Capsicum annuum (peppers): 107843756
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Entry
107843756 CDS
T04646
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
cann
Capsicum annuum (peppers)
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107843756
03036 Chromosome and associated proteins [BR:
cann03036
]
107843756
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107843756
Chromosome and associated proteins [BR:
cann03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
107843756
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HTH_44
Tex_central_region
HHH_9
HHH_3
SH2
OB_PDCD11
S1_RRP5
Motif
Other DBs
NCBI-GeneID:
107843756
NCBI-ProteinID:
XP_016543629
UniProt:
A0A1U8EIC5
LinkDB
All DBs
Position
10:216105541..216116951
Genome browser
AA seq
1641 aa
AA seq
DB search
MAGKNVISDDEDEVGIEEEERDEEPVDGDAVDEREDEDEDEEEEGQDEYEKDGFIVDDVE
EEEDEEDEADSDDERQKKKKRKKRESERNYVLDEDDYELLQESNIAVPRPKLESKKFKRL
KKAQRDMEDEGSGFYEEEEFDETGRRGRTAEQKLERSLFGDDEGPPLEDIAEEEERLDEE
EDADIGEEDEMADFIVDEEEVDEHGAPIRRKKVNKKKSRQAPGVSSSALQEAHDIFGDVE
ELLMRRKQDRAKSGMHDESGEWSERRLEDEFDPTILAEKYMTEKDERIRQRDVPERMQIS
EESTGPVPVETIRVEESNWIYNQLAAGVVPLFKKKDSGTTEEQNELPIDKDDILRFLDLM
HVQKFDVPFITMYRKEECMSLLKNPEEHETSDDGSNDSDKKPAVRWHKVLWAIQDLDRKW
LLLQKRKSALDLYYKKRFQEESRRVYDETRLKLNQQLFESITKSLQAAESEREVDDVDSK
FNLHFPPGEVGVDEGQYKRPKRKSQYSICSKAGLWEVASKLGYSAEQFGLQMTREKMEDE
LEDAKEPPEEMASNFTCAMFETPQAVLKGARHMAAVEISCEPSVRKHVRGLYMANAEVST
SPTPDGNAVIDSFHRFAGVKWLRGKPLSKFEDAQWLLIQKAEEEKLIQVTIKLPEPVLNQ
LTSESEVHFLSDGVSKSAQSWNEQRKLILEDAFFNFLLPSMEKEARSLLTSKAKNWLLME
YGNVLWNKVSVGPYQRRENDLGSDEEPAPRVMACCWGHGKPATTFVMLDSSGEVLDILYA
GSLSLRGQNVNDEQRKKNDQQRLLKFMMDHQPHVVVLGAVNLSCTRLKEDIYEIIFKMVE
DNPRDVGHEMDNLNIIYGDESLPHLYENSRISADQLPTQTGIVRRAVALGRYLQNPLAMI
ATLCGPGKEILSWKLNTLESFLTPDEKYGVVEQVMVDVTNQVGIDLNLAISHEWLFAPLQ
FISGLGPRKAASLQRSLVRQQTIFTRKDLLTEHHLGKKVFVNAVGFLRVRRSGYTANSST
YIDLLDDTRIHPESYSLAQELAKDIYLRDMGEEDNDDDEVLEMAIEHVKEKPHLLRSVNA
YGYAEEKKRENKRETLNGIKLELMQGFQDWRRKYVEPSQDEEFYMISGESEETLSEGRIV
QATVRRVQPQKAICALECGLTGILTKEDSSDDWRDVNDLTEKMREGDILSCRIKSIQKNR
YQVFLSCKENDMRNNRYQNNQNLDPYYHEDRTSLQNEKEKARKEKELAKKHFKPRMIVHP
RFQNITADEAMELLSDKEPGESIVRPSSRGPSFLTLTLKVYDGVYAHKDIVEGGKEHKDI
TSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFKTGTKAEVDELLKIEK
SEYPMRIVYSFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEEIDRLVAYF
QRHIDDPHDSGPSIRSVAAMVPMRSPASGGSSGFGGGWSGSSNDSGRRGGRSGDRDRSSG
PGRNDYRNRSNQDDQSGLPPRPYGGRGRGRGRGRGRGRGNNDNDGQDSDYGSQKWSSKEG
EGGGWGEVQNSPARDSWGGSGGGGSGDGGGWGASPSGGGSGGWGASPSGGGGGSSWGQDN
GVQSEDSGWGSGKKSGGSGGW
