Capsicum annuum (peppers): 107843815
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Entry
107843815 CDS
T04646
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
107843815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cann03021
]
107843815
Enzymes [BR:
cann01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
107843815
Transcription machinery [BR:
cann03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
107843815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
107843815
NCBI-ProteinID:
XP_047253362
LinkDB
All DBs
Position
10:complement(217543186..217575019)
Genome browser
AA seq
1676 aa
AA seq
DB search
MIQGASEAVEAVHFSFMTDEEVRRHSIVKVTSPNLLDTIGNPVPNGLYDPAMGPLDERSP
CKSCGQRNCSGHCGHIELVSPVYNPLLFNMLHNLLQRTCFYCFHFRASRAEVEKCVSELE
LIAKGDVVGAKTMDALSPDESSDREESEGSHMSCTMDDLNRQDQCEYNKRPSWDNFQFIE
AMVVIDRILKTKSGKCSNCDAKNPKITKPSFGRFHMDISSKQIRDNSIKSDRRFNLHYTG
GSEENPSPEVVNVTEPSVEDETSLFVTSSDGLENPKARGKQGVDQSDVIEKQQKDSFSVA
HLPSQVRNIIEHLWENEAPLCTFFCDIQSQHRNTPGNVAGPSMFFLESILVPPVKFRPPA
KAGDSVMEHPHTVLLGKVIQSNIALGNAHINRVGRSKIISRLMDLQQSVNVLFDSKTASG
PGQKDAGTGICQLLEKKEGIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLT
YPERVTPWNANKMREAIINGPDNHPGAFSFADRISTVKLPSSKRARVAISRKLPSSSGMV
TQSGRNDEYEFEGKVVQRHLQDGDIVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANC
SSYNADFDGDEMNVHFPQDEISRAEAYNIVNANEQYIVPTKGDTVRGLIQDHIVGAVILT
MKNTFLTLHEFNQLLYGSGVFAAGPCPTSGNHSNKVSVVDSEGVVQTILPAVWKPKPLWT
GKQVITALLNHLTNGCAPCTVKNKGKIPYPYFLSQSRLAEYQSREEEEDRTAENKFLIWR
NELVRGVIDKAQFGKFGLVHTIQELYGSNKAGILLSALSRLFTIFLQLHGFTCGVDDLVI
LPNYDIRRKEELEGEDVGEEAHCDFVKFKRGEIGPLELQLEIEKAVSSNKEAATAALDMK
MKNKLANKGSQFNKELLLKGLLKPFPRNCIALMTITGAKGSTVNFQQISSYLGQQELEGK
RVPRMVSGKTLPCFPPWDCASRAGGYVSDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSR
SGYLQRCLIKNLESLKVCYDYTVRDADGSIIQFYYGEDGVDVHRTSFLKNFKALKDNQET
ISQKLRHRCKLNSYIEKLPEGLEEKVKHFWEKKGKKLEKKLEKLVKKEEILKQLKAEEVD
FLELVGQKYFSSLADSGEPVGVLAGQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEI
LMTASDTIKTPIMTCPFLGWKSKDDAQSLLAKVKKITVADMIESMEVNLLPLSIHNHQVS
QLYKLTVMLKKHDFVSSEDCEYTLTYVFLRELEDAIESHLALLSKINGIQNFKSSSESVA
SNETEENSSSTRHEEGDDDDDDDEAEDERTEDLSSDALKRKLQSTDEMDYDDASEEEPET
TAEVEEEKSDQADDIGNGDEEEIGDHGNEEQTSKLHSKEEDIANTQKSKSRTKTTVKQKK
KKERRSRKDSDRSVFVAVDGLHFEVHFRLVNEPHILLAQVAQKTAKKVYIKNSGKIDQCR
MVKYEVTENTVMWDEKQTKQQSQDTDSAYWALKAAGVDFRTFWEMQDDLDVSRIYTNNIR
AMLNTYGVEAARASLIREVKTVFGIYGVEIDYRHLSLIADFMTHTGGYQPMSRHGSISES
LSPFLKMSFETASKFIVEAAAHGLTDYLETPSSRICLGLPVKMGTGCFDIMQKLDI
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgattcagggtgcatcagaggccgttgaggcggttcacttcagtttcatgacagatgaa
