Capsicum annuum (peppers): 107843779
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Entry
107843779 CDS
T04646
Name
(RefSeq) LOW QUALITY PROTEIN: nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107843779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cann03019
]
107843779
Messenger RNA biogenesis [BR:
cann03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107843779
mRNA cycle factors
Common to processing body (P body) and stress granule
107843779
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107843779
NCBI-ProteinID:
XP_016543657
UniProt:
A0A1U8E8Y3
LinkDB
All DBs
Position
10
Genome browser
AA seq
977 aa
AA seq
DB search
MAIQMNNSLDHSSRERVQRLFNKNVELDNKRRRAAQARVPSDPNTWQQMRENYEAIILED
HAFSEQHEIEYALWQLHYRRIEELRARFNAAITSTGSTTSQTGKGPPRNGPDNITRIRMQ
FKTFLSEATGFYHDLIVKIRAKYGLPLGGFPDDPGNHIPPSNDANKSIEVKKGLISCHRC
LIYLGDLARYRGLYGEGDSKSRDLAAASSYYLQASSLCPSSGNPHHQLAILASYSSDELV
AIYRYFRSLAVENPFPTARDNLIIAFEKNRLCYSQLPGDSKASAIKAAPSRTTGKGRGKY
EMRQSLKDEKVEASISKENTSNISEIFKTFSTGFVRLNGILFTRTSLETFEEVLLMVKND
LLELLSSGSDEKYSFGSDAVDSRLAIVRLVAILVFTIHNVIRESDNQSYAEILQRSVLLQ
NAFTAAFEFMGHVVERCIQLNDPSSSFLLPGILVFVEWLACHQDIALGNESEEKQARARS
FFWKNCITFFNKLMSSGSKFVHEDEDETCFFNMSRYDEGESGNRLALPEDFELRGFVPLL
PAQLILDFSRSHSFGGDSGSKEKKARLQRMIAAGKALATVVRIGEEGIYFDTKGKKFIIG
VEPQTSDDYQLKGSKEVTNLSGIELESPDAGQLTLGDLLPKQQLYLECEDDDEVILFKPS
VTEKPNGISSSTMTLAVPVSGSSVANAPSGASMAFVDMCCETGPYPSALDGLRLQNAWHT
TRLPTSISHTNTQYMQPIQPSTSMWTVEQGAVMNGLGGLSLAGNGPTTEAELLNHPEMTP
PTAYSVPLPQSVKYSTASNIHFQVPETAVSSTFSSLTSSVASSDCMSMKSSSVISTGTKK
NPVSRPVRHLGPPPGFGSVASKVVDSSSASTLKNENNSIPRMDDYSWLNGGYQLPSAHQS
IVYNNSDFQSAQTYQSVSNSSLAGISFPFPGKQVPSLHMQSDIQKANQQSVALPQQYQGQ
SLWQDRFCVTWIGRLEG
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggccattcagatgaataacagtttggatcattcatcacgggaacgcgttcagaggctc
ttcaacaagaatgtggagttggataacaagcgcagaagagcagcacaagctagagttcct
tctgacccaaacacatggcaacaaatgcgtgaaaactatgaagctatcatccttgaggat
catgctttttctgaacaacatgaaatagagtatgccttgtggcaattgcattatagaaga
attgaggaactgcgtgcacgcttcaatgctgcaataacgtcaaccggatcaaccacttct
cagactggaaaaggtccgcctcgcaacgggccagataacatcacaaggattcgcatgcag
ttcaagaccttcctatcagaagcgactggcttttatcatgatttgattgtgaaaatcagg
gcaaagtatggcctgccgctaggaggtttccctgatgatccaggaaatcatattcctcct
tctaatgatgctaataaatctattgaggtgaagaaaggcttgatatcctgccatcgttgt
ttgatttatctgggtgatcttgctcggtacagaggcttatatggtgagggtgactctaaa
tctcgtgaccttgcagcagcatcaagttattacctgcaagcttcttcactgtgtccatca
agcggcaatcctcatcatcagcttgcaatactggcctcctattccagtgatgagttggtg
gcgatctatcggtattttcgtagtcttgcagtagagaatccttttccgactgcaagggac
aacctgatcattgcatttgagaagaatcgtctgtgttactcccagctgccaggggattcg
aaagcttcagctatcaaggcagctccttcacggacaactggtaaaggaagaggtaaatat
gaaatgaggcagtctctgaaagatgaaaaggttgaagcaagtatatcaaaggaaaatact
tcaaatatatctgaaatcttcaaaacctttagcactggattcgttcggttgaatggtatt
ctcttcacgcgcactagcttggagacttttgaagaagtgctgttgatggttaagaatgat
ctgcttgagcttctctcttctgggtctgatgagaagtatagttttggttcagatgctgtt
gactccagactggcaattgtcaggctcgtggccatcctagtattcaccatccataatgtg
attagggaaagtgataatcagtcatatgctgagattctacagagatcagttcttctacag
aatgcatttactgctgcttttgagttcatgggtcatgtggttgagagatgtatccaatta
aatgatccctcatcaagcttcttattgcctggtattttggtttttgttgaatggttggcg
tgccatcaagatatcgcacttggtaatgagtcagaggagaaacaagcgagggctagatcc
tttttctggaagaactgcatcactttttttaataagctaatgtcgtctgggtctaagttt
gtccatgaagatgaagatgaaacatgctttttcaatatgagcaggtatgatgaaggtgag
agtggtaatcggcttgcattgccagaagattttgaacttcgaggatttgttcctcttctt
ccagcacagctcatccttgacttctcaaggagccattcttttggaggtgatagtggaagt
aaagagaaaaaggcacgtcttcagaggatgatagcagctggaaaggcccttgctactgtt
gtacggattggagaagagggaatatattttgacaccaagggaaagaaatttataattggt
gttgagccccaaacttctgatgattatcaacttaagggctccaaggaagttaccaactta
agtggtattgaactggaaagtccagatgctggacagttgactctgggagatttgctccca
aagcagcaattgtatttggaatgtgaagacgacgacgaagttattctttttaagccatca
gtgacggaaaaaccgaatggcatctcttcaagtacaatgacgttagcggttcctgtatct
ggtagtagtgttgccaatgctccttctggtgctagcatggcttttgttgatatgtgttgt
gagacggggccatatccgtctgcactcgatgggttgaggttgcagaatgcttggcatact
acaaggctgccaacaagcatctctcataccaatacccaatatatgcagccaatccaacca
agtacttcaatgtggactgtagagcaaggtgctgttatgaatggattggggggcttgagc
ttggcaggaaatgggccaacgacggaagctgagttgctaaatcatcctgaaatgacgcca
cctacagcatattcagttcccttaccccagtctgtgaagtatagcactgcaagtaatatt
cacttccaggttccggagactgctgtgtcatctaccttcagttcacttacatcctccgta
gccagttccgattgcatgtcaatgaaatcttcatcagttatctcaacaggaacgaagaaa
aatccagtgagccgaccggttaggcatctgggtccacctccagggtttggttctgttgct
tccaaagtagtagactcttcatctgcctcgactttaaagaatgaaaacaactccatccct
cgtatggatgattatagctggttgaatggaggatatcagttaccttcagcacatcagagc
attgtttacaataactcggactttcaatcagctcaaacatatcagtctgtaagcaacagt
agcttagccgggattagctttcctttccctgggaaacaggtgccctctctgcacatgcag
tcagatatccagaaagcaaaccaacaatctgttgcactgcctcagcaatatcaaggacag
tccctgtggcaagatcgtttctgtgtgacatggatagggagactagagggttaa
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