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaaatgtgatctccgatgatgaagatgaagttggaattgaggaagaagag
agggacgaagagccggttgatggggatgcagttgatgaacgggaggatgaggatgaagac
gaagaagaagagggtcaggatgaatatgagaaagatgggtttatagtagatgatgtagaa
gaagaagaggatgaagaggatgaagctgatagtgatgatgagaggcaaaagaagaagaaa
aggaagaaaagggagtcagagaggaattacgtgcttgatgaagatgattatgaacttctc
caggaaagtaatattgcggtgcctcgtccaaaacttgagagcaaaaaattcaagcggttg
aaaaaggctcagagggatatggaagatgagggttctggtttttatgaggaggaggagttt
gatgaaactgggagacgagggcgtacagctgagcagaagctcgagcgcagcttatttggt
gatgatgaagggccaccactcgaggatattgctgaggaggaagaaaggctggacgaagaa
gaggatgctgacattggcgaggaagatgaaatggccgactttattgttgatgaagaagaa
gttgacgaacatggtgctcctattagaaggaagaaggtgaacaaaaagaagtccaggcag
gcaccaggagtgtcgtcctctgctctccaggaagcccatgacatatttggcgatgttgaa
gaacttttaatgcgtcgaaaacaagatagggcaaaatcgggcatgcacgatgagtccggt
gaatggagtgaaaggagacttgaagatgaattcgatcctactattctagctgagaagtat
atgactgagaaggatgagcgcatccgacaaagagatgtcccagaaagaatgcagatatct
gaggaaagcactggtcctgtgccagttgaaaccattagagtggaagagagtaactggatc
tacaatcagcttgctgctggggttgtgcctctttttaagaagaaagatagtgggacaact
gaagaacagaatgagctgccaatagataaagatgacatactgagatttcttgatttaatg
cacgtgcagaagtttgatgtcccattcatcaccatgtaccgtaaggaggaatgcatgagc
ttattaaagaatccagaagagcatgaaactagtgatgatggctccaatgattctgacaaa
aaacccgccgtaagatggcataaggtgctttgggcaatccaagatttagaccggaagtgg
ctcctccttcagaagcggaagtctgcgcttgatttgtactataagaagcgctttcaagaa
gagtcccgtagggtgtatgatgaaacacgtctaaagttgaatcagcagctctttgaatcg
attaccaaatcactccaggcggctgagtcggaaagagaggttgacgatgttgactcaaaa
tttaacttgcacttcccgcctggagaagttggtgtggatgaaggacaatataagaggcca
aagaggaaatcgcaatacagtatttgcagcaaagccggcttatgggaagtggcaagcaag
ttgggatacagtgccgagcaatttggtttacagatgactcgagaaaagatggaggatgag
ctggaggatgccaaggaaccaccagaagagatggcatcgaacttcacctgtgcaatgttt
gaaacaccgcaagctgtgcttaaaggcgctagacacatggctgcagtagagataagctgt
gaaccaagtgtccgtaaacatgtgcgtggtctctatatggccaacgccgaagtatcaaca
agtcctactcctgatgggaatgcggtgattgattccttccatcgatttgctggagtcaag
tggttacggggtaaacctctctccaaatttgaggatgcacagtggcttctcatacagaag
gctgaagaagagaaactcatccaagttactatcaagctgcctgaacctgttcttaaccaa
ctgacgtctgagtctgaagttcattttctcagtgacggtgtgagtaaatctgctcagtca
tggaacgaacagagaaagttaatacttgaggatgcatttttcaactttcttctaccttcg
atggaaaaggaagcaagatccttgttaacaagtaaagcaaagaactggctgcttatggaa
tatggaaatgttttatggaataaagtgtcagtggggccatatcaacgcagagaaaatgat
cttggctccgatgaagagcctgcacccagggttatggcttgctgttggggccatggaaag
cccgcaaccacttttgtgatgttggattcgtcaggagaggttttggatatcctatatgct
ggatctctcagccttcgtggacagaatgttaatgatgagcagcggaagaaaaatgaccag
cagagactgttaaaattcatgatggaccaccagccacatgttgtggtgctgggagctgta
