Capsicum annuum (peppers): 107842728
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Entry
107842728 CDS
T04646
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107842728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cann03041
]
107842728
03009 Ribosome biogenesis [BR:
cann03009
]
107842728
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107842728
Spliceosome [BR:
cann03041
]
Complex A
U1 snRNP components
U1 related factors
107842728
Complex B
107842728
Ribosome biogenesis [BR:
cann03009
]
Eukaryotic type
Pre-60S particles
Helicases
107842728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
CREG_beta-barrel
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
Gsf2
Motif
Other DBs
NCBI-GeneID:
107842728
NCBI-ProteinID:
XP_047252848
LinkDB
All DBs
Position
9:complement(91309066..91356313)
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AA seq
272 aa
AA seq
DB search
MRNLPEKHQTLLFSATMPAEIEALAQDYLFNPVRIKVGKVSSPTANVSQTLEKVPENDKI
DRLLDLLVEEAAQAEKSGHPFPLTIVFVERKTKCDEVAEALMQQGLLATALHGGRSQNER
EAALREFRHGPINILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGRAGSTGR
AASFYTDRDMYLVAQIRRAIADIGSGNDVTIAMGKTARRKEREAAAAQKEARCELSKLSL
VGSTVNVEDNYRHMIAPSMIKKEGAADDAWDD
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaatcttccggaaaagcatcagacactgctcttcagtgccaccatgccagcagaa
attgaggcattggcacaggattacttgtttaatcctgtgcgcataaaagttggaaaagta
agcagcccaactgcaaatgtttcccagactttagagaaggtacctgaaaatgacaagatt
gatcgacttttggatttgctggttgaggaggctgctcaagctgaaaagtctggccatcct
ttccctttgaccattgtatttgtggaacgaaaaacaaaatgtgatgaagtagcagaagct
ttaatgcagcagggtttgcttgcaactgcacttcatggtggtcgtagccaaaatgaaaga
gaggctgcccttcgtgaattcagacatggacctatcaatatcttggttgctactgatgtt
gcgtctaggggattggatgtcacaggagttgcacatgtaattaacctagatctcccaaag
actatggaagactatgtacaccggattggaaggactggtcgggcaggatcaacaggccga
gctgcttcattttacactgatcgtgatatgtatcttgtggcgcaaataagaagagcaatc
gctgatattggttccggcaatgatgtgaccattgctatgggaaagactgcaagaagaaag
gagagagaagctgctgctgcgcagaaagaagcaaggtgtgaactgtctaaactctcttta
gtagggtccacggtcaatgtggaggataattataggcacatgattgccccatcaatgatc
aaaaaggagggagctgcagatgacgcttgggatgactga
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