactgggcattatctaactgttaaa
gacaatcaagtggtacacttgcatccttcaaattgcctggatcacaagccagaatgggtt
atatataacgaatatgtcttaacaagcaggaatttcattcgcactgtgactgatatccgg
ggtgaatggttggttgatattgcaccacactactatgaccttgcaaattttccacaatgt
gaggcaaaacgtgtgcttgaacggttatacaagaagcgggagcgagaaaaagatgaaagc
aagagcaaaaaatga
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