gaagttcgtaggcatagtattgtaaaagtcacaagccctaatttgcttgatacaataggg
aatccagtgcctaatgggctctatgatccggcaatgggtccccttgatgagcgttctccg
tgtaaatcatgtggccaacgtaactgctctggtcactgtggtcatattgaacttgtttca
ccggtctacaatcccttgcttttcaatatgctgcacaatcttctgcaaagaacatgcttt
tattgtttccattttagggcatcaagagcagaggttgaaaagtgtgtttctgaattagag
ttaattgcaaaaggtgatgttgttggggccaaaacgatggatgccctttctcctgatgaa
tctagtgatcgggaggaaagtgaaggcagccatatgtcatgcacaatggatgatttgaat
aggcaagatcagtgtgagtacaataagaggccatcttgggacaatttccagtttattgaa
gctatggtagttatcgatagaattctcaagacgaaatctgggaaatgtagcaactgtgac
gcaaaaaatccaaagatcaccaaacctagttttggacggtttcatatggatatctcaagt
aagcaaattagggacaattctatcaaaagtgatcgcaggttcaatctgcattacactggc
ggaagtgaggaaaatccttcccctgaggtggtaaatgtcaccgagccatcagtggaagat
gaaaccagcttatttgtgacttcttcagatggattagaaaatcctaaggcacgtgggaag
caaggggttgaccagtctgatgtgattgagaagcaacaaaaggactcattttcagtagca
catttaccatctcaggtcagaaatattatagagcatttatgggaaaacgaagctcctctt
tgcacattcttctgtgatattcagagccagcaccgtaatacacctggcaacgtggctggg
ccctctatgttctttttggagtccattcttgtaccaccagtcaagttccgccctccagcc
aaagcgggtgactctgttatggaacatccacatacggttcttcttggcaaggtcattcag
tcaaatatcgctttgggaaatgctcatatcaaccgggttggaaggtctaagatcattagc
cgcttgatggatcttcaacaatctgtaaatgtgctgtttgatagcaaaacagcttctggt
ccaggtcaaaaagatgctggtacgggcatatgtcaattgttggaaaagaaagaaggtatc
ttccgccagaaaatgatggggaagagagtcaattttgcctgtcgatcagttatatctcca
gatccttatttggctgtcaatgaaattggaattccaccatattttgctttaaggttaacc
tatcctgagagggtgactccttggaatgctaataaaatgagagaagctataatcaatggg
cctgataaccatcctggggctttctcttttgccgatagaatatctactgtgaaactacca
tcaagcaaaagggcacgtgtagcaatatctagaaaattgccttcctcaagtgggatggtg
actcaatctgggaggaacgatgaatatgaatttgaaggaaaagttgttcagcggcactta
caagatggggatattgttcttgtgaatagacagcctacgcttcacaaacccagtataatg
gcccacgttgtccgtgtactgaaaggagaaaaaactcttcgcatgcactatgctaattgc
agttcctataatgccgattttgatggtgatgaaatgaatgtccactttccacaagatgaa
atttctcgtgctgaagcatataacattgtaaatgctaatgaacagtacattgtcccgact
aagggagatacagttagaggcttgattcaggatcatattgtaggcgcagtgattcttacc
atgaagaatacttttttgactcttcatgagttcaaccagcttctgtatggatctggtgtg
tttgctgctgggccttgtcctacttctggcaatcactcaaataaagtgtctgtagtagat
tctgaaggtgttgtgcagactatcttgcctgctgtgtggaaaccaaagcctctatggaca
gggaagcaggtcatcactgcattactaaatcatcttacaaatggttgtgcaccttgtact
gtgaaaaacaaagggaaaattccatatccgtatttcctgagccagagtcgcctagctgag
tatcagtcaagagaagaagaagaagatagaaccgctgaaaataagttcttaatttggaga
aatgagcttgtacgtggtgtaatcgacaaggcccagtttggaaagtttggtttagttcac
acaattcaggagctttatggatccaacaaagcaggcattttactttctgctctgagtcgt
ttatttactattttcttgcagctgcatggcttcacttgtggtgttgatgatcttgtcatc
ttaccaaattacgatattcggaggaaggaggaacttgaaggagaggatgttggtgaagag
