Capsicum annuum (peppers): 107842598
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Entry
107842598 CDS
T04646
Name
(RefSeq) uncharacterized protein LOC107842598 isoform X1
KO
K06100
symplekin
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107842598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107842598
03019 Messenger RNA biogenesis [BR:
cann03019
]
107842598
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107842598
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107842598
U7-dependent histone pre-mRNA processing factors
107842598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
107842598
NCBI-ProteinID:
XP_016542019
LinkDB
All DBs
Position
9:complement(74523405..74557624)
Genome browser
AA seq
1320 aa
AA seq
DB search
MVRMMSPISKERITSLLNAAKFASDVPSKLHSLRRLKDELSGADAPLLSEFFPSLLDLVS
DRFSPVRKLTAEMIGYIGFKHGEFLPDIVPVLISALKDDTPAVARQAITCGIDIFRCTLV
KVAIQGLFSSELDDSLESAWAWMLKFREEIYAMAFQPASDGRRLLALKFVESVVLLYTPD
PSVSSEPPPALDIEGKFEQFNVSWLRGGHPVLNVGDLSVEASQSLSLLLDQLRFPAVKTI
TNLMIIVLINCLSAIATKRPAFYGRILPVLLSLNPSSSDSNEKHVSGVYHALKTAFISCL
NCTHPGAAPWRDRLEGALREKKAGVQAEPVVSQDSQDNGHIELKDFSSISEDSKPSIRSS
AGTKRPGVEDNAELIDDNLSKKRMRSAPIVSKVPKQELSGNQERVSTGGSTTIRSDGDNV
NLQPLVAMFGTLVAQGEKAAASLDILISSISADLLADVVMANMRNLPSNQPKVDADEEPP
LKPEIESNLRQLSSLLADSVSQSSMLAEKDERYDQSLVSIEPELQQIKGGEQHLDSVTTN
VTSDALNYASDQAPDYVTEPLSSTKIIPVLMENDVSAVQSDDADIENAEDSIPGLDSVAR
KVESSELVAVSAFGPTELEDGSQDQGSSLVRSSLEVGPSNSTDRSEELSPKEAVTDVTSV
NSSKATATSTGISPVLLLPKLSAPVINLSDEQKDNLQKSAFARVVDAYKQIAIAGGSQVR
FSLLAYLGVEFPSELNPWKFLQTHILSDYMNHEGHELTLRVLYRLYGHAEEDQDFFSSTA
AASVYETFLLTVAETLRDSFPASDKSLSRLLGEAPHLPNSTLKLLESFCCPGSSEKDEKE
LHSGDRVTQGLSTVWNLILLRPPMREACLKIALQSAVHHLEEVRMKAIRLVANKLYPLTS
ISQQIQLFANEMLMSVSTVGHKADSNGDGSDPALQKDAASEKPSEEGPSFSVSSNTLQSS
TSGNKSPFSISEGQRRISLYFALCTKKHSFFGQIFVVYSGASEAVQKAIHQQIPMLVRTI
GSSSELLEIISDPPSGSEKLLMQVLQTLTEGIVPSVQLITTIRKLYETKVKDVELLIMIL
PFLLKDEVLLLFPHVVNAPLEKFQGALPRILQGSTHSGPVLTPAEALIAIHKIDPEKEGI
PLKKVTDACNACFEQREIFTQQVLAKVLNQLVEQIPLPLLFMRTVIQAIGAFPSLVDFIM
EILSRLVSKQIWKYPKLWVGFVKCALLTRPQSFGVLLQLPPAQLENALGRTPGLKAPLVS
HASQAHVKSSLPRSVLVVLGIESDAQVSSRAPPNQSQTGDIGNSDKETGAEKSRDSSIVG
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggtgagaatgatgtctccgatatccaaagaaagaataacgagtctactcaacgctgcc
aagttcgcttccgacgttccgtcgaaacttcacagcttgcgtcgactcaaagatgaactc
tccggtgctgacgctcctttgctgtctgaattctttccttctctccttgaccttgtttcc
gaccgttttagtccagttcgtaaattaaccgctgagatgattggttatattggattcaaa
cacggagaattcttacctgatattgtacctgtgttgatctctgccttgaaggatgatacc
ccagctgttgctcgacaggcaatcacttgtggaattgatatatttcggtgtactctagtc
aaagttgcaatccagggcttgttttcaagtgaattggatgattctcttgaatcagcatgg
gcctggatgctgaagtttagggaggaaatatatgcaatggcctttcagcctgcaagtgat
ggaagaaggttgcttgcactgaagtttgtggaatcggtcgtgctactttacacacctgat
cctagtgtcagttcggagccaccacctgctttagacattgaagggaagtttgaacaattc
aatgtatcgtggcttcgtggaggtcatcccgttctaaatgttggggatttgtctgttgaa
gcaagccaaagtttgagtttattgcttgatcagcttagatttcctgcagtgaagacaatt
actaacttgatgatcattgtgcttattaactgtctttcagcaattgctactaaaaggccg
gctttttatggtcgtattctgccagttctacttagcctgaatccttcaagctctgacagc
aatgagaagcatgtttctggggtataccatgctttgaagactgcgttcatttcttgcttg
aattgtacacacccaggagctgcaccgtggcgggatcggctagaaggtgcactccgtgaa