aatctttcttgtacacggcttaaggaggatatttacgagattattttcaaaatggtggag
gataatccaagagatgttggtcatgagatggataatctgaacataatatatggagacgaa
tcccttccgcatctctatgagaattcccgcatttctgctgaccagcttcctacacagaca
ggtattgtgaggcgtgctgtggcattgggacgttatcttcaaaatcctttagcaatgata
gctacattatgtggacctgggaaggaaattttatcttggaagctgaatactttagagagc
tttctcacaccagatgagaagtacggggtggttgaacaggttatggtggatgtaactaac
caggtgggtattgaccttaatttggctataagtcatgaatggttatttgccccgctgcaa
tttatttcggggctgggtcccagaaaggcagcatctcttcaaagatccttggtaagacag
cagacgatcttcactaggaaggatctcttaactgaacatcatcttggtaaaaaggtattt
gtcaatgcagttggcttcttgcgagtacggcgcagtggatacactgcaaatagcagtaca
tatattgatttgttggatgatacaaggatccacccagaatcctatagtcttgcacaggag
ttggcgaaagatatttatcttagagacatgggtgaagaagataacgatgatgatgaagtg
cttgaaatggcaatagagcatgttaaagagaagccacatctgttgaggtcggttaatgct
tatggatatgctgaagagaagaagcgtgaaaataaaagggaaacccttaacggtataaaa
ttggagctaatgcaagggtttcaagattggcgtagaaagtatgtggagccaagccaggat
gaagagttctatatgatttctggtgagtctgaggagacgctttccgagggaagaattgtg
caggcaacagttcggcgggttcaaccacagaaagctatctgtgctcttgagtgtggacta
accggcattcttaccaaggaggattcttcagatgattggagagatgtcaatgatttgact
gaaaaaatgcgtgaaggtgatatcttaagttgcagaatcaagtcaatccaaaaaaatagg
taccaggttttcctgagttgtaaagagaatgatatgagaaataataggtatcagaataat
cagaacttggatccatattaccatgaagatcgcactagtttacagaatgaaaaggaaaaa
gctcgtaaagaaaaggagcttgcgaagaagcatttcaaaccaaggatgatagttcatcct
cgattccaaaatataacagcagatgaagcaatggagttactctcggacaaggaaccaggt
gaaagtattgtacgtcccagctcacgcggaccatcgtttttgaccctaacgctcaaagtg
tatgatggtgtttatgctcacaaggatattgtggaaggtggaaaggaacataaggatata
acaagcttgctgcgtatcgggaaaacattgaaaataggagaagatacttttgaagattta
gatgaggtgatggatcggtatgttgatccattagtagctcatttgaaggcaatgctaaat
taccgcaagtttaagacgggaacaaaggcagaagttgatgagcttttgaaaattgagaaa
tctgagtaccctatgaggattgtctatagctttggtatttctcatgaacaccctgggaca
ttcattttgacttatatacggagttccaacccacaccatgagtatgttggtctgtacccg
aaaggatttaaattccgtaagaggatgttcgaagaaattgatcgccttgtggcatatttt
caaagacatattgatgatcctcatgactctggaccatcaatacgatcagttgcagcaatg
gtgcctatgcgcagtcctgcaagtgggggatcctcaggatttggtggcgggtggagtggt
tcatccaatgatagtggtcgaagaggtggtcgatctggtgacagagataggtcttcagga
ccaggtagaaatgactacagaaatagaagcaatcaggatgatcaaagtggattgccacca
aggccctacggtggtcgtggacgtggacgtggtcggggtcggggacgtggtagaggaaat
aatgataatgacggacaagattcagattatggctctcaaaagtggagttctaaggagggg
gaaggaggaggttggggtgaagtccaaaattcacctgccagggactcttggggtggtagt
ggtggaggtggtagcggagacggaggtggttggggtgctagtcctagtggtggcggtagt
ggtggttggggtgctagtcctagtggtggtggtggtggaagcagctggggacaggacaat
ggtgttcagtctgaggattctggctggggtagtggtaagaagtccggtggcagtggaggg
tggtga
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