Capsicum annuum (peppers): 107843890
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Entry
107843890 CDS
T04646
Name
(RefSeq) Fanconi anemia group J protein homolog isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
cann
Capsicum annuum (peppers)
Pathway
cann03440
Homologous recombination
cann03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107843890
03460 Fanconi anemia pathway
107843890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cann03400
]
107843890
Enzymes [BR:
cann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107843890
DNA repair and recombination proteins [BR:
cann03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107843890
FA (Fanconi anemia) pathway
Downstream FA components
107843890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
ResIII
Pex19
GcrA
DUF4230
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
107843890
NCBI-ProteinID:
XP_016543788
LinkDB
All DBs
Position
10:218848709..218864672
Genome browser
AA seq
1275 aa
AA seq
DB search
MKNSKRPPPPPPPSQNPKPSKQTVHIGGIPVDFPYQPYGTQLSFMNRVIATLDKAQREGK
SHALLESPTGTGKSLSLLCSALAWQQNFKSKNIYSNFVHSKPDPQALNDPIGHGGGFIPE
TQPSGNPNTAPPAASDGMRKKQAVPTIFYASRTHSQLSQVVREYSKTNYRVQMAILASRK
HYCTNVNVRGEDNIDEKCKLLLKDREAGCSEFKNVHKVKGHPSIQKGGCHEAHDIEDLVK
VGQIVKGCSYFAARSMVDDAELVFCPYSYIINPVVRRAMEVNITGAIIILDEAHNIEDIC
RDAGSVDVEEDILLQLQMELEQLIRSDAMTYQPLADMTQDIRSWIARKKNTLERHDFQHY
SSCWTGDKALKELQEANVTKQCFPILQECASKAIRAASEAEPGTDYLSGMAASVLEGLFS
SLNYFFSGDGLHVCNYQLALQHYVKKLPGTAVGSWTQTFSLWCLNPAVVFREIADSCLSV
ILTSGTLSPMDSFSSELGVTFGTSLEAPHVIDVESQLWAAVISRGPRNYPLNASFKTADS
YAFQDALGTSLEEICNIVPGGCLVFFPSYKLMEKLRSRWKETGQWNQLNARKPIFVEPRG
GQEEFESVLNGYYSSINQRKKPVMGRKKKAKGSALNDSTPHEVSDENKKKGAAFLAVCRG
KVSEGIDFSDEKARVVIVVGIPFPNINDVKVDLKKKFNNTYKSSKNLLSGSEWYCNQAFR
ALNQATGRCIRHRFDYGAVIFLDERFCEARNRAYISKWLRNSIRHFSSFDKSMEELKSFF
KDVKERVGNAASSLQSSVIDVEENAFVTKSIRTRQKNQKLSTSDVKGLKEEENGALIGQK
ARLLCQSSCIDTMYNTSSTKMRNDAPRLMLSDDEDSHGHRGHIDLECDSEFSSRLSGDPL
TVTHAADPQLTIVNETPATDDIIHISSPQSFSKDEYSSSTIIQASSDLSDHLANHPTTQQ
NTEFGCKSPYLMITPQKDAYTKPNMISLDVESSTNSSVNSHVGKRMKRLDLSSIAHLHAE
EFDTQVAKTPMHDSSTCASRKVKDANQMIDSGSRFIQLDKELKKSKFPMLPVLNNCETSV
VQSKLAMHERLQIFCSLCKNPLGRPENNSFVMCSRTSSTKTHLKSLWKGQPETPDPSRHS
IPILIANFSSIDQRIYERASDNSSVQGIWCEEDGCVFKTIFCRFCVNSRHCLGVQVMASD
ASNVTLLNKVLLYCDSLVIKGPESSRKELSPSNNSSFDRGLNSIESFTYTPQQQNLGGWK
TVKSKMRLPKREHLI
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atgaagaattcaaaacgaccgccgccgccaccaccgccgtcgcaaaaccctaaaccgtca
aaacaaacagttcatatcggcggcattccggtagattttccttaccagccttacggtaca
caattatcattcatgaatcgagtcattgcaacacttgataaagctcaacgagaaggtaaa
tcacacgcgctgcttgaatcgcctaccggtaccggaaaatcattgtctcttctttgttcg
gctctagcttggcaacagaatttcaagtcgaagaatatttattcgaattttgttcattcg
aaacctgatcctcaagctctaaatgatcctattggtcatggtggtggatttattcctgaa
acgcagccttcagggaacccgaatacagcaccacctgctgcaagtgatgggatgagaaag
aaacaagctgtgcctaccatcttctatgcctcgaggacacattcacaactttctcaagtg
gttcgagaatacagtaagacaaattatcgggtgcaaatggctatactggcttcacgaaaa
cactactgtacaaatgtgaatgtacgaggtgaagacaacattgatgagaaatgcaagttg
ttattaaaggatcgggaggctggatgctcagaattcaaaaatgttcataaagtcaaaggt
catccatccattcagaaaggagggtgccacgaggctcatgatattgaagatcttgttaaa
gttggacaaatcgttaaaggttgttcatactttgcagcacgttccatggttgatgatgcg
