KEGG   Capsicum annuum (peppers): 107843970
Entry
107843970         CDS       T04646                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cann  Capsicum annuum (peppers)
Pathway
cann03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cann00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107843970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cann03041]
    107843970
Spliceosome [BR:cann03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    107843970
 Complex C
   U5 SnRNP specific factors
    107843970
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP eIF2A Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_DCAF12 Beta-prop_Nup120_160 WD40_like RMC1_N Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 107843970
NCBI-ProteinID: XP_016543901
LinkDB
Position
10:complement(220306474..220311779)
AA seq 340 aa
MQTESALSVIGPRPMELSTVLPSGPQGLGTNGKPRTSSLESPIMLLSGHQSAVYTMKFNP
AGTIIASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDVQWTTDGSTIVSASPDKTVRAW
DVETGKQIKKMAEHSSFVNSCCPARRGPPLIVSGSDDGTAKLWDMRQRGAIQTFPDKFQI
TAVSFSDASDKICTGGIDNDVKLWDLRRCEVTMTLQGHHDTITGMQLSPDGSYLLTNAMD
CTLRIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCSWSPDGSKVTAGSSDRMVYVWDTTS
RRILYKLPGHTGSVNECVFHPNEPIIGSCSSDKQIYLGEI
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgcaaactgaaagtgctttgtcagttattggcccaaggccgatggagttgtctacggtg
cttcctagcggtccccaaggacttggaacaaacggaaaaccacggacatctagcttggag
tcaccaattatgttgctttctggacatcaaagtgcagtatatactatgaagttcaatcct
gcaggtacaatcattgcatctggttcacatgacaaagaaatctttctttggaatgtacat
ggtgattgcaagaattttatggtcttgaaagggcacaaaaatgcagttcttgatgttcaa
tggactactgatggatcaacaatagtatcagctagccctgataagactgttagggcgtgg
gacgttgaaacagggaaacaaataaagaaaatggctgaacattcctcatttgtgaattca
tgctgccccgctcggaggggccctcctcttattgtcagcggatctgatgatggcactgct
aaactttgggatatgcgccaaagaggagccatacaaacatttccagacaaatttcaaatt
actgccgtcagtttctctgatgcctccgataagatctgcacaggtggcattgacaatgat
gtgaaattgtgggatttacgaaggtgtgaagtaactatgacccttcagggccatcatgat
actataactggtatgcagctgagtcctgatgggtcttatcttcttactaatgcgatggac
tgcacactgcgcatatgggacatgcgcccttatgccccccaaaatcgatgtgttaagatc
ttggaaggccaccaacacaattttgaaaagaacttgctgaaatgcagttggtcgcctgat
ggaagtaaggtaacagctgggagttctgatcgcatggtttatgtctgggatacaacatct
aggcgcatcctgtataagctccctggacacactggttctgttaatgaatgtgtttttcat
cctaatgaaccaattattggatcttgcagtagtgataaacagatctatcttggtgagatt
tga

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