Capsicum annuum (peppers): 107842305
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Entry
107842305 CDS
T04646
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03020
RNA polymerase
cann03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107842305
09124 Replication and repair
03420 Nucleotide excision repair
107842305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107842305
03400 DNA repair and recombination proteins [BR:
cann03400
]
107842305
Enzymes [BR:
cann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107842305
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
107842305
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
107842305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
107842305
NCBI-ProteinID:
XP_016541552
LinkDB
All DBs
Position
9:188854089..188862411
Genome browser
AA seq
1198 aa
AA seq
DB search
MYGEREYGDHENVDEEREMMDEEDESHEITQDDAWAVISAYFEEKGLVRQQLDSFDEFIQ
NTMQEIVDETADIEIRPESQHNPARQSDFVETIYKIKFTQIYLSRPMMTESDGETNTLFP
KAARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNL
SEKDLTELGECPYDQGGYFIVNGSEKVLIAQEKMSSNHVYVFKKRQPNKYSYVAEVRSIA
EGQNKAPSGMFVRMLSRSNSKGASGQYIRATLPYIRAEIPIIIVFRALGFVADKDILAHI
CYDFNDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGSTVGFTREKRIKYAKEILQREML
PHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLF
RKLTRDVRSYVQKCVDGGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQV
LNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALM
VYITVGSAANPILEFLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQ
LRRQVDVNTEVGVVRNINLKELRLYTDYGRCSRPLFIVEKKKLIIKKKDIVTLQMRESSE
DSGWHDLVAKGFIEYVDTEEEETTMIAMTINDLTNARLHPDDAYSDTYTHCEIHPSLILG
VCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME
HLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLV
KEDFRRPDRENTMGMRHGNYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQPARY
TRKDHSTSLRHSETGIVDQVLLTTNADGLRFIKIRMRSVRIPQIGDKFSSRHGQKGTIGM
TYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGKEGDATPFTDVTV
DSISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQ
ILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCQQCGLIAIA
NLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRMLTKERKPSSGKKATG
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgtatggagaaagagaatatggagatcatgagaatgtggacgaagaaagagagatgatg
gacgaagaagacgagtcacatgagataacacaggacgatgcatgggcagttattagtgca
tatttcgaagagaagggacttgttaggcaacaattggattcatttgatgaattcatacag
aatacaatgcaagaaattgttgatgaaactgctgatattgagattcgtcctgaatcacag
cataatcctgctcgtcaatctgatttcgttgagacaatatataagatcaagtttactcag
atatacctgagtagacctatgatgacagagtctgatggagagactaatactttgtttcca
aaggctgcacggttaaggaacttaacatactcgtctcccttatatgttgatgtgaagaag
gaagtaataaagaaaggtcatgactacgaagaagtcacggaaaatcaggaatttaccaaa
gttttcattggaaaggttcctataatgcttcgatcaagctattgcagcttgtataaccta
tcagagaaagatttaactgagttgggagagtgtccgtatgatcaaggtggatacttcatt
gtcaacgggagtgagaaagttctgattgcacaggagaaaatgagcagtaatcatgtatat
gtattcaagaaaagacagccaaacaagtattcttatgtggcagaagttcggtctatagcc