gagttagtgttctgtccatacagttatatcatcaatccagttgttagaagagcaatggaa
gtaaatataacaggagccatcattattcttgatgaagcccacaatatagaagacatttgt
cgtgatgctggtagtgttgatgttgaggaggatattttgcttcagttgcaaatggaactg
gagcaactcatacggtctgatgcaatgacttaccaacctttggcggatatgacacaggac
ataaggagttggattgctaggaagaaaaatactttagaaaggcatgacttccaacactac
tcctcatgttggactggtgacaaggccttgaaagagctgcaagaagccaatgtgacaaag
cagtgctttcccattttacaggaatgtgcctccaaggctatcagagctgcttctgaagct
gagccagggacagattatttgagtggcatggcagcatctgtattagaaggactattctcc
tcacttaattacttcttctcgggagatgggcttcatgtgtgtaattatcagctagcttta
caacactatgtcaagaagcttcctggaactgctgttggtagctggacacaaacttttagt
ctctggtgcttaaatccagctgttgtgttcagagaaattgctgattcttgtctatcagtg
attctaacttcagggactctatcaccaatggactcattttcctctgaacttggtgttact
tttggtacttctctggaagctccacatgttatagacgttgaatcacagttatgggctgct
gtaatctcgagaggacctagaaattatccgttgaatgcaagtttcaaaacagctgattca
tatgctttccaggatgcacttggcacatctttagaggaaatatgcaatattgttccaggc
ggttgtttagtattttttcctagctataagttgatggagaaactaagaagtcggtggaaa
gaaacaggtcaatggaaccaacttaatgctcgaaagcccattttcgttgagccaagaggg
ggtcaagaagaatttgaatcagttttgaatggttactacagttctattaaccaacggaag
aaaccagtgatgggaagaaagaaaaaggcaaaagggtcagctcttaatgacagtactcca
catgaagtttcagatgaaaacaagaaaaagggagctgcttttcttgctgtttgtcgagga
aaggtttctgaaggcatagacttttctgacgagaaggctcgtgtagttatagtcgtgggc
attccctttccaaacataaatgatgttaaagttgatcttaagaagaagttcaacaatact
tataagtcatccaaaaatcttctgagtgggagtgagtggtattgtaatcaagcctttaga
gctcttaaccaagctacaggtcgttgcattcgccatcgatttgactatggagctgtgatc
tttttagatgagcgtttctgtgaggcaaggaatagagcttatatttcaaagtggttgcgg
aactcaataagacacttcagcagctttgacaagtcaatggaagaactgaaatcctttttc
aaagatgtcaaagagcgggttggcaatgcagccagttccttacaaagttctgttattgat
gttgaagaaaatgcttttgttactaagagtataagaaccaggcagaaaaatcagaagttg
agcacttctgatgtgaaagggcttaaggaagaagaaaatggtgcattgattggtcaaaaa
gcccgtcttctatgtcaatcttcatgtattgataccatgtataatacatcctccactaaa
atgagaaatgatgcccctcgtttgatgttaagtgatgacgaggattctcatggtcacaga
ggtcacattgatttggaatgtgattcagaattttcatctaggttgtctggagatccactg
acagttacacacgctgctgaccctcaattaaccattgtaaatgaaactcctgctactgat
gatattattcacatttctagtcctcaatccttctccaaggatgaatattcttcctccacc
attattcaagcatccagtgacctttcagaccacttggcaaatcatcctacaactcaacaa
aatactgagtttggttgtaaatctccctatttgatgattactcctcagaaagatgcttat
acaaaaccaaacatgatatcattggatgttgaatcgtcaactaactcgagcgtcaattct
cacgtggggaaaaggatgaaacgcttggatttatcatccatagctcatctccatgcagaa
gaatttgatactcaggtggccaagactcctatgcatgatagttctacatgtgcatcaagg
aaggttaaggatgcaaaccagatgattgattctggttccagatttattcagttagacaag
gaactgaagaagtccaaatttcctatgttaccagtcctgaataactgtgagacatcagtt
gtgcagtctaaacttgctatgcatgaacgacttcagatattttgctcactttgcaaaaat
ccactggggcgtcctgagaataattcatttgttatgtgctcacgaacatcgtcaacaaaa
actcacttaaaatctctttggaagggtcaaccagagacccctgatccgagcagacatagt
atacctattctcatagctaacttttcgtctattgatcaacgcatctatgaaagagccagt
gataattcatctgttcaggggatttggtgcgaagaagatggctgtgttttcaaaactatt
ttctgccgcttttgtgtaaattccagacattgtcttggagtacaggtcatggcttctgat
gcatctaatgtcacgttattgaacaaggtgctgctttattgtgatagcttggtgataaag
gggcctgaatcatcaagaaaggaattatctccatccaacaattcaagcttcgatagaggc
cttaattccatcgagagtttcacatatactcctcagcagcagaaccttggaggatggaaa
actgtaaaatccaagatgcgattaccgaagagggagcatctcatttag
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integrated database retrieval system