aagaaagcaggagttcaggcagaaccagttgtaagccaagattcccaggataatggacac
atagaattgaaggatttttcatctatctcagaggattcaaagccttcaattagatcgtct
gctgggacaaaaaggccaggagtggaggacaatgctgaactgatagatgataatctctct
aagaagcgcatgcggtcggcgcctattgtctccaaggtaccaaagcaagagttaagtggg
aaccaggagagggtttcaactgggggttccacaacaatcagatctgatggagataatgtt
aatttacaaccacttgttgcaatgtttggtacattggttgcccagggggaaaaggctgca
gcatcactagatattttaatctctagcatatcagctgatttgctagctgatgttgtgatg
gctaatatgagaaatctaccttcaaatcagccaaaagttgatgctgatgaagagccacct
ctgaagccagagatcgaatctaatcttagacaattgtcatcactgttggcagactctgtt
tctcagtccagtatgttagcagaaaaagatgagagatatgatcaaagtttggtctccatt
gagccagagttgcaacaaattaaagggggagaacagcaccttgattctgtcactactaat
gttacatctgatgccctaaattatgcaagcgatcaagcaccagattatgtaactgagcct
ctttcttctacaaagattatacctgtactaatggaaaatgatgtctcagcagtgcaatct
gatgacgctgacattgagaacgctgaggattccatacctggtctagattctgtagctcgc
aaagttgaatcatcagagcttgttgctgtttcagcatttggtccgactgaacttgaggat
gggagccaagatcaagggtctagtttagttaggtcatctttggaagtaggtccatcgaat
tcaactgataggtcggaggagcttagtccaaaagaagcagtaacagatgtaaccagtgtg
aactcatcaaaggcaacggctacttctactgggatttctccggtgttgcttctacccaaa
ctatctgctccagtcatcaacctctctgatgaacagaaggacaatttgcagaagtcagct
ttcgctcgtgtcgttgatgcttacaagcaaattgcaattgccggaggttctcaagtccgc
ttttctcttcttgcctatttaggtgttgagtttccttcggagctaaacccttggaaattt
ctgcaaacacatatattgtccgattatatgaatcatgaggggcacgagttgacattgcgt
gtcctctacaggttgtatgggcatgctgaagaagaccaggattttttttcttcaacagcc
gctgcatctgtatatgaaacatttctacttacagtggcagaaacacttagagattctttt
ccagcttctgacaaatctctaagtagattgcttggtgaagctcctcatttaccaaattct
actctcaagctcttagagagcttctgttgtcctggtagttctgaaaaggatgagaaggag
ttgcatagtggtgaccgagtcactcaaggcctcagtactgtgtggaacctgattctgctg
agacctccaatgagggaagcctgcctcaaaattgctttgcagagtgctgttcatcacttg
gaagaggtgcgcatgaaggcaatacggctggttgccaacaagctttatcctctgacatct
atctctcaacaaatacaactttttgccaatgaaatgttgatgtcagtttcaactgttggt
cataaagcagactcaaatggtgatggatctgatcctgcattgcagaaggatgccgcttca
gaaaaaccctcagaagaaggaccatcattttctgtttcctctaacactcttcagtcatcc
acttctggaaacaaatcaccattttctatatctgagggtcagcggcgcatatcgctctat
tttgcactgtgtactaagaagcactcattctttggccaaatatttgttgtatatagtggt
gcatccgaggctgtacagaaggcaatacatcaacaaatccctatgctagttcggacaatt
ggttcttcgtctgagctacttgaaataatatcagatccacctagtggaagtgaaaagcta
ttgatgcaggttttgcaaacgttgactgaggggatagttccttctgtacagttgataact
actatcaggaagctatatgagactaaagtaaaggatgttgaactccttattatgatactt
cctttcctgttgaaagacgaggttttgcttctttttccacatgttgtgaatgctccattg
gagaaattccaaggtgctctccctcgtattctgcagggatcaactcactcgggtccagtg
ttaacccctgctgaagcattaattgctatccataagattgatcctgaaaaagaaggcatt
ccactaaagaaggtcacagatgcatgcaatgcttgttttgagcagagagagatattcacg
cagcaagttcttgcaaaggtcttgaaccaattggttgaacagattcctcttcctttgttg
ttcatgcggacagtaatacaagctattggtgcgtttccatctctggtggatttcatcatg
gagatcctctctcgtcttgttagcaagcagatatggaaatatccaaagctgtgggtagga
tttgtgaagtgtgcccttttgaccaggccacaatcttttggagtgctgcttcagctacct
ccagctcagcttgaaaatgcattgggtagaacccctggtcttaaagctcctttagtctca
catgcaagtcaagcacacgtaaaatcttcacttccaaggtctgttttagtggttcttgga
attgaatcggatgctcaagtttcaagtcgggcacctcccaaccagtctcagacaggtgat
attggcaattctgataaggaaactggcgctgaaaaatccagggactcttcaattgtcggt
taa
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