gagggccaaaacaaagcgcctagcggcatgtttgttaggatgctttctaggtctaattcc
aagggagcctctgggcaatatattcgtgccactcttccatacatacgggctgaaattcca
attataattgtcttcagggcattaggatttgtcgctgacaaggatattttggcacatatt
tgttatgactttaatgacacacaaatgatggaattacttcgcccttccttggaagaagct
tttgtgattcaaaatcagcaggtggcacttgactatattggcaaaagaggatctactgtt
ggtttcacaagagaaaagagaatcaagtatgccaaagagattctccaaagggaaatgctt
ccgcatgttggtactagagagtattgtgaaactaagaaggcctactattttggctacatc
attcatcgtctcttactctgtgtactgggacgaaggcctgaagatgatagggatcattat
gcaaataaaagactggatcttgctggacctttacttggtggcttatttagaatgctattt
aggaagctaacaagggatgtgagatcctacgttcaaaagtgtgttgatggtggaaaggat
gtcaatttgcaatttgcgattaaagcaaaaacaattacaagtggacttaagtattctctt
gctaccgggaactggggacaagcaaatgctgctggtaccagggcaggagtttcacaggtt
ttgaatcgtttgacatttgcatctactctttctcacttgcgtagattgaactcaccaata
ggacgggagggtaaattggcaaaacctagacagcttcataactctcattggggaatgatg
tgtccagcagaaactcctgaaggacaagcatgtggactcgtaaagaaccttgctttaatg
gtgtacataacagtaggatcagcagcaaatccaattttggaatttttagaggagtggagt
acagagaattttgaggaaatatctcccgcggttattccccaatctaccaagatttttgta
aatggttgttgggttggcattcatcgtaatccagatctgttggttaggacattgagacag
ctgaggagacaggttgatgttaatactgaagttggagttgtccgtaatataaatttaaaa
gaactgcggctatacacagattatggacgttgtagtaggccattattcatcgtggagaaa
aagaaattgataataaagaagaaggatattgtcacactgcagatgagggagtcatctgaa
gattcgggctggcatgatcttgtggcaaaaggatttattgagtatgttgataccgaggaa
gaagagactacaatgattgcaatgaccataaacgatcttacaaatgcaaggctgcaccct
gatgacgcttattctgatacctacacacactgtgaaatccatccatctttgatattgggg
gtgtgcgcttcaatcataccatttccagatcataaccagtcccctcgtaacacatatcaa
tccgctatgggaaagcaagcaatggggatttatgtcaccaattaccaatttcggatggat
acattggcctatgtactgtattatccacagaagcctctcgttactacacgggctatggag
catttgcatttcaggcagcttccagctggcattaacgctattgttgccattacctgctac
tctggctataaccaagaagattctgtcatcatgaatcagtcttcagttgaccgcggcttc
ttccgctctctattttttcgttcatatagggatgaagagaaaaaaatgggaacgcttgtt
aaagaggattttcggcgtcctgatagagaaaatacaatgggaatgcgacacggaaactat
gataaattagatgatgacggatttgcacctcctggaacaagagtttccggtgatgatgtc
ataattggaaagaccacacccatttctcaagatgatgctcaaggacaaccagcaagatac
acccgcaaagaccatagtactagtctacgacatagtgaaactggaattgtggatcaggtt
cttttgacaacaaatgcagatggattgagatttatcaaaataaggatgagatctgtaaga
attccccagattggagacaaattcagtagcaggcatggacaaaaaggaaccataggaatg
acttatacacaagaagacatgccatggtccgctgaaggtatcacccccgatatcatcgtt
aatccacatgccatcccttctcgtatgacaataggtcagctagttgagtgtatcatgggg
aaggttgctgctcatatgggaaaagaaggagacgccacccctttcactgatgttactgtg
gatagtatcagcaaagctctacacaagtgtggttatcagatgcgtggttttgagaggatg
tataatggtcatacaggccgtatattgacagcaatgatattcttggggccaacttactac
cagagactgaagcacatggtggatgataagattcattctcgtggccgtggtcctgtgcag
attctcactaggcagcctgctgaagggagatctcgcgatggaggactacgatttggggag
atggaacgtgactgtatgatagctcatggagctgcacacttccttaaagagaggctgttt
gatcaaagcgatgcttacagagttcacgtatgccagcaatgtggtttaatagctattgct
aatctgaaaaagatgtcattcgagtgcagatcttgtagaaataaaactgacaatgttcag
gtgtatattccttatgcctgcaagcttctgattcaagagctcatgtcaatggcaattgca
ccaagaatgcttacaaaggaaaggaaaccatcaagtggaaagaaagcaaccggatag
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