gctcattgtgattttgtgaagttcaagcgtggagaaataggccctttggagctccaacta
gaaattgagaaagcagtaagtagcaacaaagaagctgccacagcagccttagacatgaag
atgaaaaataaattggcaaataaaggctcacaatttaataaagagttgctgctaaaagga
ctgttgaaacctttccccagaaactgtatcgcacttatgacaattaccggagcaaaggga
agtacggttaattttcaacaaatttcctcttatctgggacaacaagagttggaaggaaag
cgagtaccacgaatggtttctgggaaaactttgccctgttttccaccatgggactgtgct
tccagggcaggaggttatgtcagtgatcgctttctttctggacttcgtccccaggagtac
tattttcattgcatggctggtcgtgaaggattggttgatactgctgtcaaaacatctcgc
agtggatatctgcaaaggtgcttgataaaaaacctggaatctcttaaagtctgttatgat
tataccgtgcgtgatgcagatggttcaattatccaattttattatggagaagatggtgtt
gatgtacatcgaacaagtttcctcaaaaacttcaaagcactgaaagataatcaagaaacc
attagccaaaagttgcgtcacagatgcaaactcaattcctatattgagaaattgcccgaa
ggcctggaagaaaaagtgaagcacttctgggagaaaaaaggaaagaagttagagaagaaa
ttagagaagctagtgaagaaggaagagatattgaagcaactgaaagcggaggaggtggat
tttctagaattagtagggcaaaagtacttctcaagtctggcagattcaggagagccagtt
ggtgtccttgctggtcagtcagtcggtgaaccttcaacccaaatgacactaaacactttt
catcttgcgggccgtggagaaatgaatgtcactcttggaattcctcgtcttcaggagatt
ttgatgactgcctctgatactattaagactcctatcatgacgtgccccttcctaggctgg
aaatcaaaggatgatgcccagtctcttttggcaaaagtaaagaagatcactgtcgcagat
atgattgagagtatggaggtcaatcttttgccgctatcaatccacaaccatcaagtttct
caactttacaaactcacagtgatgctcaaaaagcatgattttgtgtcatcagaagattgc
gagtataccctaacatatgtgttcttaagggagttggaggatgcaatagaaagtcatttg
gccttgctctctaaaattaatggcatacagaacttcaagtcaagctcggaatcagtggct
tcaaatgagactgaagaaaattcttctagcaccagacatgaagagggggatgatgatgat
gacgacgatgaagctgaggatgaaagaactgaagatcttagttcagacgcactaaaaaga
aaactgcaaagcacagatgagatggattatgacgatgcttctgaagaagaacctgagacc
actgctgaagttgaagaagagaaaagtgaccaagcggatgatattggaaacggtgatgaa
gaggaaattggagaccatggcaatgaagagcagacatctaagttgcattctaaggaagag
gacatagcaaatacccaaaaaagtaaatcaaggaccaaaacaaccgtcaaacagaagaaa
aagaaagaaagacgtagcagaaaggattcagacaggagcgtctttgttgctgtggacgga
ctgcattttgaggtccactttagattggtcaatgaacctcatatcttgttagctcaggtt
gcccagaagactgcaaagaaagtgtatattaagaactccggtaaaatcgaccagtgcaga
atggtcaagtatgaagtaactgaaaatactgtgatgtgggatgaaaagcaaacaaagcaa
caaagccaagacactgattctgcttattgggcactgaaagcagccggagtggattttcgc
accttctgggaaatgcaagatgaccttgatgttagtcgtatatacacgaacaatattcgt
gctatgctgaacacctacggagttgaagctgctcgggcatcactcataagagaggtcaag
actgttttcggtatatatggagtggagattgattatcgacatttgagtctaatagccgat
ttcatgacccataccggtggataccagccaatgagcagacacggaagcatatccgagtct
ctgtcacctttccttaagatgtcatttgaaacggcttccaaattcatagtcgaagccgcg
gctcacggcttaactgactacttagaaacaccatcctccagaatttgcttaggtttgcca
gtgaagatgggcactggttgttttgacataatgcagaagctagatatttga
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integrated database retrieval system
